LOC122348559


Basic Information

Item Value
gene id LOC122348559
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 13927769 ~ 13931950 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244122.1
ACCATAAATTGACCAGGCTGGGTTGCTTGATGTCAGAGTGCGTTCTGCTGGCCGCCTGAGCACATCGATAGGGCTCCACAGAGGATCTCGTCTTACCTGTAGTTTAGTAACGTTGCAGgaagaaaatacaatttcattttaaacgtAAAAATGACGGAAGCTGATAACTGGGTTGAAGATTTGGAAGAAAACGCCGCGATAGCAAGAGTCTTCCAGAACTTGAATATCTACGGTGAACGTATTGGGGAATCGGGTCGTAATTCTGAAGAAGGGCTATCAAATGAAAGAGTGGACTTTGTTGCATTGCCTTGTGGTCATCGAATGCCGACAGACTACATCTTTTCCTGGTTCAAGTATTACATTAAACAGAAAAAGGCTGAATTTTCCTGCCCTTGCTTTAATGTTGAGGGGGAATCATGCAGTGTAAATCTCTCTTATCAGGAAATCTGTCAGCTGATGCCACTGACAGACGAGCAAAGGGAATTTCTAGAGGAGAGTCTTGCTTCTCTCGTTGCTAGAATGCTGTTTGACATTAAAATGTGTCCTGGATGTCAGTCTTATGTGGAAAGACAAGATGGAGGTAACCTGTGCGTACGCTGCACTATCTGCACGGCCAACCTGAATCGAAAATACTACTTCTGCTGGAAGTGCGGCAGGGACTGGAAGGGGCCGTACACAAATGCTGTGCGGTGTGAAAATGACGGCTGTGGAGAGAGAATGAGCACTTCAGAGCCACTTATACCATGCAATCCTgagtataaaaagaaaatgcttcaAGAAAAGGGAAACGAAaTATACCCAGTAAAAGACAAATCCACTGACAGAAAACGTTTGGCACTGCTAATCAACAATATAGAATTTAAAAACTTACAAAACAGGGCCGGGGCAGACAAGGATGAACGGAGTATGGAAGTGCTGCTCGAAGGTTTGGGTTACACGGTGATCACACTCAGAGACCTCAGTGCACAGGGTATATCTGCTGCCTTGCGAGACTTTGCCCAGCGAGAGGAACACGCCCATTCGGACAGCTGCTTTGTGGTGCTGATGTCCCATGGAGATGCCAGCGGAATCAGTGGGATTTTTGAGTCTCCCGAGAATAAAGATGAAGAGGACGTTTTTCAAACAGATGAAATTTTCAATTGCTTGAACTCTCTGAACTGTGCTAGATTGAGAGACAAGCCCAAAATCATCCTTATCCAGTCGTGTAGAGGTGAGCCTCATCCATTTCAAGCGACATTCTTTGGCAAATGCTGCCCTCATGTTATAGATCAAAAAGGCGACGTGCTTGTCCAGGATGCTGTACCAAGATTCAGGAAACATCACCTTGAAAAAGACTTCTGCTGCCTGAGATCATGCACTCCAGATACTGTGTCCTACAGAAACGAAAAGAAAGGCTCAAATTTCATCCAAGACACTGTAGAAATATTTAATCAGTATGCCCACCAGGATGATATCGAGGAGCTCTTCAGAAAGGTCCTTGACAAGTTTAGGAATTCACATCCTGAACAAATGCCATGCAAGGAAAGAACAACATTATCTAAGAAGTTCTACCTGTTCCCTGGGTTGTAGAACACAGCGAGCACAACTTCTCACCTCGTTAACATGATTTAAGCATGTGTTTATTTCAggagtttgtttaattttaaggaTTTGttatcatttgaatgaatttgcGTGggcatataaacatatttagctTTGTTGTCCAGCTTACAATTTGACTCCCCCAACCAatctataaatgaaaataaataaatgttactatAAGTTGAACTATACTATTACTATCAAATCAAGAAATTAATCTTCTGGATACTTTACTGTGAATATGATGTATTGgatttttatcaattttttttactgcttgtttaaattataaataaattctcGACAGTTTACGTGccaaattacataa
