si:ch211-260e23.7 (si:ch211-260e23.7,LOC107736736,LOC107562536,LOC107698628)


Basic Information

Item Value
gene id si:ch211-260e23.7
gene name si:ch211-260e23.7,LOC107736736,LOC107562536,LOC107698628
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 25854780 ~ 25857238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU82984
GTTTCCATTtcctttacattacatttacgcGATGCTCCGACATAAACTAAAGGCTTTATTAAAGCGTGACACGAATTAAAGGAAGCGCGATGCACTGACTCCTCAAACCCAAAGTAACTTCAACGAAAGAAAGAGGCGGTCTTTGAACAGCACGATGAGCCGTCGACTAGAAGATGTAATGGCTCTGTGCTGTAAGATATCAGAGGACGGGAGGATTCAAGCAGCTGTACAGAACTCAGCCAAAGGAGCCGCCGCAGCGGGCGGGGGGGCTTTTTTAGAGGGGCTGCTCGGAGGTCCGCCCGGTATATTTATTGGTGGTGCTTTGGGTGGTGCCGTTGGGTGGTGGATGACTAGTGACAAATTCCTTCCTCTTCATCAAATCATAATGGAGATGCCTCCGCAACAGAAGAGGAAACTGTACTCTGAGGTCATGGCTGTCTTGGGCAATCTGGATTGGGTCGATCTGGCTCAACTCATTTTTTTAGTGACGGGTAATTCCTCTCTACAGATGCGAGTCCTTTCTACTTTAATCTCTTTTGCCACAAAAGAGCTTGGAGCCAAAGTGGAGTATGGGCAAAAATAGCATGTTCATTTCACCTTCTTAGTCTAAGGCAAGTTTGACTAGGGCCTATCTAAAGAgcttttttattgtagtttctgaaaaatgtgtttttatttttaattttcagctcCTTTTCCAACACTTCAGTTTCAATTCAGCTGACCAGAGCGAGATTTTCACTGTAAACCTCGATGCTTAACAtatgtaaattttaaaaatatgcaaaaaaaaacaaacaaatgaaacctAAATCAATCCTTTAGAAAAACACGCGTGATCAAGATCAGCTCGATGGATAGTTAAAGGGACAGCGCACTGCAAAAAGTGTACAATAGcttttgaattgaaaaaaagcgttgtttgttcatattcaggtaaattttaaaacataggAGAGGATATAGTTAGGAAATGATGTCCTGAATCAGaatcattgtgtttttatggcTGGAATGCAGTACACAGATTTGAAAATATTAGATATCATTCACTTAATAGCCGCCGAAGAAAACTGACCATTACACACTACAAGGCTTTAAGTCGTTCCGATCACAACAAACTCAAAATATCGAATGTGTTTGATATTCTCCAACCGGATCGTGACATGATTAACGGCGTAATTTCATAACATGCAGGAATAATCCACTAACATGTGCACcgcatgctatttttttatgtttacctGGTACCTTATTGTCAGGGTGAGGTTTAAAGAGAAGGAGCGCTCGACGAGAATATAAAGTtaacgagatcggacaaacagaagtGAATCACAcagggaataaatacacaaagcagttgactaaattaacaagacacaggtgaagacaatgatacaattaacaggaagggaaggtagggcacacagagcacctggtacaagacaaaaaacaaccaGTGTGTGACACTTAGATGCACTGCTGTTTAAAACTTTAGGATTGGTAAGGTTTTAACTGTATCCCCTTTTCATAAAAGTctgtaatgctgtatttattgGATCAAAAAGAACGTATTGTGAACTATTATGAACATTTTtgtatacaatttaaaatgccatttgtttatttagatgtcatttatttaagcagctattcctccagtcttcagtgtcacatgattcttaaaaatatatatatatttttatcaaccATTAAAACAGTTGCTTAATAGTTTTGCGGGAAAACATGATGATCAATGTAATGCACCAtcgctga
