lmo1 (lmo1,rbtn1,LOC107085592,LOC107593328)


Basic Information

Item Value
gene id lmo1
gene name lmo1,rbtn1,LOC107085592,LOC107593328
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 16155107 ~ 16182473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243286.1
CGCGCATTTATTCAGTAGCAGGAGCAGGAGCGCGCGGAGCGCATAAATTGGGTGAGAAAGGCAGCGTGAGCATGCTGTTAGGAGTTGTCAGCCTCAGAATTGGATTTCTTGAATATAGTTACAGTTTCGGAGCAAATGAGAACTGGGAGGAACACGTTTCTACTCCGAGAATAGCTTCTTCGCGGCAGCTCAATTTAAACGGGTGTTTAAATTAGATTCGAGTTAGTGTAGTCGTTTCATTTTCGCATGGAATGCACCGCGGCGTCTCACTTTAGTTTTAGACAACGTTAATTGCAAGCGTGGATATTACTGACGCGCTGCTGCGTACGCGAATACAACTGAAGGGACATCGCTGCATATAATCTCCgaaatacattaaacaatagaataacagacacacacacacacgtttctcTACATGGCTTTCCGTCTCTGAACAGCGGAAAACCACACAGACGAGCCTCCCTGTGTAATTAAAGCTTGCGGCAGCAACGCGGacgattattattttgttgttgcaaAGCAATTTCTTCTCAGAGACGCGAGCGGCGCGCGCAGAAGTGTGCTGGAGCCGAGAGCGGATCGCCTGGAGCCGGACTCCTCGCTCCTCAGGACGATGGTGTTAGACAAGGAAGAGGGACAGAAATGGGGGAAGGGTCTACTACCGAGATTCCAGGCTGTGCAAAGACTGATGACAGGTGTGCCGATGCTCTCCGTCCAGCCCAAAGGAAAACAGAAGGGATGCGCCGGCTGCAACCGTAAGATTAAAGACCGCTACCTGCTCAAGGCCCTGGACAAATACTGGCACGAAGACTGCCTGAAATGTGCCTGCTGCGACTGCCGCCTGGGGGAGGTGGGCTCCACCCTCTACACCAAAGCCAATCTCATCCTCTGTCGCAGGGACTACCTGAGGCTCTTTGGTACAACGGGGAACTGTGCAGCCTGCAGTAAACTGATCCCAGCCTTTGAAATGGTGATGAGGGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGgTTTTGTGTGGGCGACAAGTTTTTCCTAAAAAACAACATGATTCTGTGTCAGATGGACTATGAGGAGGGGCAGCTCAACGGGAGCTTTGAGACACAAGTTCAATAGCCAATCAAACGACGGCAGCGGCAGCTCTCggtccacacacacaaacacacgcttaTGTGCGATGGATGTTCTGCTGCACTCAGAGAGAAGAGCATCTGTCTGCTTGCCTGCAATACTTTTTACAGTAAAAGCCCTATTGGTCCCTGAGGACTCTATTGTAAATGTACTACTTTTTGGCCCTTCCTGTCCCCAACACTGAGCAGTTACACGTTTTGATGTACAGTTGTGCCTGCTTAGCTGAGCACTGTATTGCCTGTAtggtttttgtgatgtttttctgttttggtcTCTTtaactctctttctttctttctctctctctctcacacacttgctctatttctctttctcttgttctTCTAATGCTTCTCTGAGGGTATGTACAGTctgttttctgtatatataaactggaacatttattttatgaaactgtaatgcaattttattaCCAGTGTGAATTAAAAAGATTCTTAAATGTT
>XM_043243287.1
CGTTCGTCGGGTTTACAGGGGAAGGAAAGCGCGTACGCTACTCTAAAAGACTTAAGTCGTGCTGAATACGGTGTAGTTCGCGGACTGTCCCCGCGTATGAAATATGATATTATCTGTTTAAAAGACGCTGACAGAGCCGAAGCTGCGTCGCTATTCACCGCAGTATCAGTTAGCGCTCGGTCAAATCTGTGAAGTTGGGGAGATGTTTTATCAGAAGCGGCTGCCCTCGCTCACAGGTGTGCCGATGCTCTCCGTCCAGCCCAAAGGAAAACAGAAGGGATGCGCCGGCTGCAACCGTAAGATTAAAGACCGCTACCTGCTCAAGGCCCTGGACAAATACTGGCACGAAGACTGCCTGAAATGTGCCTGCTGCGACTGCCGCCTGGGGGAGGTGGGCTCCACCCTCTACACCAAAGCCAATCTCATCCTCTGTCGCAGGGACTACCTGAGGCTCTTTGGTACAACGGGGAACTGTGCAGCCTGCAGTAAACTGATCCCAGCCTTTGAAATGGTGATGAGGGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGgTTTTGTGTGGGCGACAAGTTTTTCCTAAAAAACAACATGATTCTGTGTCAGATGGACTATGAGGAGGGGCAGCTCAACGGGAGCTTTGAGACACAAGTTCAATAGCCAATCAAACGACGGCAGCGGCAGCTCTCggtccacacacacaaacacacgcttaTGTGCGATGGATGTTCTGCTGCACTCAGAGAGAAGAGCATCTGTCTGCTTGCCTGCAATACTTTTTACAGTAAAAGCCCTATTGGTCCCTGAGGACTCTATTGTAAATGTACTACTTTTTGGCCCTTCCTGTCCCCAACACTGAGCAGTTACACGTTTTGATGTACAGTTGTGCCTGCTTAGCTGAGCACTGTATTGCCTGTAtggtttttgtgatgtttttctgttttggtcTCTTtaactctctttctttctttctctctctctctcacacacttgctctatttctctttctcttgttctTCTAATGCTTCTCTGAGGGTATGTACAGTctgttttctgtatatataaactggaacatttattttatgaaactgtaatgcaattttattaCCAGTGTGAATTAAAAAGATTCTTAAATGTT