>XM_043244123.1
ACCATAAATTGACCAGGCTGGGTTGCTTGATGTCAGAGTGCGTTCTGCTGGCCGCCTGAGCACATCGATAGGGCTCCACAGAGGATCTCGTCTTACCTGTAGTTTAGTAACGTTGCAGgaagaaaatacaatttcattttaaacgtAAAAATGACGGAAGCTGATAACTGGGTTGAAGATTTGGAAGAAAACGCCGCGATAGCAAGAGTCTTCCAGAACTTGAATATCTACGGTGAACGTATTGGGGAATCGGGTCGTAATTCTGAAGAAGGGCTATCAAATGAAAGAGTGGACTTTGTTGCATTGCCTTGTGGTCATCGAATGCCGACAGACTACATCTTTTCCTGGTTCAAGTATTACATTAAACAGAAAAAGGCTGAATTTTCCTGCCCTTGCTTTAATGTTGAGGGGGAATCATGCAGTGTAAATCTCTCTTATCAGGAAATCTGTCAGCTGATGCCACTGACAGACGAGCAAAGGGAATTTCTAGAGGAGAGTCTTGCTTCTCTCGTTGCTAGAATGCTGTTTGACATTAAAATGTGTCCTGGATGTCAGTCTTATGTGGAAAGACAAGATGGAGGTAACCTGTGCGTACGCTGCACTATCTGCACGGCCAACCTGAATCGAAAATACTACTTCTGCTGGAAGTGCGGCAGGGACTGGAAGGGGCCGTACACAAATGCTGTGCGGTGTGAAAATGACGGCTGTGGAGAGAGAATGAGCACTTCAGAGCCACTTATACCATGCAATCCTgagtataaaaagaaaatgcttcaAGAAAAGGGAAACGAAaTATACCCAGTAAAAGACAAATCCACTGACAGAAAACGTTTGGCACTGCTAATCAACAATATAGAATTTAAAAACTTACAAAACAGGGCCGGGGCAGACAAGGATGAACGGAGTATGGAAGTGCTGCTCGAAGGTTTGGGTTACACGGTGATCACACTCAGAGACCTCAGTGCACAGGGTATATCTGCTGCCTTGCGAGACTTTGCCCAGCGAGAGGAACACGCCCATTCGGACAGCTGCTTTGTGGTGCTGATGTCCCATGGAGATGCCAGCGGAATCAGTGGGATTTTTGAGTCTCCCGAGAATAAAGATGAAGAGGACGTTTTTCAAACAGATGAAATTTTCAATTGCTTGAACTCTCTGAACTGTGCTAGATTGAGAGACAAGCCCAAAATCATCCTTATCCAGTCGTGTAGAGGTGATCAAAAAGGCGACGTGCTTGTCCAGGATGCTGTACCAAGATTCAGGAAACATCACCTTGAAAAAGACTTCTGCTGCCTGAGATCATGCACTCCAGATACTGTGTCCTACAGAAACGAAAAGAAAGGCTCAAATTTCATCCAAGACACTGTAGAAATATTTAATCAGTATGCCCACCAGGATGATATCGAGGAGCTCTTCAGAAAGGTCCTTGACAAGTTTAGGAATTCACATCCTGAACAAATGCCATGCAAGGAAAGAACAACATTATCTAAGAAGTTCTACCTGTTCCCTGGGTTGTAGAACACAGCGAGCACAACTTCTCACCTCGTTAACATGATTTAAGCATGTGTTTATTTCAggagtttgtttaattttaaggaTTTGttatcatttgaatgaatttgcGTGggcatataaacatatttagctTTGTTGTCCAGCTTACAATTTGACTCCCCCAACCAatctataaatgaaaataaataaatgttactatAAGTTGAACTATACTATTACTATCAAATCAAGAAATTAATCTTCTGGATACTTTACTGTGAATATGATGTATTGgatttttatcaattttttttactgcttgtttaaattataaataaattctcGACAGTTTACGTGccaaattacataa
