Gene
RNA
| Item | Value |
|---|---|
| gene id | G27293 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 4905159 ~ 4993021 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU30820 | True | 1225 | lncRNA | 0.29 | 2 | 4905159 | 4993021 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_04798717_04889650 | ARHGEF4 | coding | upstream | 15509 | 4798717 ~ 4889650 (+) |
| CI01000004_04786239_04788953 | NA | coding | upstream | 116198 | 4786239 ~ 4788961 (+) |
| CI01000004_04754556_04784656 | ATR | coding | upstream | 120402 | 4754556 ~ 4784757 (+) |
| CI01000004_04690908_04706755 | ATP1B3A | coding | upstream | 198259 | 4690908 ~ 4706900 (+) |
| CI01000004_04535801_04536013 | NA | coding | upstream | 368650 | 4535258 ~ 4536509 (+) |
| CI01000004_05154049_05203177 | COL11A1B, COL11A1 | coding | downstream | 161028 | 5154049 ~ 5203177 (+) |
| CI01000004_05227614_05231253 | OLFM3, OLFM3A, OLFM3B | coding | downstream | 234593 | 5227614 ~ 5232052 (+) |
| CI01000004_05238552_05246750 | TECRL2B | coding | downstream | 244183 | 5237204 ~ 5247114 (+) |
| CI01000004_05343381_05353920 | NA | coding | downstream | 350360 | 5343381 ~ 5354231 (+) |
| CI01000004_05389431_05393230 | TMEM56 | coding | downstream | 396349 | 5389370 ~ 5394211 (+) |
| G27295 | NA | non-coding | upstream | 4322 | 4895552 ~ 4900837 (+) |
| G27305 | NA | non-coding | upstream | 148932 | 4755730 ~ 4756227 (+) |
| G27278 | NA | non-coding | upstream | 181529 | 4723420 ~ 4723630 (+) |
| G27271 | NA | non-coding | upstream | 209242 | 4694973 ~ 4695917 (+) |
| G27265 | NA | non-coding | upstream | 218237 | 4686708 ~ 4686922 (+) |
| G27383 | NA | non-coding | downstream | 115241 | 5108262 ~ 5126498 (+) |
| G27388 | NA | non-coding | downstream | 140184 | 5133205 ~ 5133577 (+) |
| G27753 | NA | non-coding | downstream | 213827 | 5206848 ~ 5208660 (+) |
| G27757 | NA | non-coding | downstream | 226594 | 5219615 ~ 5220010 (+) |
| G27780 | NA | non-coding | downstream | 255813 | 5248834 ~ 5249065 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | upstream | 1352713 | 3550329 ~ 3553423 (+) |
| G26245 | NA | other | upstream | 1382766 | 3509017 ~ 3522393 (+) |
| CI01000004_02745885_02768971 | NA | other | upstream | 2146221 | 2745885 ~ 2769135 (+) |
| G25992 | NA | other | upstream | 2168391 | 2736536 ~ 2736768 (+) |
| G25882 | NA | other | upstream | 2332110 | 2548075 ~ 2573049 (+) |
| G27805 | NA | other | downstream | 379804 | 5372825 ~ 5373803 (+) |
| G28165 | NA | other | downstream | 739568 | 5732589 ~ 5733001 (+) |
| G28302 | NA | other | downstream | 1477007 | 6470028 ~ 6502087 (+) |
| CI01000004_06571261_06572539 | SEP15 | other | downstream | 1578199 | 6570771 ~ 6572667 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | downstream | 2661751 | 7654234 ~ 7656383 (+) |
