G52257


Basic Information

Item Value
gene id G52257
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 12266661 ~ 12271014 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU77438
TTTAAGTCTCATgttgatcattttattatatatatttataatatgtacagagaagagaaaacaagaTCAAACCCAGCTATGAAACAGCACCGGGGTGAGCAAGCAAAGAGGGATAGAGAAAGAGCGTGTATATTAGACAGAGAAACTACTAAAGAGGTGCTTGCCATTTTACCATCGCCGTgtcttaattgaaaaaaattagaTGTGCAAATGACATgggtaaaaagtaaaaagacgAAAAGCATAAGAACGCTCCATCACATTCATAAGTAACCACAAAATTCATAGATCTAAAGACAGCAGAAAACAATGACCCCTCCGAACGCGTCCCCAAAAAAAGCACTTGTTTAGTGTGTGAATGAGTGCAGGTTTAAATGAGACTTGGTTTTCACACAGACGAAACGCAGGATCCACGACGGACCGGTTTTAAAATCAAAGGCATGTTCCCAAACGCAGTTGCCCCTTGCCCGTCCCTCCTTCCCAGCCATTGCACACATATCCCATTATCCCTGCTACTGCTCCCTCCATCCCGACGCTACCGGGTTCACTTACAAAGCGGTACAAGCAAATCCAGCACACAATATAAGTGATGAGAATGTGCGGTTACGTTGGCATCAGCGGATGTTAGCGGTGTAAAAACTAGATTACACTGGCTCGGTGAgcgaaagtgatctaatatcaCGATGGTGAGACTAGTTAAGATCAAGTGATGCACTAATACTAATGAATTTCACGAAATCTACGTTTCTAGATCCACGTTGTACATAATAAAACAGCCAGGTCAAAAACACTGTCATCAGACCAATCATTtgcagtttttctgtttttttgtttgaaaatgctGATAAGATTGAGTTGCAACCGTGTGGAGTAGAGCGCAGGATCCATATAAACCTCCGAAGGCAACGTCTAAGTTAGCTTCTAGACCTTTAAAGATCCATCTGTAGGTAGATTTGAAAGCTAGAATCTAAAGTGTACAAATATTTCTCATTAAAGAACATGGGAGGTCATATCCGGTCTGCTGATCTGGACCAGTCAATCCCAATATTCCTAGAtgtaatacacaaacacacagcacgCTAAACCGGATCCATGGAACTACCACGCTTTCATCTGGCGAAATTAAGGCCCTTCACAATTATGTAAATCTATTTATcgtgtgtaaataaatacaaaacgcACGCACAAAGCATGATGGGCTGTTTTTGGCAGCAGCGACGACTACGGATTGGACGTCTCAATAAGGTGGTAAAACGACACCAAATTATAGATCTGAGGTTTCGAACCAAAGCCACAAAACTGCTGACCTCGATGTGTCGAGATGGTGTTCGAGCATTCGTTTTGAGCCTGCGGTGGCCGAACACTCAAAATTAGCAGAGGTCATTGAGGTAACAGAGGGAACAGTAGCTTTCATCAGACCTGCCTTAAGCCTAGACCCCCAAAATCCAgattgtgaacaaaaaaaacacctctaTCCGCCCCTTCCCTGACCAGACTATATCAATGACAGCAGTAAGCCTTTGTACAAGCCTtcattagaaaaacaaaaacctacagaaaaagaacaaaaacaaaactcaaatcagttttaaaaatcaccataataacaataatatattagtaGGATGAGAACAAGTATAGAATATTGCCGACTTTGTATGCAGTTGACTTCCTGTCGATTCAGCCTCAGAAGCCATGCTTTCACTCCACAAAACCTCATTCAAGTGACGACGAGTGAGAGAATTACAAACACTAGAGAGACGGGTTCACGTTCCTAACGCAACCTCGCTAGCCGTTTAAAAGGAGGATTTGAGAATCGTCCCTAAATCTGctctcatttgtttttatgcatgaaCGTATGACTGTACTAAAGCTCCATCCTGGACTTTGAGCACAGAGGGCGGGGCTATGGATGTGGGTGGGGTTATTAATGTGCACAGGGAGGAAAAAGGGGTGAGGTGTCTTACACAAAAGAATAGACTAAGGAGAATAAAAAACAAGACTATGGTGTCATAAGTGAAGCCGTAAGGCTGTTAGACGTTGGCTCTTAATGCAGTGGTTCCTCCCgtgagaatgcttttttttttggtatgtgTATGAGAAAATGTGTTTGAGAGGGAAAGGGATGgttgtgtgcgtgtctgtgtgtgcgctcAGGCTCTTCAACAGCAGCCGCCACCAGACTGCCGCACAGGAGTGCTCTCGATTTTCAGGTTGGGCTTGTCTCCTCCGGTTGTTGCTCCAGGGCCCATGCGCTTCTTGATCTCAGCAGCCATAGTCATGAAGGCCTGCTCCACATTCGTGGCATTCTTAGCGCTCGTCTCAAGGAAGGGGATTGCTAAAGAGTCGGCAAATCCTTGGCTGTTGTGTAGTCCACTACTTTCTTGGTGGTAAGGTCGCATTTGTTCCCCACCAGCAGCTTGTTAACGTTCTCGCTTGCGTAGCGGTCTATTTCCTGTAGCCACTGTTTCACGTTGTTATACGATTCCTTTAGAGACAGCAGGGAAGAGAACTCTCAATTTCAACCTTTCGTATGATAAATGAAGACGTGTTATACAGGACTGatactgtaaactaaaactattcaAATCCAGTAACTGAATTAAAGctgaaatcaaatataaatattagttgGGAAAACAAACGAAAATTGGAAATGCGTATGAAAACTCAAACTAAGTTTAAAACGAAagctgaaaatacaaaaataaatgcatttcatcagGCAAGAGTGGATTTTTGAGGATAACATCAGCACAGTCTACACAGTCTAAATGACCTTGAGACTTTTAACTGCAATTGATTCATTATCAATTCGGCTGCAAATTGTGTGTTATTAAATTACGACCAAACAAGTCGGGAGGATTTCTGATGATGTCTCACCTGATCCGTGACATCATAAACCACAATGATACCGTGAGCTCCTCGATAGTAACTGGAGGTGATGGTTCGAAATCTTTCTTGCCCTGCGGTGTCCCACTATaaaaaaggaggaaagaaaATAGATACCTTAACGTAATGTCAAACAAAGCGTGTTTCTAATAAAGGTTTGGCCCCATTTTCACATGTACAATGCGATGACTTGCTAGATTGATCTACTAACCCAAGAAAGCaggtcatcatcatcatcatcgtgtACTGGAGTGCATTCAAGAGACCGTCATGCTATCGCAGATCATGTGAAAAATGAGTGTTATGAGGGACTTACAATCTGTAGCTTAATGGTTTTGCCATCAAGTTCAATGGTGCGGATCTTGAAGTCCACGCCTATGGTGCTGATGTAGCTCTCAGTGTATGTGTCATCCTGCAGGAGCAAAGAGAACCGAAGCATTTACATTTGTGCATACACTACGtctactataaaaatataaaaatacaatcagtCAGTGCTACATTATTTGCAGGTTTTCAgttgatttttaatgaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77438 True 3430 lncRNA 0.42 3 12266661 12271014

