tshz3b (tshz3b,tshz3,LOC107696607,LOC107570485,LOC107556246,LOC108429148)


Basic Information

Item Value
gene id tshz3b
gene name tshz3b,tshz3,LOC107696607,LOC107570485,LOC107556246,LOC108429148
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 26483024 ~ 26519993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244595.1
ACCTACACTCTAAACATCTGAGGGGGAGTTTTTACCTGTTTCAAAAGTCTGAGAGACAGCCGTATCCTCATTTCTCCAGTTTATTACTCTGtgcttattttacttttacgGACAACGCAACTTTCAGTAGACCGAGTCAAATTAAATTCGCGGTTCTCAAGAAACTTTAATGATATAATCAAAGCAGCCTCTCTAGCGGTCCCATGCTTGTGCACTGAGGCAATCGGTGAAATATGGCCGTACAAAATAaacaggatattttttttttccaagcagtAGTATAAAGCACATAATTCACGTCAATGCAAAGCGAAATGCATTCGCCTCGCTCAGACTTCACAACCTTCAAAAAGTccgaaatattataaaatgaattaacgGCGTTAATGATAACAAAGTAAAGAGCAAAAACCAACTTGTTCGAGTTACTTTAAGAAAACCCTTCAgaattgattttacatttttaaacgaTTACGCGCCGCCGTCGCTCGCCAGTaagttattaatattagtatcgGCAATAATGTAGGCTAACTTGCGAGTAACAAGAGAGAAGCATTAATCCACtaaagtttgaaaataaatcGTCAGGCACGTACTCGATGCAGCTTCCCGACGCGCCATTCGGCTCCAGCGATTTGATAATGcgttattatatttctttaagGATATAACGTCCCCCCACTAAACACTCTAATCTTGCTTTATCGGTCGTTTAAAGAAGAGGAGAAGCTGCCCGTAGTTAAAGCGACTCCGCgcggcgtgtgtgtgtctgtgtgtgtacgtgCGCGCGCgcgagcatgtgtgtgtgtgtgtgacactgaTGGATGCGCCAATGGTTAGACGGACAGATGCTTGGGCGGATCTAACGGCATGCACACACGAGTGAGTGAGATCGGGCAAAAACATCCCGGATCAGCGAAAGACCGCTCTTCCCTTTCAATCTGCCCATGTGAGCTCGGCGCGCGGACACCGAAGCGATCCCGGACATTCTGGTTTTATTGAACGCCGCGGCTCCCGGTCGCCCCCCCCCCTTTCCGAGGGCTCGACGCGGTTCCCCTTCGCGGTCAGGCGTGAGAGGAGACGGCACGGTCGCGAGGCGAAGACGCGGACTTCAGCGGAAGAGGCAGTGTCTTGACAACTCACCCTCAGCTAGTAAACAGAGAGGACACAGTTCCTATCTCCCCCCTCTCATCCAATCCGGACAACTTCGCCCTTTTCTCCAGTGCGAGTTCACACTTTGCGTTTGcaaaaacgaaaaagaaaaacctcTCTCTtcgtaacactttttttatgtatatatatatatgtgtgtgtctagtaGTAGGTTCCGTGATGATGGACATATCTGGAAAATGTTGATCTTACCGTCTTAAAAAGTCCATTCTGTGAAGAAAGCGTTTGATAGCGGATTTTCGAAAGTGACATTACTGGAGAGCGCGAGAGGAAGACGCGTCTGCTTCGCCCGTCgctgttttttaaatacctGCTACGAGCCCCACAAAGAAGGCTGAAAAAAGTGCTATTAGCGGCCAAGAAAGTGTTTGGCAGTAGCTCGGTGATCCATGCTctcgcagcagcagcagctgaggCGCAGCCCGAGTCCATCCCCTCCTTCTGATGTGCGTTATTACGAGCAGGAATACCCAATCAAACACCTATCGCATCGATTCTCTCGGCGGATTCCCGACGCGCGCGGACAAAATAAGCAAACGAGGCAGCGCGCGGGCGACAAGTCCGTCCATCTCCTCCTTCGAGCTTTTTGTCTCTACCCCGGTTTGTTTATCATAAAAGAGATGGACGTTTGAAAGGCGGCGGGCACTTGGAGTCTTTGGGATTTTCACAGAAAGCTATCGGCGACAGCTACgcgatttttttctttttttttttttttttttggcttttccAATTGTGTGCGATTACTCGGCGCGGATTCCTCATGGATAACACGTTTATTCAAGCGACCGACTTGCCTGTTGCAGCTTCCAGCGCGGAGTGAGTGAGAATCGCACTGAGGCACGAGCGGTTTTCCTCCCCACCGTAACGGCTCGACTCTCCGTCACATCCAAAAAGACGCGCGgggggaaagagaaagaggaaagaggGGGAAAATCCCGCTTCGTCTTCATCCTCCTCAGATCTTGCCGTCTGATTTTTGGGTTTGAAAACTGCCGATACATGTCAGGCGTGTGAAAGCGCCCCAGGTGCCGTGTATCAGAGCAGAAGCGGAGCAGCTCTCGGGATCTCAGGggctcctgaaaaaaaaaaaaaaaaaaaaaaccctgaaagaGAAACATGCCGCGGAGGAAACAGCAAGCGCCCCGGCGCTCGGCAGCATATGTGCCAGAGGAGCTAAAGGAGGCTGCCTTACTGGATGAGGATGTTGAAGGAGAGGATTCAGCTGTGGAGGAGGAACCTGCCATGAAGTATGTGTGCCAGGACAAGGACTTACTCCTTAAAGACAGGCAAGGCTTTCATGACTCTCCGCCGGCGGATTTCTCCAGCCATGAGATGGACAGCGAGTCACACCTGAGTGAGTCCAGTGACCGCATGTCAGACTTTGAGAGTGCCTCAGTGAAGAACGAGGAAGATATTTCAGCTAAGGAGCCCCTCACATCTCTTTCTTCTACTTCATCAGTGATGATGACAACAACAGCCACGCCAAGCAGTGAGGAGGTGACACAATTGGGCCCAGACAGCCTGGAGCAGATGAAAGCTATCTACACTAGCTTCCTGACCAACTCCTACTGGTCATCGCTGAACTTGAATATGTCTCAGCAAACAGCAGAAAAACCCCCACGTAGTCACAGTAGTAGCAGCAGCAGTAGTAGCAGCAGCAGTAGCTGTGGAAGTGGCGGTTACGACTGGCACCAGACAGCAGTGGCTAAGACCTTGCAGAATGTTTCACAAAACCAGAGTAGACTGCTGCACCCAGCATCCGAGCCAAACCTCTTCAGTACTGTGCAGCTTTATCGGCAGAGCACCAAGCTCTATGGTTCAATCTTCACTGGTGCAAGCAAGTTTCGCTGCAAAGACTGCAGTGCTGCCTATGACACTTTGGTCGAGCTCACCGTGCACATGAATGAGACGGGCCACTACCGAGATGATAACCATGAGACAGACAGTGAAGGTGCCAAACGCTGGTCGAAGCCTCGCAAGCGTTCACTACTGGAGATGGAAGGAAAAGAGGATGCCCAGAAAGTTCTTAAGTGCATGTACTGTGGCCATTCCTTCGAGTCACTGCAGGACCTTAGTGTTCACATGATCAAGACAAAACACTACCAGAAAGTGCCTCTTAAGGAACCAGTAACTCCTGTGGCAGCCAAGATTATCTCCTCAGCTCGTAAAAGAGCCCCCATTGAGCTAGAACTCCCCAGCTCACCAGATTCCAATGGTGGCACCCCAAAGCCTTCTTTGTCTGACCCCAACGACCTTCTTCAAAAGACCCCTAATCCCTACATCACACCCAACAATCGGTATGGCCACCAGAATGGTGCTAGTTATGCATGGCAGTTTGAGTCACGGAAATCCCAGATCCTAAAGTGCATGGAGTGTGGAAGTTCCCATGACACACTTCAGGAGCTGACTGCCCATATGATGGTCACAGGACACTTCATCAAGGTCACTAACTCCGCCATCAAGAAAGGCAAACCTATCATGGAGTCGATGTCCACGACGACTCCTAACACCATACCTACTAATGAAGACAAGGTACAGTCAGTGCCGCTGGCTGCCACTGCATTTTCCCCACCGCCACCAGCACCTCCTCCCCCTAGTATCTCCCCTGCCATCACACCAATGGAGATTAAAAAGGAGGAGAAGGAAGTAGAGTGTACCAAGGAGACAAATAATGGCAAAGACAAAAAGGCAACAGACAGTGAGACCGACGAGAAGTTTGAAGTCTCATCCAAATATCCATATTTGACAGAGGAGGATCTTGAAGAAAGCCCTAAGGGGGGGTTTGACATTCTGAAGTCTCTCGAGAATACAGTAACATCTGCCATCAACAAAGCACAGAATGGCACACCCAGCTGGGGAGGCTACCCCAGTATTCATGCTGCCTACCAGCTTCCCAACATCATGAAACTCTCCCTGCGCAACTCAGGGAAAAGTTCTCCTCTGAAGTACATGTTTTCTGGAGAAGAGATCATGTCTCCTACCAAAAGCCAACCTCTAATTTCTCCAGCTAGTTGCCAAACATCCCCTTTGCCCAAAAACAACTTCCATGCCATGGAAGAGCTGGTCAAAAAAGTCACAGAAAAAGTGGCCAAAGTAGAGGAGAAGATGAGGGATCCCGGCGCTAGATCTTCCCCACTTAGACGGACCACACCCTCCCCTTGCAGTAGCGATGCAGGGGAATCTGCCAGAGGGGAGTCCCACAAGGAAAGAAGAGGAGCCAAAACCCCTGAGACTAATGGGGGCGGAAACACTCATAAAGACTCAAATGGTGATGCTCTTACAAAAGAGTCTCTGGAGAATGGTACTGACCATGTTGTCAAAGCCCCTGTGTCTACCTTATGCAGCAGCACTGCTATTATAACTGACCATCCTCCAGAGCAGCCGTTTGTCAACCCTTTAAGTGCGCTTCAGTCTGTCATGAATGTTCACCTAGGAAAAGCTGCCAAACCTGCCCTGCCGTCCCTTGACCCCATGAGCATGCTCTTCAAGATGAGCAACAGCCTGGCGGAGAAGGCAGCTGTAGCTGCCTCCACTCCATCTCAGACCAAAAAAACCAACGAGCATCTAGACCGCTACTTCTACCACATCAACAATGACCAGCCTATTGACCTGACCAAAGGCAAGAGCGATAAGAGCAACTCCCTAGGATCTGCTGCCCtgtcctcctccacctccactcCCACCTCGATTTCACCATCATCGACCATCACCATGGCAAAAGCCTCATCTGCTGTGGCTTCCTTCATGTCCAACTCACCTCTGCGCGAAAATGCCCTGTCCGACATCTCCGATATGCTACGTAACCTCACAGAAAGCCATGCATCCAAGTCCTCCACACCAACGAGTCTTTCAGAGCGCTCAGATATAGACGGATCGACGGCAGAGGAAGCAGAGGAGATCTCTCCGGCTCAGAAACGAAAGGGGCGGCAGTCCAACTGGAATCCTCAGCATCTACTTATCTTGCAGGCTCAATTTGCCTCCAGTTTGCGACAAACGGGTGACGGCAAGTACATTATGTCGGACCTGAGTCCACAGGAGCGCATGCATATTTCCCGCTTCACTGGCCTCTCAATGACCACCATCAGCCACTGGCTGGCCAACGTCAAATACCAGCTGAGGCGGACAGGTGGCACAAAGTTCTTGAAAAATCTAGACTCTGGCCACCCTGTCTTCTTCTGCAGTGACTGTGCATCACAGATCCGTTCCCCCTCTACCTATGTCAGCCATCTTGAGTCACATCTGGGCTTCCGGCTCAGGGACCTGGCCAAGTTGTCTGGAGAGCATCTCGTTAGCCAGATCTCACGCCATAGCAAGGGGCTTTCTGAGAAACTGCTTTCAACGCAAGCGCATTCTTTGGCCCATTCAATCCCCAACCCCAGTCCTCACTCACTTTCCCCCTCCCCTTCCCCAGATGAGGAGGCAAATGGCACCTCATATCAGTGTAAACTGTGTAACCGGACTTTTGCCAGCAAGCACGCTGTCAAGCTCCATCTGAGTAAGACTCATGGTAAATCCCCCGAGGACCATCTTATGTATGTTAGTGAACTTGAGAAACCTTAGCGATGGCCAAGGACAAAAACTGTCTCTCATCTCTTTATTTCCTGTCCTTTTTCAAGCCTTCTGACTAACATTtcttaaggaaaaaaatataaaagaactgAAAGTAATTAACGAAGAACTAACTGCACATAGATGCCAGAAAACTACTGTTTAGTTTTGGCACATCATTTGGAGTTTTCCTCTGGGGAACACTCATTTGGCCCTAGAGACattaattttctgcatttttagttCACAATggaaaacagagaaaatgatgacaaatgaTTTTCTAACTGTGCAGTGCTGAGTGAAGAGGTCACTGGTAAAATATGaaggtaaataaaaaagacttaaaaatgAAGTTGTATGTATTTGAAAGTTGtgtaaattgaatttttttggcATCCTTGAGATGCAGTAAGCTGCATGCATTAATGAAATGGTTTAGTTCAATATTTGATAACTAAATCTGGGCTTTTCTTTATCTCTCGCTTTAAttctctcttattttttttttccttttttccctctttctttttttttaatgtgacctAAGTATGCTGGTGTCAGCAGAAAAATTTAACCCTCTGAGTACGCCTAAATACTTCTATATTTACAACCCCcccaaaactaaacaaaaaaaaaatatatgtataaaaagagagaaattaaGAGATTGGAAATCACCGAGTTTATATGTATTTGAGTGGGTAAATTCAAGGGTATTTTGAAAATCCACTAAAACTCACCTTTTCTGATAGATCACCTCTTACACAGCTTGCAGTGCAGAAATATATGTGAATCCAAAATAGCAGTTTTTTAGTTTGCTCAAATCAGGGGCCTTTATGAATTCAGGTCagtgtaaaaatgtgtacataaaaacataaactaaTTTCTGTCtaaattatgcatcattttatattttttaatttaagatgaGTATGACTATCTACTGGTGCACAATATATGAAGACATTAATGAAATTGTTTTGCACAatagttttataaatatgttatttaatcAGAAGATatgaaaatgagaagaaaaaaaaaatcaccctaAAGTTTTATTTCCACCTCGTGCTCAAAGGGTTAAAACTTCTTGTACAAGACAGTACTTGTTCCATCATTTCACTTAAATGGTTGTATAAAAAGATGCTACTTTATAATGTAAGGAGGAATTCCACGatgtaacctttttatttataaacactcTTGGTTGTTGTTTCATATTGTAGAATGCCTTCTTGATTGgtatcttttattttgttgttctgtCTAATTATTCCTCCATAAAACCACACTGCAGCTTCATCATTTTTGGGGATATGAAAGGTAACCATGGTTACCTTACCTCCAATTGACAGTTCTGCTACGTTTTGGCAGTTAATTTACTGAAGTAACTGACAGCTGCCAGTGAATGGAAATCTTATGTGTAAAATATTGGCATGTTAACAGCACAGGCACTGTTATGCATTCTGTGccgtgtttctttttttgttgttgttgacaaTGAAGCACTCATTATATGACTTCATATAACCTTTTTTCTACTGCAgcattaaattgaaattgttttggttttttgcaATAA

