G53119


Basic Information

Item Value
gene id G53119
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 14947805 ~ 14950634 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU78740
TAGTGCTGGAGGCCAAGTTGGTGTCTTCATGTTTTAGCTGTCCATCCAGAGCCAGACCCCTCTTCTCTCGATTATTGCTCAGTGTGGGGGTGAGTGTGTACACCTTACAGAACGTGGAGCTGGGTGACACCTGGTCACTGCACGTGGTCACAACAAAACAGAGTGAGTCTTctgctttttgcattttagcAAAAACATATGCACTGACCATATTGTGACGATATTATGATTAATCTTCAGTACtagaaattgtttaaaaactgtattgTGAAAACTGaTGTTGAATGCGTTCATTCTGCAGCCCTATACTACAATACTAATGAGATATCACCCCAAAAACAACAAGGCAAATTGAAACTTTGATTTCCATCTACATTGCATCTACTTCATCGACAGTACAAGATAGTTCATTATTGCAGGTAACCCTTAGGGGGTGCTATGGGGTCTGTCTAAATGGGTCTCTACAGCTTGCTACTCACCATAAGATAATTATATTTGAGGTTCTGTGgtatcaaaacatcaaaaaaaaaaaaaaaaaaaaatgcaactgatGGTAGATGATCTAGAACTAGTAAACTAGCACTCCCataatatattgcataataCTAAGCTTTTTGCTTCCCATATAAGGGCTGCAAAAATGAGACTAAATAAAAGAATCATTTCCTGCTGTTTACAGAGCCTAGAGCTGTCAGAtgtgtgacatttaaaaacacctaTTTGAGTGATAATAGCAACATGCGTTTCATGTGTTGTATCAATCAGCATCCAGCATGAGTTAAGGaaagaaactgtaaaacatAGCTTATGGGGACATAAACAAGGCTTTAGGATTAGAGATCAGGAGAATATATGGTGAAGAAAAGACAACAGAAAAATAGGAaaagacatacagtatatatggaTCATTGGCATTCTACCTAtacatgatttgtttttctcagagGACGTTACAAAAGCTGAATAAAGGAAAACCACCTGGGTCATTCAAGCTGGAAGCTAAACTAGCAGCTGACCTCAAAAAACAGTAGAGATCGGCTGACAGAGCAGCTACGGACAAGATAAAAAGCAGAGAGGACAGCTACAGTCCTTACTTTAGGGCGTGCTTATTTTAGGGGGTAAAGGCCTTGTATCAAGGAGATGGTGGAAAAAGGGATCCAACAGCCATCATCAACAACCAGGGTCACGGGAGCCAGGACGAACGGCTAAATTTGAGACTCACCGTGATGAATGTCGGCCCACAGACTTGCTGTAGGTGTCATGGGAGTAAAGAACCACATCTGTAACCTGTAGCACTGAGAAAGAACAGTCTTCGTCGTCCTATCAGCACTAAAAAACTAATGACAACGAGGCGAAACCGGACCATCATGGGGCTGTCAGCAGAGGGATGAAGGGATCGAGGTATTTGGTGTCACGTCAAGGGATGCTACTATTAAAAGCCGGAATGAACACTACGGAAAGGTTGAGAAGGTCACAGGCCGCTCCGACTTTAAGCTATTAACACGGGTTGAGTAGCTCTCGAGTATCTGGCGGGGAAGGAGCAAAGCTTTTTAAAGTTTCCACGGGACTTCTGGCTCACAAGCGTGGCTTTAGCAGAGATAGGCCATCCCAAATCTAAAAACctgtaatcatttattcattctaagGGGTTTCAGACCTGTATggttttgaacacaaaagatattgtTGCCAACCAATTTTGGTTCCCCTTgacttttgttatatttttggcCATACAAACAAAGGAAATGGAAACCACAgtcgttcttcaaaatattgttCCAGAGAAAAACGTcggtttttaaatgtaatgacaattttcatttttgggtggactgtcCCCTTTAAACTCTAGAAATCTATTCAGACCACACATAAACCTTTGTGAGATGTGGCCGAGCAAGAAGAGGCGACCGAGGTCAAATCAGAAGCGGGACCCTTTAAACAGAATAGGAGAGGGAGAAAGGATAAAACGGAAGAGATGATGGAGggctgaaaaagagaaaaaggtgGAAATAGGGAcagagtagagagagagagagagagatggagaattTGGGACAGAGGGCTACTCACTCGGCTTCTACCTGAGCCACAGGACATTTGTACTGTGCGGTGCTGAACAAACAGATATCGGCATACTGTCGCACTGTGGGGAGAGAGCAGGGATACACAGAGGGGTTACCAGGGTCGGGAGGGAGCTTACACAAACCAAACACACAATTAAATCACAGGCGGGACAGCCGACATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78740 True 2253 lncRNA 0.42 2 14947805 14950634

