G53326 (rps13,LOC107586033)


Basic Information

Item Value
gene id G53326
gene name rps13,LOC107586033
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 15609486 ~ 15611883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU79121
ttttttctgattaaaaaaaacaaaacaaaaaaaaacaaaatattagaaAACTTTAATCTGGGTGTTAGCTAGACATACAGTTAGATCTTTGTCCATTCAAACGTAACACCCATTAGACAATAGCTAATATATAAACACcttttttgaacaatttaatttattattcttaGTGTACACTGtcaataaattcaatgcacaaaATGCTAGCCATAATTTTAATGTCTGAAATTATGTAAGAGAAAAGAGCAATGTGAATATTCGGTTATGATGGATTCTCAAAAAGACGTTTACATGACAGAATTCAGACACGCGTCCCAATGTATTCCACACAATGCAACTTAAGAAAACCAGtctcacagaaacaactgaattgatccaaatatttttatttgtccaaAAACTGCAAATTTATGCCACCAGTGCAGAAGCTGTGGAGGATTCACTGTggatgaaaacacacaaaatcagATAAATttaggaaaaacacattttgaaagaaAGGCAAAGCAGTTTTTTGTGTGAAGGGGACTGGCAGTGCTGGCACAAAAAAGCCAAACTGCTAATTTACCTCCAACCTTTATCTAGCACATAAGAAATATCTCAGTTCTTACAAGCAAAGAAAGGGACAATGAAATGTGCATTAATTCCTGATGGAATTATTTGTAATGtcataaaacaagtaaaacaaacaCTCACTACTTCCAGTTGGGGGCAAGTACTCTCTTGGTCTTGTAGTAGCGGGCAAGCCTGTGGATTCTGCTCTCAACCAGAATCAGGCGGAACTTAGCATCCTTGCCTTTCTGTTCCTTTCCAAGTGCTTCCTCACAGCGACAGCCTTCTTGATGAGGTGGTAGAGATCCTCAGGCAGGTCAGGGGCCAGACCTTTGGACTTCAGGATCCTAAGGATCTTGTTGCCAGTGACAAAACGCACCTGAGCAACACCATGGGAATCCCTCAGGATCACACCTAATGAGAAAATGGCAGGAGATGTTAGGTCCATATGTGAGGGAGTCAGACCCTTTTTGGCCAATTTGAAGATTTGCTCTTTAACATCATCGGATGTCAGCTTGAGccactaaaatacaaaacaattgacAATCAGTCTTGTAGATTTAGAACGCCATTATTGTAACAAAACTCTGAATCAATGGACTTACT
>TU79122
ttttttctgattaaaaaaaacaaaacaaaaaaaaacaaaatattagaaAACTTTAATCTGGGTGTTAGCTAGACATACAGTTAGATCTTTGTCCATTCAAACGTAACACCCATTAGACAATAGCTAATATATAAACACcttttttgaacaatttaatttattattcttaGTGTACACTGtcaataaattcaatgcacaaaATGCTAGCCATAATTTTAATGTCTGAAATTATGTAAGAGAAAAGAGCAATGTGAATATTCGGTTATGATGGATTCTCAAAAAGACGTTTACATGACAGAATTCAGACACGCGTCCCAATGTATTCCACACAATGCAACTTAAGAAAACCAGtctcacagaaacaactgaattgatccaaatatttttatttgtccaaAAACTGCAAATTTATGCCACCAGTGCAGAAGCTGTGGAGGATTCACTGTggatgaaaacacacaaaatcagATAAATttaggaaaaacacattttgaaagaaAGGCAAAGCAGTTTTTTGTGTGAAGGGGACTGGCAGTGCTGGCACAAAAAAGCCAAACTGCTAATTTACCTCCAACCTTTATCTAGCACATAAGAAATATCTCAGTTCTTACAAGCAAAGAAAGGGACAATGAAATGTGCATTAATTCCTGATGGAATTATTTGTAATGtcataaaacaagtaaaacaaacaCTCACTACTTCCAGTTGGGGGCAAGTACTCTCTTGGTCTTGTAGTAGCGGGCAAGCCTGTGGATTCTGCTCTCAACCAGAATCAGGCGGAACTTAGCATCCTTGTCCTTCTGTTCCTTTCCAAGTGCTTCCTCACAGCGACAGCCTTCTTGATGAGGTGGTAGAGATCCTCAGGCAGGTCAGGGGCCAGACCTTTGGACTTCAGGATCCTAAGGATCTTGTTGCCAGTGACAAAACGCACCTGAGCAACACCATGGGAATCCCTCAGGATCACACCATCTGTGAGGGAGTCAGACCCTTTTTGGCCAATTTGAAGATTTGCTCTTTAACATCATCGGATGTCAGCTTGAGccactaaaatacaaaacaattgacAATCAGTCTTGTAGATTTAGAACGCCATTATTGTAACAAAACTCTGAATCAATGGACTTACTGTTGGGACACTTCGTCTATACGGCAGCGCAGACTGGGACAAGcccttgcttaaaaaaaaaaagaacatttaacagttaaatacatttttcacaatgAAACAGTAAACTACAATCTCCCTTGTCCATTAATAAGCCACACTGTAAACAATAACTGTAAACATTAACAGGCAATAAATAAAGCCTAAGTCCGTGAACAGAAGGGTAAGTTATCCTAAAACTAAACTGACTTTGAAATAAGGGTTTGACTATTAAATGTtctgataaatgcataaaacgTTTAGGACGTGGTCTGATCAGCCCTAACGAACCGTCGAACGCATCCGGTACACAAACGTAGGTTATGTTAAACTAAACGATGTGACACGACAACAATCGGAGCGTACAGATCAACCGTGTGTGAAATGAATCGGCGTGTAAAGCTCGTTCATGAGCCCATCCTGCAGCGCCTCACTCTACATGTGCTGCCGAACGAGGAGGGAACGTGGGACTCGATGTACTTCTTAAAATCTCCTTTCTAACTCCAAAGGAAACCGTATTTGAGACTCAGCCTATGCTATGAATAATTAACAGTACATTAGGGACGGTAGTGTGACCTATAGAACGCGTTTTTAgcgtaaaataaacatttacccAGGAGCGTGCATACGACCCATGATGGCGGGTTTGAGAGCgaggaagagaaagacagagccGAGGCCGAGCGGAAGTGAAGTACGGAGGCGGAAGTGATGTCAAATATACCTTCCTGTCTGTCCGTTGATTTCATGATCTTTAACTTGAGTATTTTCCTTTTCCCATTTTCTTTGAGAC
>TU79123
ttttttctgattaaaaaaaacaaaacaaaaaaaaacaaaatattagaaAACTTTAATCTGGGTGTTAGCTAGACATACAGTTAGATCTTTGTCCATTCAAACGTAACACCCATTAGACAATAGCTAATATATAAACACcttttttgaacaatttaatttattattcttaGTGTACACTGtcaataaattcaatgcacaaaATGCTAGCCATAATTTTAATGTCTGAAATTATGTAAGAGAAAAGAGCAATGTGAATATTCGGTTATGATGGATTCTCAAAAAGACGTTTACATGACAGAATTCAGACACGCGTCCCAATGTATTCCACACAATGCAACTTAAGAAAACCAGtctcacagaaacaactgaattgatccaaatatttttatttgtccaaAAACTGCAAATTTATGCCACCAGTGCAGAAGCTGTGGAGGATTCACTGTggatgaaaacacacaaaatcagATAAATttaggaaaaacacattttgaaagaaAGGCAAAGCAGTTTTTTGTGTGAAGGGGACTGGCAGTGCTGGCACAAAAAAGCCAAACTGCTAATTTACCTCCAACCTTTATCTAGCACATAAGAAATATCTCAGTTCTTACAAGCAAAGAAAGGGACAATGAAATGTGCATTAATTCCTGATGGAATTATTTGTAATGtcataaaacaagtaaaacaaacaCTCACTACTTCCAGTTGGGGGCAAGTACTCTCTTGGTCTTGTAGTAGCGGGCAAGCCTGTGGATTCTGCTCTCAACCAGAATCAGGCGGAACTTAGCATCCTTGCCTTTCTGTTCCTTTCCAAGTGCTTCCTCACAGCGACAGCCTTCTTGATGAGGTGGTAGAGATCCTCAGGCAGGTCAGGGGCCAGACCTTTGGACTTCAGGATCCTAAGGATCTTGTTGCCAGTGACAAAACGCACCTGAGCAACACCATGGGAATCCCTCAGGATCACACCTATGTGAGGGAGTCAGACCCTTTTTGGCCAATTTGAAGATTTGCTCTTTAACATCATCGGATGTCAGCTTGAGccactaaaatacaaaacaattgacAATCAGTCTTGTAGATTTAGAACGCCATTATTGTAACAAAACTCTGAATCAATGGACTTACT

