G52772 (LOC107738015,LOC107683576,LOC107597053)


Basic Information

Item Value
gene id G52772
gene name LOC107738015,LOC107683576,LOC107597053
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 13348517 ~ 13351621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU78218
TGCATGGAGTTGATATGTTTCGGATGAGACGCTCCATGCTCTGAATAAACCAAAGAGGAGTTTGAATCATGTGGAAGGTGCTGCGTTAAGTCCAGGCCGTCGCTGTCTTCAGGTTGTAGCTGGAGCCAAACTGGAAGATTGAACCTGCTGGTGGAGGGTGACGGCAAAGTGGGAAAAAACTGCAGCGACCCATCTGTCTGAGTTTGTATCTGTGACTGGCTCAAGATCTGGCCGGGTATGAAGTGTTGAGGTCGTTTAGGAGGTGAAAAAGATGGCGCAGGCAGGGGCGTCGGCGGTGGGCTAAGAACCAGAGGGAAAGAGAGGGCATATGACGGAGGAGTAGAGCTGCTAAAGCTGCTCTGCTCTCCTCCACCCGGCATTCGGGTGGCGTTACGACTGCAAAATGCCTCTGAGAATGAATCCAGTTTTTGTTGCTGTCGCTCAGTTGTTTCATAACTCTCTGATGCTTCTTGTTGGTGGCAGTGAGAGCTCCAGTCGGCCTCATAAACTCCAGCTTGCGCCTTGTTCCTGTTCAGTCCCATCGAGGACACAGGGGACGTATTCCCCCAGTAAGAAGCGTTCCCCGTTTGATCTATTCCACTCAGAGCGCTCCCGGGGCCATCGGTGGCTTCACACGGGACCTCAAACGGGCCGAGCCCACTTAAAGAACCTTGCTGGTAAAGGTCGTGGCTTGGCCTTTGACCTTCTGTCTGGTGTCGGAACATGGGAGCGAAGGAGAGCGGCTCGGGAGATGTATGGTCAGCCATGTGGCTTGCTGCAACTTTGAGTTATAGGACGCTCATCgca
>TU78220
ATTGAGTTGGGAAGGTTATTCCACCAGAAgtgaacatttaatttataatttaaaagtctgtgaaagtgattttgGGCCTCTTTGACATGATACAATAAAGCGTTCACTAGCAGAACACAAGCTTCTAGACACAAAAGTCTGAAGTTATGGATTTAGGAAAAAGGATGCAGATCATGCTGATCTGATGCTCAAGAAATAGTTCTTGTTATTATCAATCTTACAAACATGATCTGGATACTTtgaatagaaataataattttttttgtaacattctaaatgttagtaacactttacaataaagtgtcatttgtattaactaacatgaacaatgaacaatgcatttattacactatttattattttttgttaatgttagttcatCAAAATACAGTTGTTTATATTTCATTCGTGTTAGTACACGGTGCattagctaatgttaacaaattcaacttgtgattttaaaaatcccttagtaaatgctgaaattaacattaataatacaagCTGCGCTCACGGTTAGTTCATGTTTACTGATGTTGTTAGccaatgttaactaatgaaaaCGATCCATTAAAttgatatataaaaagtattaatttgtttaGAACGTCTTAAAAgattttactgaccccaaacttttgaaaggtacaaaatgatttaataaatgagtGGTCTCTTGCCTGTGTGCTGGAAGACCCCAGAGATTTGTTTGAGGACTCTGGACCGAAGTTTAGTCCACAACTGAATCGTGTTCCTTCTCCTGGCCCTGACCCCTGCACGTGGAGACTAGACTGGTGTAGAGAAGGTCCAAATGAGTGAGAGGCTTGCCCcatctgtcaaaataaaagaattgcTTGTATATAacataatgaatatttattgcCGTCTTAAACAgcttaaagtatatttaaattaaatgagctGCTTTGACATTAAAGCTATTGATGCATCAGTCAAATATGCTTGACCAAGCTGACAATCAAGTAGACCTGAGGCCATGTCATGTGATCTTCAGATGTCACGGGAACGTGACCCAATTCTTGTGTCACGGAGGCCTGATGATGGTGATGTTGAGTCAGTATAGGGTTGAGGGACATCTGCAGTGAACAGTCTAAGAAAGAAAAGCACGTGCTTTGTTAAAATCGCACTTAAGATTTTACACACAAAGTATAGCATAATGCTGCACGTACCTTTCTGCATGGAGTTGATATGTTTCGGATGAGACGCTCCATGCTCTGAATAAACCAAAGAGGAGTTTGAATCATGTGGAAGGTGCTGCGTTAAGTCCAGGCCGTCGCTGTCTTCAGGTTGTAGCTGGAGCCAAACTGGAAGATTGAACCTGCTGGTGGAGGGTGACGGCAAAGTGGGAAAAAACTGCAGCGACCCATCTGTCTGAGTTTGTATCTGTGACTGGCTCAAGATCTGGCCGGGTATGAAGTGTTGAGGTCGTTTAGGAGGTGAAAAAGATGGCGCAGGCAGGGGCGTCGGCGGTGGGCTAAGAACCAGAGGGAAAGAGAGGGCATATGACGGAGGAGTAGAGCTGCTAAAGCTGCTCTGCTCTCCTCCACCCGGCATTCGGGTGGCGTTACGACTGCAAAATGCCTCTGAGAATGAATCCAGTTTTTGTTGCTGTCGCTCAGTTGTTTCATAACTCTCTGATGCTTCTTGTTGGTGGCAGTGAGAGCTCCAGTCGGCCTCATAAACTCCAGCTTGCGCCTTGTTCCTGTTCAGTCCCATCGAGGACACAGGGGACGTATTCCCCCAGTAAGAAGCGTTCCCCGTTTGATCTATTCCACTCAGAGCGCTCCCGGGGCCATCGGTGGCTTCACACGGGACCTCAAACGGGCCGAGCCCACTTAAAGAACCTTGCTGGTAAAGGTCGTGGCTTGGCCTTTGACCTTCTGTCTGGTGTCGGAACATGGGAGCGAAGGAGAGCGGCTCGGGAGATGTATGGTCAGCCATGTGGCTTGCTGCAACTTTGAGTTATAGGACGCTCATCgcatctgaaaactgaaaagaCACACAAAGACAATCAAAAGCCATCAAAAGCCTTTCAACCTCATGAACGTTAGTAAGTCAAaccacacaaacaacacacTGAGACATATTTTCCCAACCGCTGAATGGTTggtctttgtctttctctgtAACAGTTGgtttaaaagacaaatattcCAACAGAAATGCGGAAACGTtacagcagagaaaaaaaaactgagaaacatGTACAGCTATCGAAAGAAAATAAACGGCCTTTGTTCTATGGCTTTTGCTTATCTTCTTACTTTCTTTTTCATACTGTTCGCCCAGTACTCACCAGAGCTTCGCTTTCTTTATCCATAACCTGTTTCTGTTCATGTGCTATCCGTTCATGTCGACCTGAACGCGTGCGATCTTTCTCTCCAGCTAACAAAATTAAGATACAGACACGTGTGAAAGCAGGCGATCTTTCTAGCTCTTCCTCGCTTGTGCGCATTATCATACTTAAATGTGAAAACTCTTTCTCACACATATTTCTTTCACAGGTGCCACCGATCAAAAGGTAAGTCTTCGGTTGTCATAGAGTCACCCCCTCCCTTAAAACCCTGAACCGAAAACCACATCCTGAGGAAGCAGTCACGGATCTCcctctatctgtctttctatatctctctccctcttctgtCTTGCTCTCCTCCTTAACCTCTTTTCCTTCTCAGTCTATTTTTATCCATTCTCCTACATCACATACTCACAGTCTTCCATAGATCACCCATCTTCTCTCAGTTCAGTGGGGGTCTCAGTCATGGTAAACAGACTGACGGTAGATCAAAAAGGGTCCGCTCCGACCTAACCTTACtttagaatactttttttttttacaattaacaaaagctGCAGGATGAAAGCGTGTTGTCTTCAATGATGTTGGCAAGCTATGAGACCTTTAGGGCTTATTGTGCTTGCGGCATGCGTGTTATCTCGAGATTCGCATCTGTTGTGGTTAGTGACTTGAGTATAAAGAACGTAAGTGTTGTCAAACTGGCAGGTAAGGCGTGGGTGTGCGTGTAAGTATATACGACACGAGTGAGAGGCAAAGCTTCctgtcaagtgtgtgtgtgtgtg

