G55344


Basic Information

Item Value
gene id G55344
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 22542265 ~ 22542757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU81991
CGCGGCTGATTTGCCTTGGCTACAAGCGTTTGTAATACTTGACAAGACGGCCTAAAACATTAGCTTTCAATCCAACACAGACCTTGGGAGCATTATTAATAAGTACGACACGCAACGTATCGAAATGCACTTTAACGTGACAAAATAATCTTACCTGCTGTAACCCTACGCAGTGTGCTAAATAGCAGCAGGAGAAGCGATGACTTCTCTCCCGCCGCTGCCGCTCCGAGCTCGAGCTCTGACTGTCCGCCGCAACAGCGTCACAGATATCAGGAGCGGGATAAAGTCTGTTACGTCCTTAACTTGGGTTAGAACGCAGCTGACGACATTTTGGATCAAGGTGGGCCCACATCATATGTCTCTAAACATCATATGACAGTTCGCTTTGAGCCAACATGGCTGAGAGAGGGAAagactttaaaggcgatttccGACTCCATTTTATTTATCTCCAGGCAACAAGACAGATTACAAAATGTGTCGCCATGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81991 True 493 lncRNA 0.47 1 22542265 22542757

Neighbor

gene id symbol gene type direction distance location
ptprja LOC107703305,LOC107554646,LOC107722410,LOC107656190,LOC107590988 coding downstream 22896 22495938 ~ 22519369 (-)
slc22a18 slc22a18,LOC107656189,LOC107590987,LOC107554645,LOC107703304 coding downstream 46729 22490611 ~ 22495536 (-)
LOC122347978 LOC107560124,LOC107656186,LOC107722378 coding downstream 105330 22432498 ~ 22436935 (-)
slc8b1 slc8b1,LOC107722394,LOC107703293,LOC107742569 coding downstream 139327 22396037 ~ 22402938 (-)
snx1b snx1b,LOC107703294,LOC107560120,LOC107722395,LOC107656183,LOC107742568 coding downstream 146545 22388506 ~ 22395720 (-)
ccdc96 ccdc96 coding upstream 54246 22597003 ~ 22604274 (-)
grpel1 grpel1,LOC107722418,LOC107590998,LOC107656173,LOC107739410,LOC107556074 coding upstream 66201 22608958 ~ 22611998 (-)
shrprbck1r shrprbck1r,LOC107722400,LOC107656201,LOC107590993,LOC107739381,LOC107556071,LOC107653293 coding upstream 204267 22747024 ~ 22758531 (-)
dync2i1 LOC107556069,LOC107739348,LOC107591041,LOC107683362 coding upstream 237201 22779958 ~ 22791721 (-)
dnajb6b dnajb6b,LOC107684822,LOC107653290,LOC107556066,LOC107724407,LOC107742135,LOC107591005 coding upstream 450452 22993209 ~ 23013443 (-)
G55338 NA non-coding downstream 1367 22487128 ~ 22540898 (-)
G55319 NA non-coding downstream 132439 22409271 ~ 22409826 (-)
G55318 NA non-coding downstream 257417 22282991 ~ 22284848 (-)
G55297 NA non-coding downstream 297609 22244236 ~ 22244656 (-)
G55196 NA non-coding downstream 442980 22097861 ~ 22099285 (-)
G55345 NA non-coding upstream 3275 22546032 ~ 22546525 (-)
G55331 NA non-coding upstream 4198 22546955 ~ 22572779 (-)
G55353 NA non-coding upstream 45520 22588277 ~ 22594541 (-)
G55357 NA non-coding upstream 51863 22594620 ~ 22594830 (-)
G55409 NA non-coding upstream 250276 22793033 ~ 22793251 (-)
otog LOC107722353,LOC107656169,LOC107591037,LOC107703275,LOC107742581,LOC107554595 other downstream 53342 22443798 ~ 22488923 (-)
LOC122347949 LOC107560124,LOC107722378,LOC107656186,LOC107554594,LOC107742573 other downstream 101826 22432400 ~ 22440439 (-)
si:dkey-23n7.10 si:dkey-23n7.10,LOC107560112,LOC107742582,LOC107554633,LOC107722376,LOC107703276 other downstream 436936 22102914 ~ 22105329 (-)
G55165 cd59,LOC107560108,LOC107736732,LOC107677235,LOC107722399,LOC107554602 other downstream 486020 22052796 ~ 22056245 (-)
cebpa cebpa,LOC107722391,LOC107696713,LOC107551484,LOC107733057,LOC107657126,LOC107580367 other downstream 788827 21653321 ~ 21753438 (-)
wdr97 LOC107722359,LOC107591040,LOC107684931 other upstream 226875 22769632 ~ 22779326 (-)
nom1 nom1,LOC107724412,LOC107684778,LOC107653288,LOC107742133 other upstream 508433 23051190 ~ 23058781 (-)
G55732 htr5ab,LOC107684958,LOC107591053,LOC107742155,LOC107659435,LOC107598724 other upstream 1193282 23736039 ~ 23741133 (-)
rrad rrad,LOC107728691,LOC107564552,LOC107725029 other upstream 2878858 25421615 ~ 25423593 (-)
ciao2b fam96b,LOC107681502,LOC107673764 other upstream 2882887 25425644 ~ 25428025 (-)

Expression


Co-expression Network