Function

symbol description
tshz3b Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including brain; olfactory system; pharyngeal arch 3-7; posterior neural keel; and posterior neural tube. Orthologous to human TSHZ3 (teashirt zinc finger homeobox 3).
tshz3 Enables chromatin binding activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleoplasm and plasma membrane.

NR:

description
teashirt homolog 3

GO: NA

KEGG:

id description
K09236 TSHZ; teashirt

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244595.1 True 7315 mRNA 0.46 3 26483024 26519993

Neighbor

gene id symbol gene type direction distance location
zgc:162297 zgc:162297,LOC107696663,LOC107556242,LOC107746488,LOC107726063,LOC107698624,LOC108413343 coding downstream 613916 25865003 ~ 25869108 (-)
si:ch211-260e23.8 si:ch211-260e23.8,LOC107696619,LOC107556239,LOC107698627,LOC107726085,LOC107746489,LOC107562535 coding downstream 621426 25859981 ~ 25861598 (-)
zgc:101715 LOC107746490,LOC107698629,LOC107562537 coding downstream 623312 25858460 ~ 25859712 (-)
shcbp1 shcbp1,LOC107696664,LOC107698633,LOC107720160 coding downstream 636576 25830454 ~ 25846448 (-)
vstm2b vstm2b,zgc:194678,LOC107725041,LOC107681514,LOC107711504,LOC107690221 coding downstream 1016477 25452918 ~ 25466547 (-)
si:ch211-186j3.6 si:ch211-186j3.6,LOC107696606,LOC108259100,LOC108442966,LOC107741884,LOC106562040,LOC105022727 coding upstream 248968 26768961 ~ 26957250 (-)
mtss1lb mtss1l,LOC107696654 coding upstream 510038 27030031 ~ 27080255 (-)
cpeb1b cpeb1b,cpeb1,LOC107698230,LOC107730276,LOC107696653 coding upstream 577296 27097289 ~ 27103678 (-)
rbpms2b rbpms2b,rbpms2,LOC107596408,LOC107696651,LOC107730279,LOC108438535,LOC107698225,LOC108259650 coding upstream 585523 27105516 ~ 27115169 (-)
sin3ab sin3ab,LOC107707868,LOC107696650,LOC107730266,LOC107698228,LOC107562523 coding upstream 623343 27143336 ~ 27165438 (-)
G56053 znf536,LOC107696660,LOC107556245,LOC107741882,LOC107562530 non-coding downstream 108363 26373099 ~ 26374661 (-)
G55984 NA non-coding downstream 673795 25808439 ~ 25809229 (-)
G55969 NA non-coding downstream 812153 25670447 ~ 25670871 (-)
G55966 uqcrfs1,LOC107565776,LOC107741896,LOC103039511,LOC108412826,LOC103466211,LOC106562006 non-coding downstream 874427 25606054 ~ 25608597 (-)
G55959 NA non-coding downstream 927633 25555135 ~ 25555391 (-)
G56082 NA non-coding upstream 10818 26530811 ~ 26531734 (-)
G56083 NA non-coding upstream 12148 26532141 ~ 26532837 (-)
LOC122349585 NA non-coding upstream 151622 26671615 ~ 26703413 (-)
G56134 NA non-coding upstream 208912 26728905 ~ 26729125 (-)
G56153 NA non-coding upstream 371307 26891300 ~ 26893587 (-)
si:ch211-260e23.7 si:ch211-260e23.7,LOC107736736,LOC107562536,LOC107698628 other downstream 625786 25854780 ~ 25857238 (-)
ciao2b fam96b,LOC107681502,LOC107673764 other downstream 1054999 25425644 ~ 25428025 (-)
rrad rrad,LOC107728691,LOC107564552,LOC107725029 other downstream 1059431 25421615 ~ 25423593 (-)
G55732 htr5ab,LOC107684958,LOC107591053,LOC107742155,LOC107659435,LOC107598724 other downstream 2741891 23736039 ~ 23741133 (-)
nom1 nom1,LOC107724412,LOC107684778,LOC107653288,LOC107742133 other downstream 3424243 23051190 ~ 23058781 (-)
hsd17b12b hsd17b12b,dh12b,LOC107701268,LOC107757588,LOC107600455,LOC107695363,LOC107730274 other upstream 1261665 27781658 ~ 27825021 (-)
crtc3 LOC107701275,LOC107695354,LOC107757665,LOC107596420 other upstream 1395504 27915497 ~ 27950958 (-)
tp53bp1 tp53bp1,LOC107600464,LOC107596411,LOC107757765 other upstream 1501716 28021709 ~ 28041165 (-)
ppip5k1a ppip5k1a,LOC107695346,LOC107701280,LOC107596413,LOC107730229,LOC107757809 other upstream 1550074 28070067 ~ 28096957 (-)
katnb1 katnb1,LOC107707908,LOC107711579 other upstream 1772143 28292136 ~ 28301811 (-)

Expression


Co-expression Network