>XM_043244124.1
ACCATAAATTGACCAGGCTGGGTTGCTTGATGTCAGAGTGCGTTCTGCTGGCCGCCTGAGCACATCGATAGGGCTCCACAGAGGATCTCGTCTTACCTGTAGTTTAGTAACGTTGCAGgaagaaaatacaatttcattttaaacgtAAAAATGACGGAAGCTGATAACTGGGTTGAAGATTTGGAAGAAAACGCCGCGATAGCAAGAGTCTTCCAGAACTTGAATATCTACGGTGAACGTATTGGGGAATCGGGTCGTAATTCTGAAGAAGGGCTATCAAATGAAAGAGTGGACTTTGTTGCATTGCCTTGTGGTCATCGAATGCCGACAGACTACATCTTTTCCTGGTTCAAGTATTACATTAAACAGAAAAAGGCTGAATTTTCCTGCCCTTGCTTTAATGTTGAGGGGGAATCATGCAGTGTAAATCTCTCTTATCAGGAAATCTGTCAGCTGATGCCACTGACAGACGAGCAAAGGGAATTTCTAGAGGAGAGTCTTGCTTCTCTCGTTGCTAGAATGCTGTTTGACATTAAAATGTGTCCTGGATGTCAGTCTTATGTGGAAAGACAAGATGGAGGTAACCTGTGCGTACGCTGCACTATCTGCACGGCCAACCTGAATCGAAAATACTACTTCTGCTGGAAGTGCGGCAGGGACTGGAAGGGGCCGTACACAAATGCTGTGCGGTGTGAAAATGACGGCTGTGGAGAGAGAATGAGCACTTCAGAGCCACTTATACCATGCAATCCTgagtataaaaagaaaatgcttcaAGAAAAGGGAAACGAAGGTATATCTGCTGCCTTGCGAGACTTTGCCCAGCGAGAGGAACACGCCCATTCGGACAGCTGCTTTGTGGTGCTGATGTCCCATGGAGATGCCAGCGGAATCAGTGGGATTTTTGAGTCTCCCGAGAATAAAGATGAAGAGGACGTTTTTCAAACAGATGAAATTTTCAATTGCTTGAACTCTCTGAACTGTGCTAGATTGAGAGACAAGCCCAAAATCATCCTTATCCAGTCGTGTAGAGGTGAGCCTCATCCATTTCAAGCGACATTCTTTGGCAAATGCTGCCCTCATGTTATAGATCAAAAAGGCGACGTGCTTGTCCAGGATGCTGTACCAAGATTCAGGAAACATCACCTTGAAAAAGACTTCTGCTGCCTGAGATCATGCACTCCAGATACTGTGTCCTACAGAAACGAAAAGAAAGGCTCAAATTTCATCCAAGACACTGTAGAAATATTTAATCAGTATGCCCACCAGGATGATATCGAGGAGCTCTTCAGAAAGGTCCTTGACAAGTTTAGGAATTCACATCCTGAACAAATGCCATGCAAGGAAAGAACAACATTATCTAAGAAGTTCTACCTGTTCCCTGGGTTGTAGAACACAGCGAGCACAACTTCTCACCTCGTTAACATGATTTAAGCATGTGTTTATTTCAggagtttgtttaattttaaggaTTTGttatcatttgaatgaatttgcGTGggcatataaacatatttagctTTGTTGTCCAGCTTACAATTTGACTCCCCCAACCAatctataaatgaaaataaataaatgttactatAAGTTGAACTATACTATTACTATCAAATCAAGAAATTAATCTTCTGGATACTTTACTGTGAATATGATGTATTGgatttttatcaattttttttactgcttgtttaaattataaataaattctcGACAGTTTACGTGccaaattacataa

