ntn4 (ntn4,LOC107738054,LOC107683517,LOC107548811,LOC107558428,LOC107731949)


Basic Information

Item Value
gene id ntn4
gene name ntn4,LOC107738054,LOC107683517,LOC107548811,LOC107558428,LOC107731949
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 12755773 ~ 12766475 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243832.1
TCTTCAAAGCTGCTGTCACTCAGAGGGGCTCCAGAGTCTAGCTCAGGTGTTACGGAGCGGCACGCGCGGCCCCACGAGTCGCGCTCAGAGCAGAGCACGCGCACGGCTCGCTTTCACCGAGAGCAGCGCGCGGCCCCGGGACAGAAACCACTCCGGCAGACGCGTATTCGGGCTCGCACGCCAATGGCGTTGTCGCGCGAGACTTGCGTCCCGTTTCAGCCGAACAGTTTCTGTTTGTTGTGGGAGCAGATCGCCCCCGCTCAGCGTTTGCGCACCTGGCCAACCCACGCCAGTGAAGTCGTGCTCCTACATGCAATCTGAAAGGCTCCGGAGCGGAATCGGGTTCCCGTGCGCATTGTGGATTAAAAGCCCTCGCGGGGTTTGATACGTGtaatttgtggcttttttttcCTGGATTGATGACTAATATGGAGCTGCCAGGGAGATGCGTGTTGTTCGCAGCGCTCCTGATGAGCGTTCCTCACCCCGTGCGTTCAGGGTGTGAGAATCGGGTGTGTAATCCACGCATGGGGAACCTGGCAGTCGGGCGTCCTGTACGGACAATTTCTCAGTGTGGCTCGTCCTCTCCAGAACGCTACTGTAGGTCTGTCTACGAAATGAACAGATGTGAGTTGCATTGCGAGGTGTGTGACTCTTCAGTGCTGCACCACGCACACCCACCTGCGTCCATGACGGACTCTCCCTTCAAGCACCCACCCACCTGGTGGCAGTCAGCTCTGGGTGTTTCCACTGAAACTCTGCAGCTGGATTTAGAGGTGGAATTTTACTTCACCCACCTCATTATCATATTTCGGTCACCACGCCCTGCTGCCATGGTGATGGAGCGCTCGCAGGACTTTGGGCGCACGTGGAGCGCTCTGATGCTGTATGCACATAACTGCAGTGAAGTGTTCGACCTGGAGGACGGACAGAGCTGCACTCAGAAGTACTCTGCAGCAGAGCCTTGCAGCAATGGAGAGgtcaTTTACCGTGCTCTGTCACCCTGGGACAAACTGGATCCATACAGCATGAATACCCGAGCCCACCTTAGCATCACTAACATACGGATTCGCCTGCTTCAGCCGCAGTCCTGCTTCTGTCAACAAAAACCTCCTGACGCCAACATGCTCACTGCCCACTATGCCATCTACGACCTCATTTTAAAGGGAGGCTGTTTGTGCCATGGACACGCAGATCAGTGTGTGCCTGCTAGTGACCAACAGATCACACACCCTCCCGTTAAACACATGGTGCAcggtaaatgtgtgtgtcggCATCACACGGCTGGGGATCATTGTGAACGCTGCGATCGCCTCTACAATGACCGACCGTGGCAACCAGCTAGCGGCTTAACCGGAGAAGCTCATCAGTGTGTTAAGTGCAAGTGTAACGGCCATGCAGAGAGCTGTCACTTTGACAAAACCGCATGGCTACGCTCGGGTCAGCGGAGTGGAGGTGTGTGTGACTGTCTTCACAACACCAGCGGCCGTCACTGCCAACACTGCCAGAGCGGCTTCTACAGACACCCGCAGAGACCCTCGACTGCCCCGGATTCCTGCAGACCTTGCGAGTGTGACCGTGCTGGTTCCTCATACTGTGACCCTGATAATGGAGACTGCGTCTGTAAGCCGGGGGTGGCTGGACCACACTGTGaccagtgcatgctgggatactgGGGTTTCGATGAATATGGTTGCAAGCCCTGCCAGTGTGCTGGTGATTGTGACTCTTACACAGGAGACTGTATGATTAGGTCTGAATTTGATCACAACAGCACAGCAGAAAATCATCTGTTTCGAACAGAAGAGCTTTTCTCCGCCCTTAGTCATCCagACAAATGTGTATGCAAACAGCAAGCACTTGGAAACAGCAAAATATTCTGCagtgtaaaatatgtttacGCAGTGAAGGTGCGAGTGCTGGGTGCTCATGATAAGGGCTCTCACGCAGAGGTGGATGTTAAGGTTCTTAAGGTGCTGTGGGATAACTCGCGCCTCAGGCTCTCTCGTGGAAATCGGACTCTTTATCCTGAGTCTTGGACCTCACGAGGCTGCACATGCCCTGTGCTTTTCCCAGGGTTGGAGTATCTTGTCATTGGACACGAGGATGTGAAAAAAGGGCGTCCTATGGTTAACATGAAGAGTATAGTGAAGCCATGGAGACCCAACTTGAGCGGAAAAGTTCATCAGCTTCTGAAAACCAAATGTAGCTGAGAAACctagagacacagagagacactgaATATGTATCTTCCGTGGCACACGTCAGCTTGGCCTTTATTTGATTATGATCATTCTTCATGCTCTGAACCATACTAATGCTTTAaaacagtggttctcaactttttttttgactctAAAACCAAGAGTTAATATGTACATCtggtaataataaatgaacttGAATGAATTTAATATGACAGTTCAATCTTGTTAATAGGggtgtgtctgtgtatttagGATTATGTCAATATAAATAATCATCTTAAAATTATATTGAGAGCCACtgctttaaaaacagctgtgtaTTTGCTAGCTATCAGATGAATACTAGGACTGTACagaatgtataatatatatgtatgtatatgtatatataaaataatatatgtagtTTTTTATATCATAACTAATCATGTAAATAGCATGCATTTTGTACACATGAAAATACAATGCTCGTATGCAATATAAGATTCCTATGGTTAtgtcacaattttaaaaattaagtttgtGGTTTAATACCAACGAAGATCACTAGGTGTCAGCCtatgattttattaatgagCATGTACGAACATATTCAAAAGAACACGTATTCAGGTGTGAAACGTGCCGATTTATTGCTGAAACGATTGTTAAGGCTCAGGCTATCTTAAAAAACGGCACaatatgtaaaaacaacaacaacaacaactttattCCGCATTGTTTCTGGAAGCTcatcattatgtatatatatattattttcatattttaaaacattacatattaaaacaagAATGCAATTAA

