sumo3a (sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868)


Basic Information

Item Value
gene id sumo3a
gene name sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 4882787 ~ 4886349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU63300
AGGAAAGCGCGTCCCCGTCGGCAGCTGTGTTGCTCTACAGTGTGGAGAGCGCATCTTGTGTTCGGTATATTTCCATAATACAGACCAACAGACACCTGCAAAAATGTCCGAAGACAAGCCTAAGGAGGGAGTGAAAACAGAGAACGACCACATCAATCTGAAAGTGGCGGGACAGGATGGCTCGGTGGTCCAGTTCAAAATTAAAAGGCACACGCCACTCAGCAAATTAATGAAAGCATACTGTGAGAGACAGgGCTTGTCGATAAGACAGATTAGATTTAGATTTGACGGGCAACCAATTAACGAGACGGACACACCGGCGCAGCTGGAGATGGAGGACGAGGACACAATTGATGTATTTCAGCAACAAACCGGCGGCTCCTGCTAAAACTCCACACCACCCGGACCCCACACTTATCTATTTTATTCCTCATGATGTTTCATTCAGATGCTTTCACATCGTTTCccttctctttgtctctttgtCTCTATTCTGTCATCTCTAGCTTTCCTAGAGCGGGCATCGCAAATGTGTTTCCAGTAATATTTATATGCGCAATTAGACTGCTACTGTGGCGGGGGAACAAACCCAAAAAAGGCTGCCAGAGGGCGTACTTCTTTAGAATATCCACACCAGCCGCCGCGCAGGGTTTTATGTTGCTCCGGACACTTGATTCACTCGACAAGCCCCCCGGGAACCGCTCACCCCCCCCCTCCGTAGTACAGCCGCCCAATACAAAGTGGGGAAGCATACGTTTCGTTTTCTTCACCTTTTTTGATTCTTAAAGAGCTTTAAGTAGATCTGTTTCCACTCAGATTCTATTTGCCTGTATGTGTTGTAGAAATACGTTCAACCAGTGCTGTATTCATCTGCCTTTTTTTAATGGGGCCGCTTCTCGTATGAGCTCACTATATAGGCGGGATCTGTGAACCATCTCGGTAAAGGTCGACTTAAAAATGAAGACGCTGACTACATGATACACTTCACAGTGACCCCCTTCTGGACCAAACCCTAAAGATGGTACTCGATTAGCAAGTAGGGCCAGGATTACACCAACTAGTTCTgtgtttatacttttaaatgtgtgtagAAATATATCCATTTACCCTTTCTGTTTCCTCTCGAGTGTTGGCTGAGGAAACGGGAATGACTTAAAAagaccaatatatatatattttttcctgttcATTACTTccccttctgtttttttttaaatcccaaaTCTATGACCAGGTCTTGGAGCAAAACAAAAGGGAATCCTTTCAGGCTTAGTTGAGGCGATGTCAGGGCTCACAAGGACTGGTCTGATTTCTTTTAACTTCTCTTGCCCTCCCACTGTAATTCATATTAGCTGAAAGGGAGAGAGAGTTCGACTCCAAGATTTCCAGATGTTGGCATCCTTCTGTACtgatatgtacattttttttttttttgttgtcctTTACTActgtaaacaataaatatagtttggtactcattttttttttttttgccaaggcTTTTCACCATGTCCaaagagtttttgttttgtgtaattgttaaacagcatgtttttttttttttttttaagtttgccATCAAATAGAGCCTGTAGAAAAGCTTACCGAAGCACAAGGACGCATCCTTTTAACAAGATGTCAAAAAGTTTCTTTATACACAGTTATTACAtgtataaacatacaaaaacatgaGATGAAGTGTCaataaagattaaatataaaatataaataaaatctggaGTGTCACAAAGGCACTTGAATGTACATGTCACACATGTAGCTTTTTGCATTGTCTTACAAGACGAGATGCAGTGTCTTTTCATGTCCacttttaagattaaaatatatttctaaaagtCTACAGTAACAGTTACAGAGAACAAAATGCttgtaaaacacttttcttaCACTGAAGTGCaaaactgctaaataaaaat
>XM_043241940.1
CAGAAACCAACCAATCGCTGATAAAGTAGGTAAAGGAAAGCGCGTCCCCGTCGGCAGCTGTGTTGCTCTACAGTGTGGAGAGCGCATCTTGTGTTCGGTATATTTCCATAATACAGACCAACAGACACCTGCAAAAATGTCCGAAGACAAGCCTAAGGAGGGAGTGAAAACAGAGAACGACCACATCAATCTGAAAGTGGCGGGACAGGATGGCTCGGTGGTCCAGTTCAAAATTAAAAGGCACACGCCACTCAGCAAATTAATGAAAGCATACTGTGAGAGACAGgGCTTGTCGATAAGACAGATTAGATTTAGATTTGACGGGCAACCAATTAACGAGACGGACACACCGGCGCAGCTGGAGATGGAGGACGAGGACACAATTGATGTATTTCAGCAACAAACCGGCGGCTCCTGCTAAAACTCCACACCACCCGGACCCCACACTTATCTATTTTATTCCTCATGATGTTTCATTCAGATGCTTTCACATCGTTTCccttctctttgtctctttgtCTCTATTCTGTCATCTCTAGCTTTCCTAGAGCGGGCATCGCAAATGTGTTTCCAGTAATATTTATATGCGCAATTAGACTGCTACTGTGGCGGGGGAACAAACCCAAAAAAGGCTGCCAGAGGGCGTACTTCTTTAGAATATCCACACCAGCCGCCGCGCAGGGTTTTATGTTGCTCCGGACACTTGATTCACTCGACAAGCCCCCCGGGAACCGCTCACCCCCCCCCTCCGTAGTACAGCCGCCCAATACAAAGTGGGGAAGCATACGTTTCGTTTTCTTCACCTTTTTTGATTCTTAAAGAGCTTTAAGTAGATCTGTTTCCACTCAGATTCTATTTGCCTGTATGTGTTGTAGAAATACGTTCAACCAGTGCTGTATTCATCTGCCTTTTTTTAATGGGGCCGCTTCTCGTATGAGCTCACTATATAGGCGGGATCTGTGAACCATCTCGGTAAAGGTCGACTTAAAAATGAAGACGCTGACTACATGATACACTTCACAGTGACCCCCTTCTGGACCAAACCCTAAAGATGGTACTCGATTAGCAAGTAGGGCCAGGATTACACCAACTAGTTCTgtgtttatacttttaaatgtgtgtagAAATATATCCATTTACCCTTTCTGTTTCCTCTCGAGTGTTGGCTGAGGAAACGGGAATGACTTAAAAagaccaatatatatatattttttcctgttcATTACTTccccttctgtttttttttaaatcccaaaTCTATGACCAGGTCTTGGAGCAAAACAAAAGGGAATCCTTTCAGGCTTAGTTGAGGCGATGTCAGGGCTCACAAGGACTGGTCTGATTTCTTTTAACTTCTCTTGCCCTCCCACTGTAATTCATATTAGCTGAAAGGGAGAGAGAGTTCGACTCCAAGATTTCCAGATGTTGGCATCCTTCTGTACtgatatgtacattttttttttttttgttgtcctTTACTActgtaaacaataaatatagtttggta