Function

GO:

id name namespace
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01370 CASP1; caspase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244122.1 True 1915 mRNA 0.42 11 13927769 13931950
XM_043244123.1 False 1861 mRNA 0.41 11 13927769 13931950
XM_043244124.1 False 1738 mRNA 0.41 10 13927769 13931950

Neighbor

gene id symbol gene type direction distance location
LOC122348557 LOC107683524,LOC107738038,LOC107574337,LOC107731927 coding downstream 259 13922965 ~ 13927510 (-)
LOC122348562 LOC563681,LOC107738039,LOC107679277,LOC107558415,LOC107735524 coding downstream 10440 13915749 ~ 13917329 (-)
LOC122349518 LOC107683502,LOC107710157,LOC107597890,LOC107731947,LOC107679291,LOC107558439 coding downstream 93746 13830775 ~ 13834023 (-)
LOC122347905 LOC107738090,LOC107683590,LOC107597097,LOC107675488,LOC107595316,LOC107731889 coding downstream 145465 13780136 ~ 13782304 (-)
fis1 fis1,LOC107738082,LOC107597091,LOC107702049,LOC107595287,LOC108434607 coding downstream 467235 13457235 ~ 13460534 (-)
LOC122348558 slc7a7,LOC107738042,LOC107683525,LOC107731885,LOC107558406,LOC107574338 coding upstream 4841 13936791 ~ 13944925 (-)
LOC122347908 LOC107750620,LOC107563003,LOC107687055 coding upstream 59496 13991446 ~ 13993253 (-)
LOC122347909 LOC107750620,LOC107687055 coding upstream 70055 14002005 ~ 14002963 (-)
LOC122347911 LOC107750620,LOC107687055 coding upstream 81030 14012980 ~ 14014858 (-)
LOC122347913 LOC107750620,LOC107687055 coding upstream 114330 14046280 ~ 14050414 (-)
G52882 NA non-coding downstream 12488 13913470 ~ 13915281 (-)
G52872 NA non-coding downstream 27947 13899036 ~ 13899822 (-)
G52870 NA non-coding downstream 38615 13888468 ~ 13889154 (-)
G52850 NA non-coding downstream 61542 13866027 ~ 13866227 (-)
G52848 NA non-coding downstream 65867 13861617 ~ 13861902 (-)
G52884 LOC107683526,LOC107738043,LOC107574339,LOC107731928,LOC107679275,LOC107558419 non-coding upstream 1189 13933139 ~ 13934022 (-)
LOC122348115 NA non-coding upstream 27244 13959194 ~ 13959936 (-)
LOC122349579 LOC107750620,LOC107686638,LOC107687055,LOC107746308,LOC107701458,LOC107561921 non-coding upstream 58868 13990818 ~ 13991384 (-)
LOC122349771 NA non-coding upstream 71020 14002970 ~ 14004205 (-)
LOC122348277 LOC107687055 non-coding upstream 92158 14024108 ~ 14024655 (-)
G52871 NA other downstream 29446 13897496 ~ 13898323 (-)
chd3 chd3,LOC107702058,LOC107738011,LOC107707064,LOC107683578 other downstream 490121 13395839 ~ 13437648 (-)
G52772 LOC107738015,LOC107683576,LOC107597053 other downstream 576148 13348517 ~ 13351621 (-)
zgc:194312 zgc:194312,LOC107683543,LOC107597058,LOC107738022,LOC107675500,LOC107595297,LOC107731916 other downstream 676564 13245271 ~ 13251205 (-)
LOC122347902 LOC107738036,LOC107597071,LOC107683528,LOC107731901,LOC107558414,LOC107679225 other downstream 936548 12968337 ~ 12991221 (-)
LOC122347915 NA other upstream 133065 14065015 ~ 14068500 (-)
G52897 LOC107558424,LOC107731920 other upstream 137163 14069113 ~ 14073699 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other upstream 143593 14075543 ~ 14090441 (-)
G52917 LOC105896813 other upstream 212556 14144506 ~ 14145280 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other upstream 1041753 14973703 ~ 14975168 (-)

Expression


Co-expression Network