itm2ba (itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357)


Basic Information

Item Value
gene id itm2ba
gene name itm2ba,LOC107677554,LOC107584788,LOC107660034,LOC107705560,LOC107581357
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 4487736 ~ 4494016 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241730.1
agagaaaaaaaaaacctttgacaaaaacaaatttcaGTTGTACGACATGGTGAAACTTGCTTTCAACTCCGCTCTCGGACAGAAGGATTTAAAAAAGGAGGAGAAGGATGAAGCTTTGATCCCTCAGGATGTGGACTTGGAGGATGGTCTGCGCATCAGGCAGCAGTCCAGGGCCTGGTGCTGGTGCATGTGTTTGGGTCTGGCCCTCATCCTGTCTGGAGTGGTTGTGGGCGGAGCTTACCTGTACAGGTATTACTTCATAGAGGAGGAGAGGATGTATTTCTGCGGGGTAAACTACCGTGAGGAAAATTACAAGATGCAGGACAGCCAGGAGGAGACTGACATGGATATGCCTGCCGCTTCCAAGAGGATTGAGGAGAGAGTGAGGGTTCTGGAGGACGAGGGGGTGGAGCTCATTAACATCCCAGTGCCCAAGTTCAGCGACAGCGACCCTGCTGACATCGTTCATGACTTCAACAGGAGACTGACAGCCTATCTGGATCTGCGTCTGAACAAATGCTACGTCATTCCTCTCAACACCTCTGTTGTGATGCCGCCCAAAGACTTCCTGGAGCTTCTTGTTAACATCAAGGCTGGAACGTACCTGCCTCAGTCCTACCTGGTGCGTGAACAGATGATGGTGACCGGAAAGTTGGAGCATGTGGATCAGCTGGGTTACTTCATCTACGGCCTCTGCAGAGGGAGGGACACTTATAAACTGGAGCGCAGAGAGACTGTTTTTGGTATCCAGAAGCGAGAGGCTCTCAACTGCCACAAGATTCTCCACTTTGAGAACAAGTTTGTGGTGGAGACTCTTATCTGTGAGCCGTAGGGTGTAAAGACAGCCGGGTAACAAGTTAAAACCACTTTTGACAAATTCCACTGACCCTTCCTCTCCTTCCATTAAATATCTTCCTATTTCCCCAgttagtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgctgctctCAGATTTGTTTCTCTGTATAGCAACAATCAATattgcagagagagagaatgagactgaacgccaagagcAATATAATGCGTAGAAACATTTATGTGTAGGCAAATATCTGGACCAGTTTCTCTCTTAGTAAACATTTTTCTGTGTCTGAGTTTCTGTTAAGCAGGGAGCTCCAAGGGTGTGTGGGATGTAAcgtaggaaaaaaaacaaaaaaactagtACCACGTTGACCATGGGAGAGAGAAGGACTTACAGAGGATAAATGTACAATGAGATCTATAAAAGATGCACTAAATGTTTAGTGTTCGTTTAAAACTGTGAAGCGTCACAGATACCAGATTATATACTGGAAATATATTTGACTAGAGATTTGTGATATATGGCCAATTATTACATGTAAGAAGTACACATAGAATCGATTTTTGTACTAGCTTCAATTTAgtctagatttttattttaaatgacaggtTTTGCTCTGCTGTAAGTTAATACACTGCTGAAACATCCTGTAGTGAAGAAGTAAAATCTATAggatgcaaaacattttttaaatcttaaaaaaaaaaaaataaaatataaaaaaaaaaaaatccaaaagcaTAAATCAAACGTCAGAGTACAGACTAATAAAATGTGTGACTTATCACTTAGGGGCTGTTGAGGTATTGGGAGTAGACTGATGAATGACTTCTGTAAAGATTgtttaaaattactaaaatgtctACCAGTTCAACATGAGTTGGAATGATTTATACTTTGCACATAACCCAAAAAGGTTTTAATGTTAAacatattaatactaataaaatttgACCACACA

Function

symbol description
itm2ba Predicted to enable amyloid-beta binding activity. Predicted to be involved in negative regulation of amyloid precursor protein biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and plasma membrane. Human ortholog(s) of this gene implicated in ITM2B-related cerebral amyloid angiopathy 1 and ITM2B-related cerebral amyloid angiopathy 2. Orthologous to human ITM2B (integral membrane protein 2B).

