G53276 (LOC101886486,LOC101886504,LOC101886427)


Basic Information

Item Value
gene id G53276
gene name LOC101886486,LOC101886504,LOC101886427
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 15338076 ~ 15342768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU79031
CATTCAAAACGAAATCACATTGTTTGTCGGTCAAAAAAGTAGTGAGCCTTTCTGGATCGAGCTCCTGCAGTGCCAAGTTCAGTTCGTTCTTTGCACCTACGAAATTGGTACCTTGGTCACATCTGATCTGTCGTACTGTGCCTCGAATTGCGATAAAGCACCTTAGACTGTTAATAAACGCATCTGTGGACATATCTTCTAACATTTCTATATGAATAGCTCTTGAACACAGACATGTTAGAAGCAGACCATACCGTTTGTGATGTTTCCTTCCTTCTTTAGTCACAAAAGGACCAAAGCAGTCCATTCCACAATACATAAAAGGTGGAGAAGGCTCTACGCGTTCTGAGGGAAGATCGCTCATCCTTTGTCCTTCAGCAGGTCTTCTCAGTCTTCTACATGTTACACAGTTGCGAATGTAAGATGAGACCGCTCGATTTATTCCAGGTATCCAATAGCCACACGATCTGATTTCATTTGTTGTGAAACCCTTGCCTTgatgttttacagtttcatGACAGTGTGCTATTATCAACTTGGTTACATGATGCTCTTTAGGAAGGATTAGTGGATGCTTAAATGAGTCAGCGTCCGATGAGCGATTTAGTCTACCTCCCA
>TU79034
GTGTCACTCTGTGTGTCTAGTAAAGCATACACAAGCTGTTCAATGGATGGATTTTTAACTGACGACACCCATACCGGTACAATCATAGATGTAATGACTGACTGATCTTCACTGGTGATATTAAGTGACATAGCATTTGTAGTTTCACACTCAAGTGCATGTACATTGCTTACCATGGGCAATGGTCGTTCTCTGTTTCCGTCTTTGTCATAACTGTAATCATGAAGACATGTGGGATGTCGTAATTTGCATACATCACACGTGTGTCGATTTGCGACATTCCTTTGCACAGTGGCCTGGTTTTAAACACCCATAACAGAGTTTGTTATCTTTCACATAGGCCCTTCTGTCCTTTAAAGACCTCTCCATGAATTTCAGGCACTTATGAAGCTGATGTTTGTCATCTTCACACAACATGCACTGTGCTTTTAACTGTTCTTTAACTGCTGTttgtctgtcattgtttacaaTTGTTTCAGTCTTAAAGACAATTGCTTTGTTTCCTTTGATTTCCTTTGAGATCCTTCTGTCTTGAGGTAACTCACGAGAATGAAGAGCATGCAATGAAGTGATGGGATTACACATGATTTCTGCTTCTGCTGACATGAAATTGACAAAGTCATGAAAGCTTGGAAACTCCTTTCCATCCATGAGGGCTGTAGTGACCTGACGGTTCCATCTGGAAGCTGCCCAATCTGGAAGTTTCTGTATGAGCTTTTGGTTCTCTTCACAATCGTTTAATATTTCCAGACCTTTAACATGAGGTATGGCTTGCAAACAGGCATTAAGGAAGTCTGCAAATGTTCTCAGACTTTCTGCATCTTTGGATTGTATTTTCGGCCACTTGGAAAGTTTATCCCGAAACGCTCTTTGAATGACAAAGGGTTGGCCGTATCTTTGGTTTAGTTTGTCCCAAGCATCTTTATAGGCTTCTTCGTCATTTCGAAAAAAGGTGCCCTCAAGATATTTGTGTGCTGAGCCACtcacatacttttttaaataatagagtTTATCAGCTGCTGGGATGCCCTTTCTATCTATTAATGACATAAATGACGCTTTCCAGTTTACAAACTGAATTGGGTCTCCGCTGAACACTGCGGGTTCAGGTATGGGTAACCTGTTAATGGCTATACTGTCCTGAACTGCTTGAGCAAGATGAGTTACTTCACTTAGAGGTGTTGACTGTACAACATTGCTTTGCTGatgtaacattttgtttctCTGCTCTTCTTGTTTATTCTGTGTTGACTCACTTCTtgtctcttgttttatttcttcatcataGGATTTTACTCTGGCACGAGCAACTTCAATATCCTTTTCCACCTGCAGCCGTTCTAGCTCAAACTTTTGAGTTTCTAACTCTCTTCTGAGTTGCTCTTCTAAGGTTCTTATTCTCTCCTTTTGTTGTCTTTCCGTTTCCATCATCTTGTATTCAACCTCTTTTGCAGCCAGCTCTGCTGCAGCATCTGCACGTTTGCTTGCAG

