calca (calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683)


Basic Information

Item Value
gene id calca
gene name calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 15959369 ~ 15969444 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243670.1
AACCGGAGATTATTAGCCAAACGGTACTACTCTCATGGGTTACAGATTACAAGAACTGCGATACTGCTAATGTGATAACCTCATGTGTGACTGTGCGCTCTCTCCAACTCTGACATACATTACCATGCCAGAGCCTTTTCTCTGAATGACCAGAAGCCCGAGGACATCCTGATTGGCTGGATGAGGGAGCAGTGAGCTCTGGTTGGCTGTCGGAGAATCATTAAACACCCACACTGTCAATAGTGAGACCCACATGGTGGGTATATAGGCAGGTGTATTGTAGCTTAATGCAACAGACTCAAAATTTCATCAATTTGAAATATCCCCTCTATTTTGGGACAACTCTTTTCTATATCTATTGCACGAAGCCGAACATCTCAAGGGGACCATGGTTATGTTGAAGATCTCCGCTTTCCTTGTTGCCTACGCTCTGATTATTTGCCAGATGTACAGCTCTAATGCAACTCCTGCCAGGCCTGCACTGGAATCATCACCAGATCGAACTACGCTTACCGACTACGAAGCGAGAAGATTGCTGCACGCAATCATCAAAGAATTCATGCAGATGACCGCGGAGGACATGGAGCAACAGTCGACTGAGGAAAACAGCTTGGGTAGACCCGTGTCCAAGCGCTGCTCCAGCCTCAGCACTTGTGTGCTGGGGAAACTGTCCCAGGAGCTGCACAAACTGCAGACATATCCACGCACCAATGTAGGAGCGGGTACGCCGGGCAAGAAGCGCAGCCTGGAAGAGAGTGATGTGTTGGCTGGATACGGAGAGGCGCTCAATCGTGTCTAATCGGCAGCGGCTGTAAACCCGTGCTTGGCCCTGATATGCGAGTGCATGTGGAAGTTTGCTTGCCTGATTGACttgaaagaacatttttttctactttcttTGGCAGAGTAGCAAATCTCAGACAGACTCTGTTCCACTAATTTCATATAGTCACCGGATCTATTTGGGTTATATAACTGATTCCTGAAATCGGAGAGCTCTCATTGGCAGATAGGGCTTAACGATGAGCTTTTTTTAACCCACAGCAAAATTCCTGTCTTGTGTGATTTGACTTCGTTCTTGAtctaataaagatatttttagaaggagatctcttttttttgcttgttgtttgtttaaagCGCAGAAATGAACATAATTCTAATATAACAAGTTATAAGTAATCAGGCTTAAGTACCCACTTTAGGTAAGATATATTActgctgccatttttctttttttgtaaaaaatatttaatattgcacatttcaaattcttcattttaataCGTTGAATCATTTCTTACAAATGAATATT
>XM_043243671.1
AACCGGAGATTATTAGCCAAACGGTACTACTCTCATGGGTTACAGATTACAAGAACTGCGATACTGCTAATGTGATAACCTCATGTGTGACTGTGCGCTCTCTCCAACTCTGACATACATTACCATGCCAGAGCCTTTTCTCTGAATGACCAGAAATGTGATTTTCCACATTGATGCTCCTTTCTGTGGTATCTTGGGCCTTATTATCTATGAAGTTTTCAACTGAGCCATTCCATTGGTATGGAGAGATAAATCCAAAGCCCGAGGACATCCTGATTGGCTGGATGAGGGAGCAGTGAGCTCTGGTTGGCTGTCGGAGAATCATTAAACACCCACACTGTCAATAGTGAGACCCACATGGTGGGTATATAGGCAGGTGTATTGTAGCTTAATGCAACAGACTCAAAATTTCATCAATTTGAAATATCCCCTCTATTTTGGGACAACTCTTTTCTATATCTATTGCACGAAGCCGAACATCTCAAGGGGACCATGGTTATGTTGAAGATCTCCGCTTTCCTTGTTGCCTACGCTCTGATTATTTGCCAGATGTACAGCTCTAATGCAACTCCTGCCAGGCCTGCACTGGAATCATCACCAGATCGAACTACGCTTACCGACTACGAAGCGAGAAGATTGCTGCACGCAATCATCAAAGAATTCATGCAGATGACCGCGGAGGACATGGAGCAACAGTCGACTGAGGAAAACAGCTTGGGTAGACCCGTGTCCAAGCGCTGCTCCAGCCTCAGCACTTGTGTGCTGGGGAAACTGTCCCAGGAGCTGCACAAACTGCAGACATATCCACGCACCAATGTAGGAGCGGGTACGCCGGGCAAGAAGCGCAGCCTGGAAGAGAGTGATGTGTTGGCTGGATACGGAGAGGCGCTCAATCGTGTCTAATCGGCAGCGGCTGTAAACCCGTGCTTGGCCCTGATATGCGAGTGCATGTGGAAGTTTGCTTGCCTGATTGACttgaaagaacatttttttctactttcttTGGCAGAGTAGCAAATCTCAGACAGACTCTGTTCCACTAATTTCATATAGTCACCGGATCTATTTGGGTTATATAACTGATTCCTGAAATCGGAGAGCTCTCATTGGCAGATAGGGCTTAACGATGAGCTTTTTTTAACCCACAGCAAAATTCCTGTCTTGTGTGATTTGACTTCGTTCTTGAtctaataaagatatttttagaaggagatctcttttttttgcttgttgtttgtttaaagCGCAGAAATGAACATAATTCTAATATAACAAGTTATAAGTAATCAGGCTTAAGTACCCACTTTAGGTAAGATATATTActgctgccatttttctttttttgtaaaaaatatttaatattgcacatttcaaattcttcattttaataCGTTGAATCATTTCTTACAAATGAATATT
