rbpms2b (rbpms2b,rbpms2,LOC107596408,LOC107696651,LOC107730279,LOC108438535,LOC107698225,LOC108259650)


Basic Information

Item Value
gene id rbpms2b
gene name rbpms2b,rbpms2,LOC107596408,LOC107696651,LOC107730279,LOC108438535,LOC107698225,LOC108259650
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 27105516 ~ 27115169 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245168.1
GTTCCTCTTGGCTggtttttctgtgtttctgtagTTCTACTTTGCAGTCTGCGCTGTGTGAGAGGTTTAAAATGGCTATATGAAGTTCTGCTTGCGCCACCAGAAAAGTGGGTCTCAAAAGCTGTTTGTGCTTGATGTTGATACGAGACGTCTCCAATAATAAAAGGAGCCGTTCCAATTGGTCCGTACTTTCCCATGAAGGCGATGATTCACTAATGGAGGGGTTGGCTTATCCACCAGCTGCAACGCCGCTCTCGAGCCTGCCCCATCTCACTTGATGACCTAATTGGCGAGCAGGTCAACTATGGAACAGGTTTTATCCATGAGCTCCGCTTTCTTtgaaatttaacatttaaaacgaGGTAAATGTGAGGTGGCACCgccgtttctctttttttctctctctcccccaccaccaccacgCACCGCACTTGTCTTCACCGAGTCACCTTCGCGTCTTCGGTTCACCTGGCACTTCTGACACGACCTCAGCGTCCCGCACGAGTTCTGCCGAGTCCCGCACGGATCGCCTTCAGCATCCAGTCGCACTTCAGGACGCGGAAAACACGAAACTTCTGGGTGTCTCAAGTTTACGCACAAGATGAGTATCAAGTCTGACTCCGAGCCAAACAACAACGTGTCCATTGAAGAGGAGGTACGAACTCTATTTGTCAGTGGGCTGCCGACGGATATCAAACCTCGTGAGCTGTATCTGCTGTTTCGACCATTTAAGgGTTATGAGGGTTCACTTATCAAGTTAACATCAAAGCAGCCTGTTGGGTTTGTAACCTTTGATAGTCGTTCCGGCGCTGAAGCggcaaaaaatgcattaaacGGGGTTCGATTTGACCCTGAAAACCCGCAGACCCTCCGGTTAGAGTTTGCTAAGGCCAACACGAAGATGGCAAAGAGTAAGCTGATGGGCACTCCGAATCCCACAAATATCCACCCAGCTCTAGGAGCGCACTTCATAGCACGGGACCCATATGACTTGACAGGGGCAGCTCTGATCCCAGCGTCTCCAGAGGCCTGGTCTCCTTACCCTCTCTACACCCCGGAGCTCAGCCCTGGACTGCCCCACACGGCTTTCACCTACCCAGCAGCGGCCGCCGCAGCAGCAGCTGCACTTCATGCTCAGaTGCGCTGGTATCCTTCCACTTCAGACTCATCCCAGCCTGGATGGAAATCACGGCAGTTCTGTTAAAACATGgtttcttgaAATGGCGTCTTCCAGTTCCTGTTTAAAATCAGTCCAGTTCATTTGaactttttggtttttggatGTAGTAAATCCTTCGGAACTGGGCTGTGAGAGAAAATTTGAGTTTGCATTGAAATCATTGCCAACAGCACAAAAATATGAGACGTATAGATGGTACAGTACCCCTTAGCAGTTCTTAATGGATGCTCCCCCTCCATTCTTGTATTGAAGAATTTAAGACTAAATTCTCATTCATTAAAGATTTGCTCTGGGTCTAAGTAAAATGAGACAATCAACTGAAGCTGACATTGAGCATGTTAGTTTTGGCATGAAGCGTAACTCTGTGCGTCATTGTAGTATGTTTGTTGCTTCCATGACCGGTGTAACCTTGTCCAgtttgtcttgtgtttagtAGCTTGGTCATTGAAGTTGCTTGTACAAAACTGTGGCCAACTTATTTTTGGGTAACGTGATGTCCAGACAGCCAGATGGTTTTCCCCCCTGCTAGTTTCCACTGTAACACATCACAGAGGGCCTGATGACTTCATAAAATGAGACGACCTCGATCTAGAGTGTGTGACTGGGGAGAGTTTGTGCAATTGAAATAAgtaatttgtataaattattgATAACTCTTTCTGTGttgacatttgtttttgtatctATGTCCTTAGCAGTTTCAGAGGTtaagttgtaattttttttttggtttgtttttctttcgtttttgACTGTGTCAGTGTGGCACAACTAACAGTATATGGACAGCAAGTTTGCTGCTAACATGAAATTGCTGTTTCAAGTTAATACTCTGAATATAAAGATATGCTACAATGGTGCATGATTTTAATGGGTGTAGTCATGGTTAATTCAGACatctgaaatgtatttgtttaaaaaaaaaaaagtgtttggtgTACAAAAATACTACTGTATGATATAGTATTAAAATgggaatgcattaaaa

Function

symbol description
rbpms2b Enables mRNA binding activity. Acts upstream of or within female sex differentiation; neuron projection morphogenesis; and regulation of retinal ganglion cell axon guidance. Predicted to be located in cytoplasm. Is expressed in several structures, including cardiovascular system; gonad; optic vesicle; retina; and ventral mesoderm. Orthologous to human RBPMS2 (RNA binding protein, mRNA processing factor 2).
rbpms2 Enables mRNA binding activity and protein homodimerization activity. Involved in negative regulation of smooth muscle cell differentiation. Located in cytoplasm.