Function

NR:

description
uncharacterized protein LOC101886486

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79031 False 618 lncRNA 0.42 1 15342151 15342768
TU79034 True 1490 lncRNA 0.41 1 15338076 15339565

Neighbor

gene id symbol gene type direction distance location
phf23b phf23,LOC107687030,LOC107687050,LOC107561685,LOC107593540 coding downstream 65746 15266887 ~ 15272330 (-)
plscr3b plscr3b,plscr3,LOC107593564,LOC107754701,LOC107687051,LOC107561702 coding downstream 76524 15253221 ~ 15261552 (-)
si:dkey-62k3.6 NA coding downstream 85335 15246148 ~ 15252741 (-)
senp3b senp3b,LOC107750558,LOC107704250,LOC107754702,LOC107561728,LOC107687035,LOC107593615 coding downstream 105090 15228441 ~ 15232986 (-)
eif4a1a eif4a1a,if4a1,eif4a1,LOC107687036,LOC107561738,LOC107704251,LOC107593628,LOC108443969,LOC105895537 coding downstream 110518 15221819 ~ 15227558 (-)
si:ch211-107p11.3 si:ch211-107p11.3,LOC107750654,LOC107586032,LOC107688174,LOC107754692 coding upstream 153104 15495872 ~ 15498178 (-)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107688160,LOC107750553,LOC107754690 coding upstream 190425 15533193 ~ 15554193 (-)
nucb2a nucb2a,LOC107688161,LOC107585938,LOC107750551,LOC107754687,LOC107593409 coding upstream 261060 15603828 ~ 15608445 (-)
calca calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683 coding upstream 616601 15959369 ~ 15969444 (-)
pde3b pde3b,LOC107688169,LOC107754680,LOC107750617,LOC107700615 coding upstream 630432 15973200 ~ 16015556 (-)
G53121 NA non-coding downstream 383504 14952192 ~ 14954572 (-)
G53119 NA non-coding downstream 387442 14947805 ~ 14950634 (-)
G53118 NA non-coding downstream 393061 14943010 ~ 14945015 (-)
G53091 NA non-coding downstream 417198 14839197 ~ 14920878 (-)
G53095 NA non-coding downstream 447426 14830971 ~ 14890650 (-)
G53307 NA non-coding upstream 157153 15499921 ~ 15503896 (-)
G53309 ext2,LOC107750554,LOC107586005,LOC107754691 non-coding upstream 166412 15509180 ~ 15509681 (-)
G53326 rps13,LOC107586033 non-coding upstream 266718 15609486 ~ 15611883 (-)
G53338 NA non-coding upstream 342863 15685631 ~ 15686068 (-)
G53353 NA non-coding upstream 464990 15807758 ~ 15850255 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 362908 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 1192796 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 1247635 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 1264377 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 1269576 14065015 ~ 14068500 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 1217650 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 1539125 16881893 ~ 16934252 (-)
serf2b NA other upstream 1703676 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 3323505 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 3399392 18742160 ~ 18794207 (-)

Expression


Co-expression Network