Neighbor

gene id symbol gene type direction distance location
cd99l2 LOC107561982,LOC107678034,LOC107668267,LOC107750583 coding downstream 34628 14901499 ~ 14913177 (-)
dysf dysf,LOC107750586,LOC107749822 coding downstream 152867 14733180 ~ 14794938 (-)
nlgn2a nlgn2a,nlgn2,LOC107750775,LOC107753966,LOC107659731,LOC107564776,LOC103033407,LOC107664280 coding downstream 423235 14375050 ~ 14524570 (-)
LOC122348481 zmp:0000000699,LOC107750788,LOC107753995,LOC107659717,LOC107595334,LOC107560281,LOC107664269,LOC107753981,LOC107560280 coding downstream 580221 14360501 ~ 14367584 (-)
epoa LOC107753968,LOC107750777,LOC107659733,LOC107664284,LOC107595276,LOC107560292 coding downstream 588448 14344610 ~ 14359357 (-)
zgc:92664 LOC107561866,LOC107594707,LOC107750573,LOC107749790,LOC107678180,LOC107668195 coding upstream 40681 14991315 ~ 14994144 (-)
ache ache,LOC107750572,LOC107678131,LOC107561856,LOC107749789,LOC107668174,LOC107593784 coding upstream 43863 14994497 ~ 15004009 (-)
snapc2 LOC107666289,LOC107561849,LOC107750571 coding upstream 78459 15029093 ~ 15032128 (-)
trnal-aag_31 NA coding upstream 81988 15032622 ~ 15032703 (-)
ap1s1 ap1s1,LOC107666294,LOC105921790,LOC103148860,LOC107593725,LOC108443977,LOC103385557 coding upstream 143902 15094536 ~ 15102463 (-)
G53118 NA non-coding downstream 2790 14943010 ~ 14945015 (-)
G53091 NA non-coding downstream 26927 14839197 ~ 14920878 (-)
G53095 NA non-coding downstream 57155 14830971 ~ 14890650 (-)
G53099 LOC107677977,LOC107749821,LOC107750629,LOC107562020,LOC107668305,LOC107593888,LOC107750628 non-coding downstream 76865 14848567 ~ 14870940 (-)
G53000 NA non-coding downstream 377560 14569501 ~ 14570245 (-)
G53121 NA non-coding upstream 1558 14952192 ~ 14954572 (-)
G53276 LOC101886486,LOC101886504,LOC101886427 non-coding upstream 387442 15338076 ~ 15342768 (-)
G53307 NA non-coding upstream 549287 15499921 ~ 15503896 (-)
G53309 ext2,LOC107750554,LOC107586005,LOC107754691 non-coding upstream 558546 15509180 ~ 15509681 (-)
G53326 rps13,LOC107586033 non-coding upstream 658852 15609486 ~ 15611883 (-)
G52917 LOC105896813 other downstream 802525 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 857364 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 874106 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 879305 14065015 ~ 14068500 (-)
G52871 NA other downstream 1049482 13897496 ~ 13898323 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other upstream 23069 14973703 ~ 14975168 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 1609784 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 1931259 16881893 ~ 16934252 (-)
serf2b NA other upstream 2095810 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 3715639 18666273 ~ 18669833 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034742 NA non-coding NC_007118.7 CM002891.2 25988414 ~ 25995689 (-)