Function

symbol description
sumo3a Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be located in PML body and cytoplasm. Predicted to be active in nucleus. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Orthologous to human SUMO3 (small ubiquitin like modifier 3).
sumo3b Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Predicted to be involved in protein sumoylation. Predicted to be located in PML body and cytoplasm. Predicted to be active in nucleus. Orthologous to human SUMO3 (small ubiquitin like modifier 3).

NR:

description
PREDICTED: small ubiquitin-related modifier 3

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63300 True 1937 lncRNA 0.41 4 4882787 4886316
XM_043241940.1 False 1507 mRNA 0.44 4 4883250 4886349

Neighbor

gene id symbol gene type direction distance location
coq7 coq7,LOC107677563,LOC107740598,LOC107581445,LOC107705527 coding downstream 31863 4848878 ~ 4850924 (-)
notum2 LOC107677565,LOC107581444,LOC107705526,LOC107660052,LOC107584829 coding downstream 41632 4834967 ~ 4841155 (-)
ccr7 ccr7,LOC107677611,LOC107581378,LOC107740599,LOC107705525,LOC107584769,LOC107660053 coding downstream 50823 4829435 ~ 4831964 (-)
nfe2l2b LOC107740600,LOC107677604 coding downstream 63316 4812355 ~ 4819471 (-)
lnpk lnpb,LOC107740586,LOC107677603,LOC107581375,LOC107705573,LOC107660049 coding downstream 78915 4796718 ~ 4803872 (-)
pttg1ipa pttg1ipa,LOC107677570,LOC107740579,LOC107660056,LOC107581447 coding upstream 1190 4887539 ~ 4891669 (-)
myo10l1 myo10l1,LOC107581381,LOC107740578,LOC107705496,LOC107677542,LOC108430864,LOC108272349 coding upstream 7743 4894092 ~ 4938243 (-)
trnak-uuu_105 NA coding upstream 69197 4955546 ~ 4955618 (-)
pcnt pcnt,LOC107555398,LOC107677569,LOC107660059,LOC107743407,LOC107584825,LOC107705497 coding upstream 69999 4956348 ~ 4991444 (-)
pjvk dfnb59,LOC107555423,LOC107584822 coding upstream 119102 5005451 ~ 5008963 (-)
LOC122346990 NA non-coding downstream 1394 4867127 ~ 4881393 (-)
G42644 LOC101169590,LOC106917580,LOC108430882 non-coding downstream 178284 4698903 ~ 4704503 (-)
G42614 NA non-coding downstream 377120 4503734 ~ 4505667 (-)
G42615 NA non-coding downstream 379581 4502720 ~ 4503206 (-)
G42606 abi2 non-coding downstream 407995 4473919 ~ 4474792 (-)
G42955 baz2b,LOC107677545 non-coding upstream 247453 5133802 ~ 5228971 (-)
G42960 LOC107584764,LOC107677591,LOC107743335 non-coding upstream 253050 5139399 ~ 5238937 (-)
G42956 NA non-coding upstream 272995 5159344 ~ 5173432 (-)
G42969 NA non-coding upstream 284847 5171196 ~ 5172061 (-)
LOC122346706 NA non-coding upstream 299252 5185601 ~ 5191999 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other downstream 57321 4818191 ~ 4825466 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other downstream 108241 4766381 ~ 4774546 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other downstream 144245 4709290 ~ 4738542 (-)
nudt15 LOC107584789,LOC107705561,LOC107706649,LOC107677555,LOC107660035,LOC107581358 other downstream 385369 4493912 ~ 4497418 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other downstream 467574 4394407 ~ 4415213 (-)
G42958 LOC107742327 other upstream 343107 5229456 ~ 5230710 (-)
adam23a adam23,adam23a,LOC107748557,LOC107705602,LOC107660086,LOC107688856 other upstream 736337 5622686 ~ 5639926 (-)
arl6ip6 LOC107688850,LOC107748576,LOC107705609,LOC107660093,LOC107566311,LOC107555419 other upstream 805132 5691481 ~ 5699650 (-)
mylkb mylkb,LOC107688847,LOC107748549,LOC107555454,LOC107705608,LOC107566310,LOC107660138 other upstream 837119 5723468 ~ 5736620 (-)
desmb desmb,LOC107566324,LOC107660100,LOC107705613,LOC107688844,LOC107566784,LOC107748575 other upstream 1072444 5958793 ~ 5966604 (-)

Expression


Co-expression Network