>XM_043243672.1
AACCGGAGATTATTAGCCAAACGGTACTACTCTCATGGGTTACAGATTACAAGAACTGCGATACTGCTAATGTGATAACCTCATGTGTGACTGTGCGCTCTCTCCAACTCTGACATACATTACCATGCCAGAGCCTTTTCTCTGAATGACCAGAAGCCCGAGGACATCCTGATTGGCTGGATGAGGGAGCAGTGAGCTCTGGTTGGCTGTCGGAGAATCATTAAACACCCACACTGTCAATAGTGAGACCCACATGGTGGGTATATAGGCAGGTGTATTGTAGCTTAATGCAACAGACTCAAAATTTCATCAATTTGAAATATCCCCTCTATTTTGGGACAACTCTTTTCTATATCTATTGCACGAAGCCGAACATCTCAAGGGGACCATGGTTATGTTGAAGATCTCCGCTTTCCTTGTTGCCTACGCTCTGATTATTTGCCAGATGTACAGCTCTAATGCAACTCCTGCCAGGCCTGCACTGGAATCATCACCAGATCGAACTACGCTTACCGACTACGAAGCGAGAAGATTGCTGCACGCAATCATCAAAGAATTCATGCAGATGACCGCGGAGGACATGGAGCAACAGTCGACTGAGGAAAACAGTGTTACAACACAGAAGAGAGCTTGTAACACGGCCACATGTGTGACCCATCGCCTGGCAGACTTCCTGAGCCGCTCGGGGGGAATTGGAAGCAGCAAATTTGTCCCCACCAATGTGGGCTCTCAGGCGTTCGGCAGACGAAGGAGGCTCAGTCAGGAGTAGTCGGCTGAAAGGGTCTTCGTGAAATGGTCACCAGTCTACACGTCCACAGTTCTTCTTTGATTGCTGTcaataaaacagaaagcatCATGTCCACATTATGACCCCTGGGAATGGAAACTCCTCACTTTCATCTGAATGGACTCCAGTTGATAGCACTGATCGTTTCCATCCAGCCAGACATTATAAccgctcctttttttttttttggctcttcCACGAAGCAacataagttaaaaaaaaaaaagcaaaagaaatgagaaagcGGTGATCAGTAGCCCTCATTTTTCTACTCATTTGGATCCGAGGAAGAGCATTGCTTCATTCTTTCCTCTCAGCAGAGAGCACATTCAGTATGTACAGTCTGGTTTGGCCCATGTTCCTTTAATGTGTCTCAGCACATTACGGTATTTTGGGGATCATATTAAAGCAGTGCCTCATAAAAAGGCTTCCCTGAATATGGATGTGTCTTGTGCCTTGATGTAACACACTTTACATGCCGCTGTTGTACAGTATGTTTGAATTAAAAGAGGGAGGTTCTACCACTGAATTACAAATTGTAACAATTGTGAATTTGAGcaagattaaaatgtattttagatacATAAGGTTTGGGGTACTTGATTTATTGACTGACTGGTTGTTTTAGTAATTGGTCTGCA
>XM_043243674.1
AAATTTCATCAATTTGAAATATCCCCTCTATTTTGGGACAACTCTTTTCTATATCTATTGCACGAAGCCGAACATCTCAAGGGGACCATGGTTATGTTGAAGATCTCCGCTTTCCTTGTTGCCTACGCTCTGATTATTTGCCAGATGTACAGCTCTAATGCAACTCCTGCCAGGCCTGCACTGGAATCATCACCAGATCGAACTACGCTTACCGACTACGAAGCGAGAAGATTGCTGCACGCAATCATCAAAGAATTCATGCAGATGACCGCGGAGGACATGGAGCAACAGTCGACTGAGGAAAACAGCTTGGGTAGACCCGTGTCCAAGCGCTGCTCCAGCCTCAGCACTTGTGTGCTGGGGAAACTGTCCCAGGAGCTGCACAAACTGCAGACATATCCACGCACCAATGTAGGAGCGGGTACGCCGGGCAAGAAGCGCAGCCTGGAAGAGAGTGATGTGTTGGCTGGATACGGAGAGGCGCTCAATCGTGTCTAATCGGCAGCGGCTGTAAACCCGTGCTTGGCCCTGATATGCGAGTGCATGTGGAAGTTTGCTTGCCTGATTGACttgaaagaacatttttttctactttcttTGGCAGAGTAGCAAATCTCAGACAGACTCTGTTCCACTAATTTCATATAGTCACCGGATCTATTTGGGTTATATAACTGATTCCTGAAATCGGAGAGCTCTCATTGGCAGATAGGGCTTAACGATGAGCTTTTTTTAACCCACAGCAAAATTCCTGTCTTGTGTGATTTGACTTCGTTCTTGAtctaataaagatatttttagaaggagatctcttttttttgcttgttgtttgtttaaagCGCAGAAATGAACATAATTCTAATATAACAAGTTATAAGTAATCAGGCTTAAGTACCCACTTTAGGTAAGATATATTActgctgccatttttctttttttgtaaaaaatatttaatattgcacatttcaaattcttcattttaataCGTTGAATCATTTCTTACAAATGAATATTG

