G52871


Basic Information

Item Value
gene id G52871
gene name NA
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 13897496 ~ 13898323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU78368
ccattaccctagctgaggtcactgaggtggttgagaagctcctctgtggcaaggcaccaggggtggacgagatccgcccggaatacctcaggtctctggatgttgtggggctgtcttggctgacacgcctctgcagcatcgcgtggacgcgggggaaagtgcctctggactggcagacgggggtggtggttcctcttttcaagaagggggaccggagggtgtgctccaactatagggggatcacacttctcagcctccctgggaaagtctatgccagggtactggagaggagaatccgcccgatagttgaacctcggcttcaagaggaacaatgcgggtttcgccctggacgtggaacactggaccagctctataccctctccaggatgctggagggttcctgggagtttgcccaaccagtctacatgtgttttgtggatttggagaaggcattcgaccgggttcctcgtggtgtcctgtggggggtgctctgggaatatggggtaaggggccctttgctaagggctgtccgatccctgtatgatcagagcaggagcttggttcgcattgccggcattaagtcagacttgtttccagtgcatgttggactccgacagggctgccctttgtcaccggtcctgttcattatttttatggacaggatttctaggcgcagtcaggggccggagggggtctggtttggtgaccacaggatagcttctctgctttttgctgatgatgttgttctgttggctgcatctggccaagacctacagtgtgtgctggggcggtttgcagctgagtgtgaagcggcagggatgaaaatca

Function

NR:

description
PREDICTED: large neutral amino acids transporter small subunit 1-like

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78368 True 828 TUCP 0.56 1 13897496 13898323

Neighbor

gene id symbol gene type direction distance location
LOC122349518 LOC107683502,LOC107710157,LOC107597890,LOC107731947,LOC107679291,LOC107558439 coding downstream 63473 13830775 ~ 13834023 (-)
LOC122347905 LOC107738090,LOC107683590,LOC107597097,LOC107675488,LOC107595316,LOC107731889 coding downstream 115192 13780136 ~ 13782304 (-)
fis1 fis1,LOC107738082,LOC107597091,LOC107702049,LOC107595287,LOC108434607 coding downstream 436962 13457235 ~ 13460534 (-)
cldn15a cldn15a,cldn15,LOC107738083,LOC107597092,LOC107683556,LOC107707054,LOC107702050,LOC107595325 coding downstream 446084 13449136 ~ 13451412 (-)
dnajc3b dnajc3b,LOC107683555,LOC107738010,LOC107707053,LOC107702051,LOC107595288 coding downstream 449003 13441647 ~ 13448493 (-)
LOC122348562 LOC563681,LOC107738039,LOC107679277,LOC107558415,LOC107735524 coding upstream 17426 13915749 ~ 13917329 (-)
LOC122348557 LOC107683524,LOC107738038,LOC107574337,LOC107731927 coding upstream 24642 13922965 ~ 13927510 (-)
LOC122348559 NA coding upstream 29446 13927769 ~ 13931950 (-)
LOC122348558 slc7a7,LOC107738042,LOC107683525,LOC107731885,LOC107558406,LOC107574338 coding upstream 38468 13936791 ~ 13944925 (-)
LOC122347908 LOC107750620,LOC107563003,LOC107687055 coding upstream 93123 13991446 ~ 13993253 (-)
G52870 NA non-coding downstream 8342 13888468 ~ 13889154 (-)
G52850 NA non-coding downstream 31269 13866027 ~ 13866227 (-)
G52848 NA non-coding downstream 35594 13861617 ~ 13861902 (-)
G52841 NA non-coding downstream 78721 13817968 ~ 13818775 (-)
G52832 NA non-coding downstream 113771 13783313 ~ 13783725 (-)
G52872 NA non-coding upstream 713 13899036 ~ 13899822 (-)
G52882 NA non-coding upstream 15147 13913470 ~ 13915281 (-)
G52884 LOC107683526,LOC107738043,LOC107574339,LOC107731928,LOC107679275,LOC107558419 non-coding upstream 34816 13933139 ~ 13934022 (-)
LOC122348115 NA non-coding upstream 60871 13959194 ~ 13959936 (-)
LOC122349579 LOC107750620,LOC107686638,LOC107687055,LOC107746308,LOC107701458,LOC107561921 non-coding upstream 92495 13990818 ~ 13991384 (-)
chd3 chd3,LOC107702058,LOC107738011,LOC107707064,LOC107683578 other downstream 459848 13395839 ~ 13437648 (-)
G52772 LOC107738015,LOC107683576,LOC107597053 other downstream 545875 13348517 ~ 13351621 (-)
zgc:194312 zgc:194312,LOC107683543,LOC107597058,LOC107738022,LOC107675500,LOC107595297,LOC107731916 other downstream 646291 13245271 ~ 13251205 (-)
LOC122347902 LOC107738036,LOC107597071,LOC107683528,LOC107731901,LOC107558414,LOC107679225 other downstream 906275 12968337 ~ 12991221 (-)
LOC122348718 zgc:194655,LOC107683588,LOC107679278,LOC107731931,LOC107558416 other downstream 932532 12964124 ~ 12964964 (-)
LOC122347915 NA other upstream 166692 14065015 ~ 14068500 (-)
G52897 LOC107558424,LOC107731920 other upstream 170790 14069113 ~ 14073699 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other upstream 177220 14075543 ~ 14090441 (-)
G52917 LOC105896813 other upstream 246183 14144506 ~ 14145280 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other upstream 1075380 14973703 ~ 14975168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G217219 NA non-coding NC_053133.1 CM020930.1 157558 ~ 158565 (-)