Function

NR:

description
PREDICTED: uncharacterized protein LOC107738015

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78218 False 807 TUCP 0.54 1 13349620 13350426
TU78220 True 3105 TUCP 0.42 1 13348517 13351621

Neighbor

gene id symbol gene type direction distance location
cnpy4 cnpy4,LOC107738087,LOC107683593,LOC107702065,LOC107707051 coding downstream 44277 13301585 ~ 13304240 (-)
trnai-uau_1 NA coding downstream 46583 13301841 ~ 13301934 (-)
trnai-uau NA coding downstream 47487 13300937 ~ 13301030 (-)
ntn5 ntn5,LOC107738020,LOC107597057,LOC107683546,LOC107707055,LOC107702064,LOC107595331 coding downstream 49134 13281894 ~ 13299383 (-)
si:ch73-335l21.4 LOC107738024,LOC107597061,LOC107683540 coding downstream 137897 13209296 ~ 13210620 (-)
zpax4 NA coding upstream 5151 13356772 ~ 13361799 (-)
si:dkey-19b23.8 si:dkey-19b23.8,LOC107683552,LOC107738066,LOC107576515,LOC107707061,LOC108434612 coding upstream 17749 13369370 ~ 13374471 (-)
LOC122349460 cyb5d1,LOC107738084,LOC107707052,LOC107595290,LOC107702060,LOC107683579,LOC108434590 coding upstream 87746 13439367 ~ 13441504 (-)
dnajc3b dnajc3b,LOC107683555,LOC107738010,LOC107707053,LOC107702051,LOC107595288 coding upstream 90026 13441647 ~ 13448493 (-)
cldn15a cldn15a,cldn15,LOC107738083,LOC107597092,LOC107683556,LOC107707054,LOC107702050,LOC107595325 coding upstream 97515 13449136 ~ 13451412 (-)
G52771 NA non-coding downstream 4725 13343573 ~ 13343792 (-)
G52769 NA non-coding downstream 8201 13339408 ~ 13340316 (-)
G52766 LOC107738018,LOC107683574,LOC107597056,LOC107702063,LOC107707057 non-coding downstream 10035 13332735 ~ 13338482 (-)
G52765 NA non-coding downstream 18379 13329295 ~ 13330138 (-)
G52663 NA non-coding downstream 91154 13252361 ~ 13257363 (-)
G52773 si:dkey-19b23.10,LOC107702062,LOC107707058,LOC107738015,LOC107683576,LOC107597053 non-coding upstream 365 13351986 ~ 13353443 (-)
G52786 NA non-coding upstream 100186 13451807 ~ 13452454 (-)
G52787 NA non-coding upstream 102297 13453918 ~ 13454297 (-)
G52789 NA non-coding upstream 124481 13476102 ~ 13484155 (-)
G52803 NA non-coding upstream 144092 13495713 ~ 13497050 (-)
zgc:194312 zgc:194312,LOC107683543,LOC107597058,LOC107738022,LOC107675500,LOC107595297,LOC107731916 other downstream 97312 13245271 ~ 13251205 (-)
LOC122347902 LOC107738036,LOC107597071,LOC107683528,LOC107731901,LOC107558414,LOC107679225 other downstream 357296 12968337 ~ 12991221 (-)
LOC122348718 zgc:194655,LOC107683588,LOC107679278,LOC107731931,LOC107558416 other downstream 383553 12964124 ~ 12964964 (-)
LOC122347901 NA other downstream 384450 12962377 ~ 12964067 (-)
G52473 amdhd1,LOC107683519,LOC107738078 other downstream 576080 12770332 ~ 12772437 (-)
chd3 chd3,LOC107702058,LOC107738011,LOC107707064,LOC107683578 other upstream 44218 13395839 ~ 13437648 (-)
G52871 NA other upstream 545875 13897496 ~ 13898323 (-)
LOC122347915 NA other upstream 713394 14065015 ~ 14068500 (-)
G52897 LOC107558424,LOC107731920 other upstream 717492 14069113 ~ 14073699 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other upstream 723922 14075543 ~ 14090441 (-)

Expression


Co-expression Network