Function

symbol description
calca Predicted to enable calcitonin receptor binding activity. Acts upstream of or within calcium ion homeostasis and chloride ion homeostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including heart; integument; intestine; nervous system; and ultimobranchial body. Human ortholog(s) of this gene implicated in migraine and osteoporosis. Orthologous to several human genes including CALCA (calcitonin related polypeptide alpha).

NR:

description
PREDICTED: calcitonin gene-related peptide-like isoform X3

GO:

id name namespace
GO:0055074 calcium ion homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K12332 CALC; calcitonin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243670.1 False 1315 mRNA 0.43 5 15960662 15969444
XM_043243671.1 False 1419 mRNA 0.43 6 15960662 15969444
XM_043243672.1 True 1428 mRNA 0.44 6 15959369 15969444
XM_043243674.1 False 1015 mRNA 0.42 4 15960661 15963235

Neighbor

gene id symbol gene type direction distance location
nucb2a nucb2a,LOC107688161,LOC107585938,LOC107750551,LOC107754687,LOC107593409 coding downstream 350924 15603828 ~ 15608445 (-)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107688160,LOC107750553,LOC107754690 coding downstream 405176 15533193 ~ 15554193 (-)
si:ch211-107p11.3 si:ch211-107p11.3,LOC107750654,LOC107586032,LOC107688174,LOC107754692 coding downstream 461191 15495872 ~ 15498178 (-)
phf23b phf23,LOC107687030,LOC107687050,LOC107561685,LOC107593540 coding downstream 687039 15266887 ~ 15272330 (-)
plscr3b plscr3b,plscr3,LOC107593564,LOC107754701,LOC107687051,LOC107561702 coding downstream 697817 15253221 ~ 15261552 (-)
pde3b pde3b,LOC107688169,LOC107754680,LOC107750617,LOC107700615 coding upstream 3756 15973200 ~ 16015556 (-)
ric3a LOC107674436,LOC107750649,LOC107700610,LOC107754661 coding upstream 155511 16124955 ~ 16128516 (-)
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding upstream 185663 16155107 ~ 16182473 (-)
stk33 stk33,LOC107586037,LOC107674434,LOC107700606,LOC107750648,LOC107754660,LOC107593317 coding upstream 308019 16277463 ~ 16291172 (-)
rerglb rerglb,LOC107674441,LOC107586038,LOC107593310,LOC107700598,LOC108429104,LOC108271353 coding upstream 322966 16292410 ~ 16298728 (-)
G53353 NA non-coding downstream 109114 15807758 ~ 15850255 (-)
G53338 NA non-coding downstream 273301 15685631 ~ 15686068 (-)
G53326 rps13,LOC107586033 non-coding downstream 347486 15609486 ~ 15611883 (-)
G53309 ext2,LOC107750554,LOC107586005,LOC107754691 non-coding downstream 449688 15509180 ~ 15509681 (-)
G53307 NA non-coding downstream 455473 15499921 ~ 15503896 (-)
G53398 NA non-coding upstream 46360 16015804 ~ 16016059 (-)
G53403 NA non-coding upstream 53884 16023328 ~ 16025006 (-)
LOC122349251 NA non-coding upstream 139167 16108611 ~ 16111552 (-)
G53749 NA non-coding upstream 575859 16545303 ~ 16545577 (-)
G53756 NA non-coding upstream 595058 16564502 ~ 16564873 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 984201 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 1814089 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 1868928 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 1885670 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 1890869 14065015 ~ 14068500 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 590974 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 912449 16881893 ~ 16934252 (-)
serf2b NA other upstream 1077000 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 2696829 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 2772716 18742160 ~ 18794207 (-)

Expression


Co-expression Network