Function

symbol description
ntn4 Acts upstream of or within blood vessel morphogenesis. Predicted to be located in extracellular region. Predicted to be part of laminin complex. Is expressed in blood vessel; brain; neural rod; tail bud; and trunk. Orthologous to human NTN4 (netrin 4).

NR:

description
PREDICTED: netrin-4

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K06845 NTN4; netrin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243832.1 True 3008 mRNA 0.48 10 12755773 12766475

Neighbor

gene id symbol gene type direction distance location
dock11 dock11,LOC107683516,LOC107738079,LOC107731893,LOC107679272 coding downstream 144 12693952 ~ 12755629 (-)
il13ra1 NA coding downstream 64485 12684137 ~ 12691288 (-)
trnar-ucu_9 NA coding downstream 72542 12683158 ~ 12683231 (-)
kirrel1a kirrela,LOC107597897,LOC107738056,LOC107731894,LOC107558429,LOC107683514,LOC107679226 coding downstream 75091 12648829 ~ 12680682 (-)
ndufs2 ndufs2,LOC107738057,LOC107683510,LOC107558431 coding downstream 108393 12639184 ~ 12647380 (-)
si:ch73-71d17.2 LOC107548808,LOC107731942,LOC107558426,LOC107683566 coding upstream 7225 12773700 ~ 12779805 (-)
man2b2 man2b2 coding upstream 45321 12811796 ~ 12818804 (-)
LOC122349348 ccnb1ip1,LOC107738046,LOC107731913,LOC107679269,LOC107683567 coding upstream 57555 12824030 ~ 12826331 (-)
tmem179ba zgc:110591,LOC107683591,LOC107675496,LOC107595317,LOC107731938 coding upstream 307527 13074002 ~ 13078973 (-)
prox3 prox1b,LOC107597067,LOC107675492,LOC107731933,LOC107683531,LOC107595310,LOC107738073 coding upstream 312986 13079461 ~ 13084001 (-)
LOC122348240 NA non-coding downstream 158199 12596958 ~ 12597574 (-)
G52295 NA non-coding downstream 454552 12301001 ~ 12301221 (-)
G52294 NA non-coding downstream 455667 12299817 ~ 12300106 (-)
G52257 NA non-coding downstream 484759 12266661 ~ 12271014 (-)
G52288 NA non-coding downstream 489617 12262841 ~ 12266156 (-)
G52475 NA non-coding upstream 2977 12769452 ~ 12769833 (-)
G52481 NA non-coding upstream 37527 12804002 ~ 12804373 (-)
G52480 NA non-coding upstream 38023 12804498 ~ 12807491 (-)
G52490 NA non-coding upstream 41979 12808454 ~ 12808901 (-)
G52502 NA non-coding upstream 92561 12859036 ~ 12867190 (-)
fcer1g LOC107738058,LOC107597895,LOC107683511,LOC107558432,LOC107679284,LOC107731897 other downstream 116900 12633880 ~ 12638873 (-)
sstr1b LOC107558412,LOC107731890,LOC107679244,LOC107597921,LOC107683583,LOC107710341,LOC557645 other downstream 382065 12363597 ~ 12373708 (-)
zfta LOC107711891,LOC107660744,LOC107731900,LOC107679239,LOC793997 other downstream 619834 12122880 ~ 12135939 (-)
G52172 NA other downstream 727074 12028050 ~ 12028699 (-)
LOC122348489 NA other downstream 954876 11793143 ~ 11800897 (-)
G52473 amdhd1,LOC107683519,LOC107738078 other upstream 3857 12770332 ~ 12772437 (-)
LOC122347901 NA other upstream 195902 12962377 ~ 12964067 (-)
LOC122348718 zgc:194655,LOC107683588,LOC107679278,LOC107731931,LOC107558416 other upstream 197649 12964124 ~ 12964964 (-)
LOC122347902 LOC107738036,LOC107597071,LOC107683528,LOC107731901,LOC107558414,LOC107679225 other upstream 201862 12968337 ~ 12991221 (-)
zgc:194312 zgc:194312,LOC107683543,LOC107597058,LOC107738022,LOC107675500,LOC107595297,LOC107731916 other upstream 478796 13245271 ~ 13251205 (-)

Expression


Co-expression Network