>XM_043243288.1
CATTTATTCAGTAGCAGGAGCAGGAGCGCGCGGAGCGCATAAATTGGGTGAGAAAGGCAGCGTGAGCATGCTGTTAGGAGTTGTCAGCCTCAGAATTGGATTTCTTGAATATAGTTACAGTTTCGGAGCAAATGAGAACTGGGAGGAACACGTTTCTACTCCGAGAATAGCTTCTTCGCGGCAGCTCAATTTAAACGGGTGTTTAAATTAGATTCGAGTTAGTGTAGTCGTTTCATTTTCGCATGGAATGCACCGCGGCGTCTCACTTTAGTTTTAGACAACGTTAATTGCAAGCGTGGATATTACTGACGCGCTGCTGCGTACGCGAATACAACTGAAGGGACATCGCTGCATATAATCTCCgaaatacattaaacaatagaataacagacacacacacacacgtttctcTACATGGCTTTCCGTCTCTGAACAGCGGAAAACCACACAGACGAGCCTCCCTGTGTAATTAAAGCTTGCGGCAGCAACGCGGacgattattattttgttgttgcaaAGCAATTTCTTCTCAGAGACGCGAGCGGCGCGCGCAGAAGTGTGCTGGAGCCGAGAGCGGATCGCCTGGAGCCGGACTCCTCGCTCCTCAGGACGATGGTGTTAGACAAGGAAGAGGGTGTGCCGATGCTCTCCGTCCAGCCCAAAGGAAAACAGAAGGGATGCGCCGGCTGCAACCGTAAGATTAAAGACCGCTACCTGCTCAAGGCCCTGGACAAATACTGGCACGAAGACTGCCTGAAATGTGCCTGCTGCGACTGCCGCCTGGGGGAGGTGGGCTCCACCCTCTACACCAAAGCCAATCTCATCCTCTGTCGCAGGGACTACCTGAGGCTCTTTGGTACAACGGGGAACTGTGCAGCCTGCAGTAAACTGATCCCAGCCTTTGAAATGGTGATGAGGGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGgTTTTGTGTGGGCGACAAGTTTTTCCTAAAAAACAACATGATTCTGTGTCAGATGGACTATGAGGAGGGGCAGCTCAACGGGAGCTTTGAGACACAAGTTCAATAGCCAATCAAACGACGGCAGCGGCAGCTCTCggtccacacacacaaacacacgcttaTGTGCGATGGATGTTCTGCTGCACTCAGAGAGAAGAGCATCTGTCTGCTTGCCTGCAATACTTTTTACAGTAAAAGCCCTATTGGTCCCTGAGGACTCTATTGTAAATGTACTACTTTTTGGCCCTTCCTGTCCCCAACACTGAGCAGTTACACGTTTTGATGTACAGTTGTGCCTGCTTAGCTGAGCACTGTATTGCCTGTAtggtttttgtgatgtttttctgttttggtcTCTTtaactctctttctttctttctctctctctctcacacacttgctctatttctctttctcttgttctTCTAATGCTTCTCTGAGGGTATGTACAGTctgttttctgtatatataaactggaacatttattttatgaaactgtaatgcaattttattaCCAGTGTGAATTAAAAAGATTCTTAAATGTT
>XM_043243289.1
TATATAGGGCTTCTAAAAGCATATCTCAGCTGGCTCTTTTTTGGAAAACAACAAGAGGTTTCTCCGAGATGGCAGAAACAAGATGATTAGCTCAGACAGAATACAGCGCTCCTCACATCAGCTAACTCATCCTGGATGTTGCTCTAGCCTGGTGAGACAGGAAGCGCTAGCCGCTTTAAATCTGGGTTAGGAAACCTGTCACGGCGTGATGGTGTCATTCAGTTACCCTCAAACCTGAATTCATCCAGGTGTGCCGATGCTCTCCGTCCAGCCCAAAGGAAAACAGAAGGGATGCGCCGGCTGCAACCGTAAGATTAAAGACCGCTACCTGCTCAAGGCCCTGGACAAATACTGGCACGAAGACTGCCTGAAATGTGCCTGCTGCGACTGCCGCCTGGGGGAGGTGGGCTCCACCCTCTACACCAAAGCCAATCTCATCCTCTGTCGCAGGGACTACCTGAGGCTCTTTGGTACAACGGGGAACTGTGCAGCCTGCAGTAAACTGATCCCAGCCTTTGAAATGGTGATGAGGGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGgTTTTGTGTGGGCGACAAGTTTTTCCTAAAAAACAACATGATTCTGTGTCAGATGGACTATGAGGAGGGGCAGCTCAACGGGAGCTTTGAGACACAAGTTCAATAGCCAATCAAACGACGGCAGCGGCAGCTCTCggtccacacacacaaacacacgcttaTGTGCGATGGATGTTCTGCTGCACTCAGAGAGAAGAGCATCTGTCTGCTTGCCTGCAATACTTTTTACAGTAAAAGCCCTATTGGTCCCTGAGGACTCTATTGTAAATGTACTACTTTTTGGCCCTTCCTGTCCCCAACACTGAGCAGTTACACGTTTTGATGTACAGTTGTGCCTGCTTAGCTGAGCACTGTATTGCCTGTAtggtttttgtgatgtttttctgttttggtcTCTTtaactctctttctttctttctctctctctctcacacacttgctctatttctctttctcttgttctTCTAATGCTTCTCTGAGGGTATGTACAGTctgttttctgtatatataaactggaacatttattttatgaaactgtaatgcaattttattaCCAGTGTGAATTAAAAAGATTCTTAAATGTT