Neighbor

gene id symbol gene type direction distance location
LOC122348336 LOC107708967,LOC107597881,LOC107660746,LOC107679281,LOC107558448,LOC107735497 coding downstream 108374 12152473 ~ 12158287 (-)
ecsit LOC107708967,LOC107597881,LOC107660746,LOC107679281,LOC107558448 coding downstream 108411 12144440 ~ 12158250 (-)
men1 men1,LOC107660721,LOC107679288,LOC107731945,LOC107708606 coding downstream 159042 12101771 ~ 12107619 (-)
map4k2 map4k2,LOC107708515,LOC107660717,LOC107679285 coding downstream 165431 12085958 ~ 12101230 (-)
LOC122348280 NA coding downstream 195008 12069584 ~ 12071653 (-)
peli3 peli3,LOC107731914,LOC107597888,LOC107558441,LOC107679255,LOC107709995,LOC107660729,LOC103027529,LOC108440836 coding upstream 1935 12272949 ~ 12289393 (-)
znf16l LOC107597922,LOC107710251,LOC107683503,LOC107731944,LOC107679294,LOC107558438,LOC570544 coding upstream 110959 12381973 ~ 12387908 (-)
rgs12a rgs12a,LOC107683504,LOC107731946,LOC107710430,LOC107558402,LOC107597909,LOC107679231 coding upstream 117505 12388519 ~ 12418778 (-)
msantd1 msantd1,LOC107597910,LOC107683584,LOC107711544,LOC107731892,LOC107679247,LOC107558411 coding upstream 149357 12420371 ~ 12423670 (-)
dtx4a dtx1,LOC107731926,LOC107597891,LOC108267695,LOC107683563,LOC107558401,LOC107711637 coding upstream 154094 12425108 ~ 12442412 (-)
G52288 NA non-coding downstream 505 12262841 ~ 12266156 (-)
G52286 NA non-coding downstream 6756 12259666 ~ 12259905 (-)
G52285 LOC107711447 non-coding downstream 9555 12256496 ~ 12257106 (-)
G52255 LOC107709621,LOC107660727,LOC107597887 non-coding downstream 15829 12246877 ~ 12250832 (-)
LOC122348702 NA non-coding downstream 41851 12223297 ~ 12224810 (-)
G52294 NA non-coding upstream 28803 12299817 ~ 12300106 (-)
G52295 NA non-coding upstream 29987 12301001 ~ 12301221 (-)
LOC122348240 NA non-coding upstream 325944 12596958 ~ 12597574 (-)
G52475 NA non-coding upstream 498438 12769452 ~ 12769833 (-)
G52481 NA non-coding upstream 532988 12804002 ~ 12804373 (-)
zfta LOC107711891,LOC107660744,LOC107731900,LOC107679239,LOC793997 other downstream 130722 12122880 ~ 12135939 (-)
G52172 NA other downstream 237962 12028050 ~ 12028699 (-)
LOC122348489 NA other downstream 465764 11793143 ~ 11800897 (-)
csrp3 csrp3,LOC107662347,LOC107745726,LOC107557279 other downstream 652736 11607608 ~ 11613925 (-)
G51969 LOC107563202,LOC107706937,LOC107674748,LOC107594738,LOC107741044 other downstream 1012412 11252230 ~ 11254249 (-)
sstr1b LOC107558412,LOC107731890,LOC107679244,LOC107597921,LOC107683583,LOC107710341,LOC557645 other upstream 92583 12363597 ~ 12373708 (-)
fcer1g LOC107738058,LOC107597895,LOC107683511,LOC107558432,LOC107679284,LOC107731897 other upstream 362866 12633880 ~ 12638873 (-)
G52473 amdhd1,LOC107683519,LOC107738078 other upstream 499318 12770332 ~ 12772437 (-)
LOC122347901 NA other upstream 691363 12962377 ~ 12964067 (-)
LOC122348718 zgc:194655,LOC107683588,LOC107679278,LOC107731931,LOC107558416 other upstream 693110 12964124 ~ 12964964 (-)

Expression


Co-expression Network