G53797 (tpm1,LOC103462590)


Basic Information

Item Value
gene id G53797
gene name tpm1,LOC103462590
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 16881893 ~ 16934252 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU79778
AAGTTTGCAAatgtggcattttaaaataaatttatttttatttaatttgttgcaAAAGaagtaaacatttatatttgtgacCTGAGGGTTGCACATTGCCTGTATATtagaaatgccatttttttaaaaaatgtgataaacACGGACTGATAGTTTTATAATTGTCTAATTCAGATAATTaatctagaaatattttttccgATTTTAAAAGGACTACTGACATAAGTAAATATCGTCTACTCCTACAACACAACTCACCTTTGGTAATGATCCAAGGTGTGTTATATAATGCAGAAGGcactttttctttacataaaatGGCTGTTCACAATTTAAAGGAAACATGGTTTCCatgatttttcacatttataatgAAAGCTTTAACTTTTGTGACTCTCGAAGATGCAACCCATACACAGTACATccacacattttataatatacctCTAGCCTTGGCATAAAAAAGCTCAAGATCCACAGCATCAGTAGTAacagaaaaattaaattgtgtattATCTGTCATCATAGATTATTGGTTACTCTGTGTGCAACACAAATGAATAGACTGTGTTCATATTCGGTGTATGCCCTGTTTTGTCTCACTCTGTTAAAATTCATTGAGTGCTAAACTGAGCTCATGTGAAAGGACCCGGTTTTTCTGGAACTGCTGATAGAAGGAGTCTGaagagaagagaagagaagagtgAAGATTAAAGGAGAAATGTTAGTTCCAAAAGCATTTACCCAATATGGTTTGCTTAAGtttatgctaaaatatatatttttttatccaatATTTACAATGTCACAGAACCTGTGCTGTAAAATGTGATGGAATGAATAGGAGAATTACAGCTGTGCATGAGCTGCCAAAGAGAGAAGCAACATGAGGTGATGAGAAGGAGCTTTTTTTGGACTTTATTCAAGCTTCTCGACAATAAATTAAGGACATATGAAATCAAAAGAGATAAGACATACTAAAGAGAGAAAGGAGTGGGGAGCTTACAGAGATGGGAggaagttttattttacagaaagcaaaaaatttctgtACAAGTGATGGGACTATAGAACTGAGAACTCCATCCCCACTGAGAATAGTGTGGTGGAGAAAAGCGGCAACAGAAAAATAGAGAAACACAGAGGAAATGAAGGAGTTGCCACTCAGATGGTGCCCGGAGCCAGAGATGAGatgtaaaaaatttaaTGGAGGTCATGTCGTTGAGAGCGTGGTCCAGCTCCTCGCTGATGGCTTTGTACTTGAGTTTCTGAGCATACAATTCATCTAAAGTAGCCAATTAAAGGCCAGAATAGTAGAGGGGTGTTGAGTGGAGAGGAATGGAAAAGAATGGAGAAACGAGAAAATAAGGGAAAGGAAGCAACGCAAAGGCGGACCGAACAATGACAAGttgcagaaaaagagaaacaggtAAAAGAAACGGCTAGGGAAACAATAATTcaacagaaatgaaatgaaatgaagtgaAATGACCTTTCTTAATCTACATATCCTTTAATTCACTATGTGAACTGTTTACCGTAGCAGACAAACAAACCTAAACCTGATATTCCAAGGATGTGTCTTTGTAACTTTAAGGATTTAACCCGTGTCTAATAGCAACAGTGAGGTACAAGTTGACATACCCTCCAGATCATCAATGGTCTTCTCAAGCTTGGCGACTGATCTCTCAGCGAACTCAGCACGAGTCTCAGCCTCTTCAGCTTGTCGGTCAAGACCTTGATCTCCTCCTCATATTTGTCCTCTTTAGCGGAGTACTGCAGCCTGGGCTTCCAGGGACTTCATGTTGTTGGTCACAGTTTTCAACTCCTCCTCCAGCTCAGAGCACTTGCTATAGGTGGGAGTGACAG