>XM_043245401.1
CAACAGGTGGGCCTATCGGGAAAAGTAGCCCACAGCAGAGACCGTTTCCATTtcctttacattacatttacgcGATGCTCCGACATAAACTAAAGGCTTTATTAAAGCGTGACACGAATTAAAGGAAGCGCGATGCACTGACTCCTCAAACCCAAAGTAACTTCAACGAAAGAAAGAGGCGGTCTTTGAACAGCACGATGAGCCGTCGACTAGAAGATGTAATGGCTCTGTGCTGTAAGATATCAGAGGACGGGAGGATTCAAGCAGCTGTACAGAACTCAGCCAAAGGAGCCGCCGCAGCGGGCGGGGGGGCTTTTTTAGAGGGGCTGCTCGGAGGTCCGCCCGGTATATTTATTGGTGGTGCTTTGGGTGGTGCCGTTGGGTGGTGGATGACTAGTGACAAATTCCTTCCTCTTCATCAAATCATAATGGAGATGCCTCCGCAACAGAAGAGGAAACTGTACTCTGAGGTCATGGCTGTCTTGGGCAATCTGGATTGGGTCGATCTGGCTCAACTCATTTTTTTAGTGACGGGTAATTCCTCTCTACAGATGCGAGTCCTTTCTACTTTAATCTCTTTTGCCACAAAAGAGCTTGGAGCCAAAGTGGAGTATGGGCAAAAATAGCATGTTCATTTCACCTTCTTAGTCTAAGGCAAGTTTGACTAGGGCCTATCTAAAGAgcttttttattgtagtttctgaaaaatgtgtttttatttttaattttcagctcCTTTTCCAACACTTCAGTTTCAATTCAGCTGACCAGAGCGAGATTTTCACTGTAAACCTCGATGCTTAACAtatgtaaattttaaaaatatgcaaaaaaaaacaaacaaatgaaacctAAATCAATCCTTTAGAAAAACACGCGTGATCAAGATCAGCTCGATGGATAGTTAAAGGGACAGCGCACTGCAAAAAGTGTACAATAGcttttgaattgaaaaaaagcgttgtttgttcatattcaggtaaattttaaaacataggAGAGGATATAGTTAGGAAATGATGTCCTGAATCAGaatcattgtgtttttatggcTGGAATGCAGTACACAGATTTGAAAATATTAGATATCATTCACTTAATAGCCGCCGAAGAAAACTGACCATTACACACTACAAGGCTTTAAGTCGTTCCGATCACAACAAACTCAAAATATCGAATGTGTTTGATATTCTCCAACCGGATCGTGACATGATTAACGGCGTAATTTCATAACATGCAGGAATAATCCACTAACATGTGCACcgcatgctatttttttatgtttacctGGTACCTTATTGTCAGGGTGAGGTTTAAAGAGAAGGAGCGCTCGACGAGAATATAAAGTtaacgagatcggacaaacagaagtGAATCACAcagggaataaatacacaaagcagttgactaaattaacaagacacaggtgaagacaatgatacaattaacaggaagggaaggtagggcacacagagcacctggtacaagacaaaaaacaaccaGTGTGTGACACTTAGATGCACTGCTGTTTAAAACTTTAGGATTGGTAAGGTTTTAACTGTATCCCCTTTTCATAAAAGTctgtaatgctgtatttattgGATCAAAAAGAACGTATTGTGAACTATTATGAACATTTTtgtatacaatttaaaatgccatttgtttatttagatgtcatttatttaagcagctattcctccagtcttcagtgtcacatgattcttaaaaatatatatatatttttatcaaccATTAAAACAGTTGCTTAATAGTTTTGCGGGAAAACATGATGATCAATGTAATGCACCAtcgctgaataaaagcatcagtatctttta