Function

symbol description
rps13 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleolus. Orthologous to human RPS13 (ribosomal protein S13).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79121 False 1158 lncRNA 0.38 3 15610296 15611883
TU79122 True 1937 lncRNA 0.40 3 15609486 15611883
TU79123 False 1126 lncRNA 0.38 3 15610296 15611883

Neighbor

gene id symbol gene type direction distance location
nucb2a nucb2a,LOC107688161,LOC107585938,LOC107750551,LOC107754687,LOC107593409 coding downstream 1041 15603828 ~ 15608445 (-)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107688160,LOC107750553,LOC107754690 coding downstream 55293 15533193 ~ 15554193 (-)
si:ch211-107p11.3 si:ch211-107p11.3,LOC107750654,LOC107586032,LOC107688174,LOC107754692 coding downstream 111308 15495872 ~ 15498178 (-)
phf23b phf23,LOC107687030,LOC107687050,LOC107561685,LOC107593540 coding downstream 337156 15266887 ~ 15272330 (-)
plscr3b plscr3b,plscr3,LOC107593564,LOC107754701,LOC107687051,LOC107561702 coding downstream 347934 15253221 ~ 15261552 (-)
calca calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683 coding upstream 347486 15959369 ~ 15969444 (-)
pde3b pde3b,LOC107688169,LOC107754680,LOC107750617,LOC107700615 coding upstream 361317 15973200 ~ 16015556 (-)
ric3a LOC107674436,LOC107750649,LOC107700610,LOC107754661 coding upstream 513072 16124955 ~ 16128516 (-)
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding upstream 543224 16155107 ~ 16182473 (-)
stk33 stk33,LOC107586037,LOC107674434,LOC107700606,LOC107750648,LOC107754660,LOC107593317 coding upstream 665580 16277463 ~ 16291172 (-)
G53309 ext2,LOC107750554,LOC107586005,LOC107754691 non-coding downstream 99805 15509180 ~ 15509681 (-)
G53307 NA non-coding downstream 105590 15499921 ~ 15503896 (-)
G53276 LOC101886486,LOC101886504,LOC101886427 non-coding downstream 266718 15338076 ~ 15342768 (-)
G53121 NA non-coding downstream 654914 14952192 ~ 14954572 (-)
G53119 NA non-coding downstream 658852 14947805 ~ 14950634 (-)
G53338 NA non-coding upstream 73748 15685631 ~ 15686068 (-)
G53353 NA non-coding upstream 195875 15807758 ~ 15850255 (-)
G53397 cyp2r1,LOC107688167,LOC107585944,LOC107750548,LOC107700616,LOC107594282 non-coding upstream 355368 15967251 ~ 15967654 (-)
G53398 NA non-coding upstream 403921 16015804 ~ 16016059 (-)
G53403 NA non-coding upstream 411445 16023328 ~ 16025006 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 634318 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 1464206 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 1519045 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 1535787 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 1540986 14065015 ~ 14068500 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 948535 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 1270010 16881893 ~ 16934252 (-)
serf2b NA other upstream 1434561 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 3054390 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 3130277 18742160 ~ 18794207 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location