NR:

description
PREDICTED: integral membrane protein 2B isoform X1

GO: NA

KEGG:

id description
K18264 ITM2B; integral membrane protein 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241730.1 True 1792 mRNA 0.42 6 4487736 4494016

Neighbor

gene id symbol gene type direction distance location
zp2l2 NA coding downstream 24239 4460324 ~ 4463497 (-)
fzd7b fzd7,fzd7b,LOC107581350,LOC107677598,LOC107706658,LOC107660027,LOC107584796 coding downstream 103914 4380136 ~ 4383822 (-)
nop58 nop58,LOC107705548,LOC107660025,LOC107706660,LOC107677590 coding downstream 117980 4363382 ~ 4369756 (-)
LOC122347627 NA coding downstream 119492 4368161 ~ 4368244 (-)
wdr12 wdr12,LOC107677607,LOC107706661 coding downstream 130789 4351582 ~ 4356947 (-)
b3galt1a b3galt1a,LOC107706645,LOC107677552,LOC107660037,LOC107705557,LOC107584782,LOC107581362 coding upstream 47244 4541260 ~ 4550613 (-)
xirp2a LOC107581361,LOC107677546,LOC107706644,LOC107705540,LOC107660038,LOC107584781 coding upstream 60454 4554470 ~ 4582264 (-)
scn1lab scn1lab,LOC107677574,LOC107705566,LOC107660039,LOC107581364,LOC107706643,LOC108242159 coding upstream 96148 4590164 ~ 4620337 (-)
sp3b sp3b,LOC107740591,LOC107677581,LOC107581370,LOC107660043,LOC107584779 coding upstream 254022 4748038 ~ 4759615 (-)
ola1 ola1,LOC107660044 coding upstream 266208 4760224 ~ 4765355 (-)
G42606 abi2 non-coding downstream 12944 4473919 ~ 4474792 (-)
G42586 NA non-coding downstream 55409 4430558 ~ 4432327 (-)
G42551 NA non-coding downstream 171625 4311809 ~ 4316111 (-)
LOC122346891 NA non-coding downstream 233693 4251834 ~ 4254043 (-)
G42524 NA non-coding downstream 299025 4187700 ~ 4188711 (-)
G42615 NA non-coding upstream 8704 4502720 ~ 4503206 (-)
G42614 NA non-coding upstream 9718 4503734 ~ 4505667 (-)
G42644 LOC101169590,LOC106917580,LOC108430882 non-coding upstream 204887 4698903 ~ 4704503 (-)
LOC122346990 NA non-coding upstream 373111 4867127 ~ 4881393 (-)
G42955 baz2b,LOC107677545 non-coding upstream 639786 5133802 ~ 5228971 (-)
cdk15 cdk15,LOC107706659,LOC107677597,LOC107660030 other downstream 72523 4394407 ~ 4415213 (-)
G42351 NA other downstream 526194 3958367 ~ 3961542 (-)
cep20 fopnl,LOC107706683,LOC107713084 other downstream 533405 3952528 ~ 3954331 (-)
cep170ab cep170l,LOC107581301,LOC107678228,LOC107672679,LOC107567737,LOC107753897 other downstream 1379798 3092540 ~ 3107938 (-)
G41955 LOC107735028,LOC107705557,LOC108430057 other downstream 1644478 2840662 ~ 2843258 (-)
dnah9l dnah11,LOC107581427,LOC107677540,LOC108430841,LOC108272446,LOC103372266,LOC104955736,LOC107740597,LOC102781332,LOC107384434 other upstream 215274 4709290 ~ 4738542 (-)
gpr155b gpr155b,LOC107740589,LOC107581372,LOC107584777,LOC107705544,LOC107677583,LOC107660045 other upstream 272365 4766381 ~ 4774546 (-)
LOC122347558 cycsb,LOC103040542,LOC108273362,LOC108430847 other upstream 324175 4818191 ~ 4825466 (-)
sumo3a sumo3a,sumo3b,LOC103392195,LOC107668404,LOC108430868 other upstream 388771 4882787 ~ 4886349 (-)
G42958 LOC107742327 other upstream 735440 5229456 ~ 5230710 (-)

Expression


Co-expression Network