Function

symbol description
si:ch211-260e23.7 Predicted to be located in cytosol; endoplasmic reticulum; and mitochondrial membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 43 and neurodegeneration with brain iron accumulation 4. Orthologous to human C19orf12 (chromosome 19 open reading frame 12).

NR:

description
PREDICTED: protein C19orf12 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82984 False 1776 TUCP 0.39 3 25854802 25857195
XM_043245401.1 True 1841 mRNA 0.39 3 25854780 25857238

Neighbor

gene id symbol gene type direction distance location
shcbp1 shcbp1,LOC107696664,LOC107698633,LOC107720160 coding downstream 8332 25830454 ~ 25846448 (-)
vstm2b vstm2b,zgc:194678,LOC107725041,LOC107681514,LOC107711504,LOC107690221 coding downstream 388233 25452918 ~ 25466547 (-)
cdh16 NA coding downstream 434842 25395474 ~ 25419938 (-)
nae1 nae1,LOC107681501,LOC107564551,LOC107562218,LOC107728704,LOC107673769 coding downstream 489836 25359026 ~ 25364944 (-)
dync1li2 dync1li2,LOC107562216,LOC106561980 coding downstream 525100 25314153 ~ 25329680 (-)
zgc:101715 LOC107746490,LOC107698629,LOC107562537 coding upstream 1222 25858460 ~ 25859712 (-)
si:ch211-260e23.8 si:ch211-260e23.8,LOC107696619,LOC107556239,LOC107698627,LOC107726085,LOC107746489,LOC107562535 coding upstream 2743 25859981 ~ 25861598 (-)
zgc:162297 zgc:162297,LOC107696663,LOC107556242,LOC107746488,LOC107726063,LOC107698624,LOC108413343 coding upstream 7765 25865003 ~ 25869108 (-)
tshz3b tshz3b,tshz3,LOC107696607,LOC107570485,LOC107556246,LOC108429148 coding upstream 625786 26483024 ~ 26519993 (-)
si:ch211-186j3.6 si:ch211-186j3.6,LOC107696606,LOC108259100,LOC108442966,LOC107741884,LOC106562040,LOC105022727 coding upstream 911723 26768961 ~ 26957250 (-)
G55984 NA non-coding downstream 45551 25808439 ~ 25809229 (-)
G55969 NA non-coding downstream 183909 25670447 ~ 25670871 (-)
G55966 uqcrfs1,LOC107565776,LOC107741896,LOC103039511,LOC108412826,LOC103466211,LOC106562006 non-coding downstream 246183 25606054 ~ 25608597 (-)
G55959 NA non-coding downstream 299389 25555135 ~ 25555391 (-)
LOC122349787 NA non-coding downstream 433760 25419944 ~ 25421020 (-)
G56053 znf536,LOC107696660,LOC107556245,LOC107741882,LOC107562530 non-coding upstream 515861 26373099 ~ 26374661 (-)
G56082 NA non-coding upstream 673573 26530811 ~ 26531734 (-)
G56083 NA non-coding upstream 674903 26532141 ~ 26532837 (-)
LOC122349585 NA non-coding upstream 814377 26671615 ~ 26703413 (-)
G56134 NA non-coding upstream 871667 26728905 ~ 26729125 (-)
ciao2b fam96b,LOC107681502,LOC107673764 other downstream 426755 25425644 ~ 25428025 (-)
rrad rrad,LOC107728691,LOC107564552,LOC107725029 other downstream 431187 25421615 ~ 25423593 (-)
G55732 htr5ab,LOC107684958,LOC107591053,LOC107742155,LOC107659435,LOC107598724 other downstream 2113647 23736039 ~ 23741133 (-)
nom1 nom1,LOC107724412,LOC107684778,LOC107653288,LOC107742133 other downstream 2795999 23051190 ~ 23058781 (-)
wdr97 LOC107722359,LOC107591040,LOC107684931 other downstream 3075454 22769632 ~ 22779326 (-)
hsd17b12b hsd17b12b,dh12b,LOC107701268,LOC107757588,LOC107600455,LOC107695363,LOC107730274 other upstream 1924420 27781658 ~ 27825021 (-)
crtc3 LOC107701275,LOC107695354,LOC107757665,LOC107596420 other upstream 2058259 27915497 ~ 27950958 (-)
tp53bp1 tp53bp1,LOC107600464,LOC107596411,LOC107757765 other upstream 2164471 28021709 ~ 28041165 (-)
ppip5k1a ppip5k1a,LOC107695346,LOC107701280,LOC107596413,LOC107730229,LOC107757809 other upstream 2212829 28070067 ~ 28096957 (-)
katnb1 katnb1,LOC107707908,LOC107711579 other upstream 2434898 28292136 ~ 28301811 (-)

Expression


Co-expression Network