Function

symbol description
lmo1 Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Is expressed in several structures, including anterior axial hypoblast; brain; neural tube; pancreas primordium; and presumptive diencephalon. Orthologous to human LMO1 (LIM domain only 1).

NR:

description
PREDICTED: rhombotin-1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243286.1 True 1622 mRNA 0.47 5 16155107 16182473
XM_043243287.1 False 1160 mRNA 0.47 4 16155107 16181684
XM_043243288.1 False 1558 mRNA 0.47 4 16155107 16182469
XM_043243289.1 False 1172 mRNA 0.46 4 16155107 16168255

Neighbor

gene id symbol gene type direction distance location
ric3a LOC107674436,LOC107750649,LOC107700610,LOC107754661 coding downstream 26591 16124955 ~ 16128516 (-)
pde3b pde3b,LOC107688169,LOC107754680,LOC107750617,LOC107700615 coding downstream 139551 15973200 ~ 16015556 (-)
calca calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683 coding downstream 185663 15959369 ~ 15969444 (-)
nucb2a nucb2a,LOC107688161,LOC107585938,LOC107750551,LOC107754687,LOC107593409 coding downstream 546662 15603828 ~ 15608445 (-)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107688160,LOC107750553,LOC107754690 coding downstream 600914 15533193 ~ 15554193 (-)
stk33 stk33,LOC107586037,LOC107674434,LOC107700606,LOC107750648,LOC107754660,LOC107593317 coding upstream 94990 16277463 ~ 16291172 (-)
rerglb rerglb,LOC107674441,LOC107586038,LOC107593310,LOC107700598,LOC108429104,LOC108271353 coding upstream 109937 16292410 ~ 16298728 (-)
trim66 LOC107674426,LOC107586007,LOC107700605,LOC107593296,LOC107754676,LOC107750616 coding upstream 120562 16303035 ~ 16321109 (-)
dennd2b st5,LOC107674427,LOC107750539,LOC107585951,LOC107593270,LOC107700604,LOC107754674 coding upstream 139821 16322294 ~ 16366578 (-)
tmem9b tmem9b,LOC107674442,LOC107750540,LOC107585953,LOC107754675,LOC107700603,LOC107593285 coding upstream 184579 16367052 ~ 16369287 (-)
LOC122349251 NA non-coding downstream 43555 16108611 ~ 16111552 (-)
G53403 NA non-coding downstream 130101 16023328 ~ 16025006 (-)
G53398 NA non-coding downstream 139048 16015804 ~ 16016059 (-)
G53397 cyp2r1,LOC107688167,LOC107585944,LOC107750548,LOC107700616,LOC107594282 non-coding downstream 187453 15967251 ~ 15967654 (-)
G53353 NA non-coding downstream 304852 15807758 ~ 15850255 (-)
G53749 NA non-coding upstream 362830 16545303 ~ 16545577 (-)
G53756 NA non-coding upstream 382029 16564502 ~ 16564873 (-)
G53762 NA non-coding upstream 382708 16565181 ~ 16565491 (-)
G53763 NA non-coding upstream 383144 16565617 ~ 16566318 (-)
G53764 NA non-coding upstream 384194 16566667 ~ 16567143 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 1179939 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 2009827 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 2064666 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 2081408 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 2086607 14065015 ~ 14068500 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 377945 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 699420 16881893 ~ 16934252 (-)
serf2b NA other upstream 863971 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 2483800 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 2559687 18742160 ~ 18794207 (-)

Expression


Co-expression Network