NR:

description
RNA binding protein, mRNA processing factor 2b

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25091 RBPMS; RNA-binding protein with multiple splicing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245168.1 True 2168 mRNA 0.45 9 27105516 27115169

Neighbor

gene id symbol gene type direction distance location
cpeb1b cpeb1b,cpeb1,LOC107698230,LOC107730276,LOC107696653 coding downstream 1838 27097289 ~ 27103678 (-)
mtss1lb mtss1l,LOC107696654 coding downstream 25261 27030031 ~ 27080255 (-)
si:ch211-186j3.6 si:ch211-186j3.6,LOC107696606,LOC108259100,LOC108442966,LOC107741884,LOC106562040,LOC105022727 coding downstream 148266 26768961 ~ 26957250 (-)
tshz3b tshz3b,tshz3,LOC107696607,LOC107570485,LOC107556246,LOC108429148 coding downstream 585523 26483024 ~ 26519993 (-)
zgc:162297 zgc:162297,LOC107696663,LOC107556242,LOC107746488,LOC107726063,LOC107698624,LOC108413343 coding downstream 1236408 25865003 ~ 25869108 (-)
sin3ab sin3ab,LOC107707868,LOC107696650,LOC107730266,LOC107698228,LOC107562523 coding upstream 28167 27143336 ~ 27165438 (-)
cdkn1ca cdkn1ca,LOC107730273,LOC107579849,LOC107696647,LOC107707862 coding upstream 139252 27254421 ~ 27255883 (-)
traf6 traf6,LOC107730254,LOC107696643 coding upstream 160938 27276107 ~ 27280895 (-)
mfge8a mfge8a,LOC107562516,LOC107707873,LOC107696641,LOC107694094,LOC107730255,LOC108259203 coding upstream 190132 27305301 ~ 27314846 (-)
brsk2b brsk2b,brsk2a,LOC107600443,LOC107696635,LOC108275078,LOC108239952,LOC107389007,LOC107695372,LOC107730259 coding upstream 374888 27490057 ~ 27600784 (-)
LOC122349621 NA non-coding downstream 108565 26960242 ~ 26996951 (-)
G56153 NA non-coding downstream 211929 26891300 ~ 26893587 (-)
G56134 NA non-coding downstream 376391 26728905 ~ 26729125 (-)
LOC122349585 NA non-coding downstream 402103 26671615 ~ 26703413 (-)
G56083 NA non-coding downstream 572679 26532141 ~ 26532837 (-)
G56206 NA non-coding upstream 50975 27166144 ~ 27166500 (-)
G56208 NA non-coding upstream 52632 27167801 ~ 27168124 (-)
G56254 LOC107707857,LOC107694087,LOC107562499 non-coding upstream 186096 27301265 ~ 27301982 (-)
G56269 NA non-coding upstream 222538 27337707 ~ 27337991 (-)
G56334 NA non-coding upstream 492190 27607359 ~ 27607594 (-)
si:ch211-260e23.7 si:ch211-260e23.7,LOC107736736,LOC107562536,LOC107698628 other downstream 1248278 25854780 ~ 25857238 (-)
ciao2b fam96b,LOC107681502,LOC107673764 other downstream 1677491 25425644 ~ 25428025 (-)
rrad rrad,LOC107728691,LOC107564552,LOC107725029 other downstream 1681923 25421615 ~ 25423593 (-)
G55732 htr5ab,LOC107684958,LOC107591053,LOC107742155,LOC107659435,LOC107598724 other downstream 3364383 23736039 ~ 23741133 (-)
nom1 nom1,LOC107724412,LOC107684778,LOC107653288,LOC107742133 other downstream 4046735 23051190 ~ 23058781 (-)
hsd17b12b hsd17b12b,dh12b,LOC107701268,LOC107757588,LOC107600455,LOC107695363,LOC107730274 other upstream 666489 27781658 ~ 27825021 (-)
crtc3 LOC107701275,LOC107695354,LOC107757665,LOC107596420 other upstream 800328 27915497 ~ 27950958 (-)
tp53bp1 tp53bp1,LOC107600464,LOC107596411,LOC107757765 other upstream 906540 28021709 ~ 28041165 (-)
ppip5k1a ppip5k1a,LOC107695346,LOC107701280,LOC107596413,LOC107730229,LOC107757809 other upstream 954898 28070067 ~ 28096957 (-)
katnb1 katnb1,LOC107707908,LOC107711579 other upstream 1176967 28292136 ~ 28301811 (-)

Expression


Co-expression Network