G52475


Basic Information

Item Value
gene id G52475
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 12769452 ~ 12769833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU77752
ATACAAACAGCACAATTTATTTGTCATTGTGCCACCAATAacttttacagtgtaaaaaatgactaacaatttcacaaagaaaagagacacAGCTTCACATAAAACTGAGACAAACTGCAAAATAACCAATAAATCGTCCAATCCGATTAGAAAAAGAAATCAAGCCACTCTTCATTCTCTCATCTCGccatcttcttcctcttcttctacTCCTCTTATgtacaaaacattattacacTGATGAGCACCTCGCCAAGATGACCCGCTAATGCTCCGTCCACATACTCTTCTGTGTTGGCCAGCT
>TU77753
ATACAAACAGCACAATTTATTTGTCATTGTGCCACCAATAacttttacagtgtaaaaaatgactaacaatttcacaaagaaaagagacacAGCTTCACATAAAACTGAGACAAACTGCAAAATAACCAATAAATCGTCCAATCCGATTAGAAAAAGAAATCAAGCCACTCTTCATTCTCTCATCTCGccatcttcttcctcttcttctacTCCTCTTATgtacaaaacattattCACCTGATGAGCACCTCGCCAAGATGACCCGCTAATGCTCCGTCCACATACTCTTCTGTGTTGGCCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77752 True 304 lncRNA 0.38 2 12769452 12769833
TU77753 False 304 lncRNA 0.38 2 12769452 12769833

Neighbor

gene id symbol gene type direction distance location
ntn4 ntn4,LOC107738054,LOC107683517,LOC107548811,LOC107558428,LOC107731949 coding downstream 2977 12755773 ~ 12766475 (-)
dock11 dock11,LOC107683516,LOC107738079,LOC107731893,LOC107679272 coding downstream 13823 12693952 ~ 12755629 (-)
il13ra1 NA coding downstream 78164 12684137 ~ 12691288 (-)
trnar-ucu_9 NA coding downstream 86221 12683158 ~ 12683231 (-)
kirrel1a kirrela,LOC107597897,LOC107738056,LOC107731894,LOC107558429,LOC107683514,LOC107679226 coding downstream 88770 12648829 ~ 12680682 (-)
si:ch73-71d17.2 LOC107548808,LOC107731942,LOC107558426,LOC107683566 coding upstream 3867 12773700 ~ 12779805 (-)
man2b2 man2b2 coding upstream 41963 12811796 ~ 12818804 (-)
LOC122349348 ccnb1ip1,LOC107738046,LOC107731913,LOC107679269,LOC107683567 coding upstream 54197 12824030 ~ 12826331 (-)
tmem179ba zgc:110591,LOC107683591,LOC107675496,LOC107595317,LOC107731938 coding upstream 304169 13074002 ~ 13078973 (-)
prox3 prox1b,LOC107597067,LOC107675492,LOC107731933,LOC107683531,LOC107595310,LOC107738073 coding upstream 309628 13079461 ~ 13084001 (-)
LOC122348240 NA non-coding downstream 171878 12596958 ~ 12597574 (-)
G52295 NA non-coding downstream 468231 12301001 ~ 12301221 (-)
G52294 NA non-coding downstream 469346 12299817 ~ 12300106 (-)
G52257 NA non-coding downstream 498438 12266661 ~ 12271014 (-)
G52288 NA non-coding downstream 503296 12262841 ~ 12266156 (-)
G52481 NA non-coding upstream 34169 12804002 ~ 12804373 (-)
G52480 NA non-coding upstream 34665 12804498 ~ 12807491 (-)
G52490 NA non-coding upstream 38621 12808454 ~ 12808901 (-)
G52502 NA non-coding upstream 89203 12859036 ~ 12867190 (-)
LOC122348179 si:ch211-163b2.4,sb:cb449,LOC793338,LOC100001444,LOC107575383,LOC107708447 non-coding upstream 107854 12877687 ~ 12878263 (-)
fcer1g LOC107738058,LOC107597895,LOC107683511,LOC107558432,LOC107679284,LOC107731897 other downstream 130579 12633880 ~ 12638873 (-)
sstr1b LOC107558412,LOC107731890,LOC107679244,LOC107597921,LOC107683583,LOC107710341,LOC557645 other downstream 395744 12363597 ~ 12373708 (-)
zfta LOC107711891,LOC107660744,LOC107731900,LOC107679239,LOC793997 other downstream 633513 12122880 ~ 12135939 (-)
G52172 NA other downstream 740753 12028050 ~ 12028699 (-)
LOC122348489 NA other downstream 968555 11793143 ~ 11800897 (-)
G52473 amdhd1,LOC107683519,LOC107738078 other upstream 499 12770332 ~ 12772437 (-)
LOC122347901 NA other upstream 192544 12962377 ~ 12964067 (-)
LOC122348718 zgc:194655,LOC107683588,LOC107679278,LOC107731931,LOC107558416 other upstream 194291 12964124 ~ 12964964 (-)
LOC122347902 LOC107738036,LOC107597071,LOC107683528,LOC107731901,LOC107558414,LOC107679225 other upstream 198504 12968337 ~ 12991221 (-)
zgc:194312 zgc:194312,LOC107683543,LOC107597058,LOC107738022,LOC107675500,LOC107595297,LOC107731916 other upstream 475438 13245271 ~ 13251205 (-)

Expression


Co-expression Network