>TU79779
AAGTTTGCAAatgtggcattttaaaataaatttatttttatttaatttgttgcaAAAGaagtaaacatttatatttgtgacCTGAGGGTTGCACATTGCCTGTATATtagaaatgccatttttttaaaaaatgtgataaacACGGACTGATAGTTTTATAATTGTCTAATTCAGATAATTaatctagaaatattttttccgATTTTAAAAGGACTACTGACATAAGTAAATATCGTCTACTCCTACAACACAACTCACCTTTGGTAATGATCCAAGGTGTGTTATATAATGCAGAAGGcactttttctttacataaaatGGCTGTTCACAATTTAAAGGAAACATGGTTTCCatgatttttcacatttataatgAAAGCTTTAACTTTTGTGACTCTCGAAGATGCAACCCATACACAGTACATccacacattttataatatacctCTAGCCTTGGCATAAAAAAGCTCAAGATCCACAGCATCAGTAGTAacagaaaaattaaattgtgtattATCTGTCATCATAGATTATTGGTTACTCTGTGTGCAACACAAATGAATAGACTGTGTTCATATTCGGTGTATGCCCTGTTTTGTCTCACTCTGTTAAAATTCATTGAGTGCTAAACTGAGCTCATGTGAAAGGACCCGGTTTTTCTGGAACTGCTGATAGAAGGAGTCTGgtgagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagtgAAGATTAAAGGAGAAATGTTAGTTCCAAAAGCATTTACCCAATATGGTTTGCTTAAGtttatgctaaaatatatatttttttatccaatATTTACAATGTCACAGAACCTGTGCTGTAAAATGTGATGGAATGAATAGGAGAATTACAGCTGTGCATGAGCTGCCAAAGAGAGAAGCAACATGAGGTGATGAGAAGGAGCTTTTTTTGGACTTTATTCAAGCTTCTCGACAATAAATTAAGGACATATGAAATCAAAAGAGATAAGACATACTAAAGAGAGAAAGGAGTGGGGAGCTTACAGAGATGGGAggaagttttattttacagaaagcaaaaaatttctgtACAAGTGATGGGACTATAGAACTGAGAACTCCATCCCCACTGAGAATAGTGTGGTGGAGAAAAGCGGCAACAGAAAAATAGAGAAACACAGAGGAAATGAAGGAGTTGCCACTCAGATGGTGCCCGGAGCCAGAGATGAGatgtaaaaaatttaactgtgcaaggggagaaaaaaaaaaagaatttttgaAAGAGGAAAGtgatattaaacaataaaagacaTGCAGACTTATAAAAAGACTGTCAGtgttacataaatacacatatatttggTTCATGCATGTAAAATGATTACATCAGGCATAttgagattatttttttattaacagagaAATAATTTAGCAagttgcaaaaaatgtaaacataatgtttacatttacaaattagttgaaataaatcagaaatgaaaaaagagatGGTTTAAAACAAACGGATGGTGATATCAAACAGCAAAAGGCATGccagagattaaaaaaagaatatcaaCATGCATTCCAGATGAAagtgtgtgtaatttttgtgtAGTCTCATTTTTTTACACAACTTTATACCAAGTAAATCAATAGAAGGGTTTATGTCAAGCATGCTTTTAACCACTGGGTTCAGTCTAAAATCCTTCATCAAACCTGAAAATAAGATTATACTAGCACACAGAGAAACTGGAGAAGCCATTAAACCAAACATGTATGCACACTCACATACATGAACACGAGTAACATGTGGTGATATTTACATGGAGGTCATGTCGTTGAGAGCGTGGTCCAGCTCCTCGCTGATGGCTTTGTACTTGAGTTTCTGAGCATACAATTCATCTAAAGTAGCCAATTAAAGGCCAGAATAGTAGAGGGGTGTTGAGTGGAGAGGAATGGAAAAGAATGGAGAAACGAGAAAATAAGGGAAAGGAAGCAACGCAAAGGCGGACCGAACAATGACAAGttgcagaaaaagagaaacaggtAAAAGAAACGGCTAGGGAAACAATAATTcaacagaaatgaaatgaaatgaagtgaAATGACCTTTCTTAATCTACATATCCTTTAATTCACTATGTGAACTGTTTACCGTAGCAGACAAACAAACCTAAACCTGATATTCCAAGGATGTGTCTTTGTAACTTTAAGGATTTAACCCGTGTCTAATAGCAACAGTGAGGTACAAGTTGACATACCCTCCAGATCATCAATGGTCTTCTCAAGCTTGGCGACTGATCTCTCAGCGAACTCAGCACGAGTCTCAGCCTCTTCAGCTTGTCGGTCAAGACCTTGATCTCCTCCTCATATTTGTCCTCTTTAGCGGAGTACTGCAGCCTGGGCTTCCAGGGACTTCATGTTGTTGGTCACAGTTTTCAACTCCTCCTCCAGCTCAGAGCACTTGCTATAGGTGGGAGTGACAG
>TU79782
CTCTCATTGAGCTCAGCACGCTCTTCAGTACGCTCCAGCTCACCCTCAACAATCACCAGCTTACGGGCACCTCCTCATACTTGCGGTCGGCCTCCTCAGCAATGTGCTTGGCCTCCTTCAACTGGATCTCCTGCAGCTCCATCTTCTCCTCATCCTTCAGGGCCCTGTTCTCAATGACCTTCTTCTCAGCCAGCTCCAGTTTCTCCTGAGCATCCTTCAGGGCTTCAGAGTATTTGTCCAACTCATCCTCGGTTGCCTTCAGCTTCTTCTGCAGGGCGACCAGGTCATCCTCACCTGCTTGCTTCTGTCCTCTGCTCCCTTCTTATCGGCCTCAGCCTGCTCTGCTCTGTCCAAGGCATTCTCCTTGTCGAGCTTGAGCATCTGCATCTTCTTCTTAATGGCATCCATGGCTGCGTTTGTGTATGGGTGGTAGCACCAAACACTGGACTGAGAGAGGCGATGAGCGTCTGTGCTGTACTGAACGCTGAGCTGGAGTGCGAGCTGGTCTCGCTGTAGCCTGTCAAATATGTGCCTTCACAGGAGCCTGAGAAGTTCCGCAAGACACCCAATACTTTTTTGGGAACGGCCCATAGCGGTTCCTCCTGCGTCGCGTCTTTTTTTAAGGATCTGGACGGCGATTCGCTGCCCTCAGACATTTGAC
>TU79785
gACCTCCTCATACTTGCGGTCGGCCTCCTCAGCAATGTGCTTGGCCTCCTTCAACTGGATCTCCTGCAGCTCCATCTTCTCCTCATCCTTCAGGGCCCTGTTCTCAATGACCTTCATCCTTCTTCTCAGCCAGCTCCAGTTTCTCCTGAGCATCCTTCAGGGCTTCAGAGTATTTGTCCAACTCATCCTCGGTTGCCTTCAGCTTCTGTCCTCTGCTCCCTTCTTATCGGCCTCAGCCTGCTCTGCTCTGTCCAAGGCATTCTCCTTGTCGAGCTTGAGCATCTGCATCTTCTTCTTAATGGCATCCATGGCTGCGTTTGTGTATGGGTGGTAGCACCAAACACTGGACTGAGAGAGGCGATGAGCGTCTGTGCTGTACTGAACGCTGAGCTGGAGTGCGAGCTGGTCTCGCTGTAGCCTGTCAAATATGTGCCTTCACAGGAGCCTGAGAAGTTCCGCAAGACACCCAATACTTTTTTGGGAACGGCCCATAGCGGTTCCTCCTGCGTCGCGTCTTTTTTTAAGGATCTGGACGGCGATTCGCTGCCCTCAGACATTTGAC
>TU79789
ctttttttttGAGCTTTTTTTGGACTTTATTCAAGCTTCTCGACAATAAATTAAGGACATATGAAATCAAAAGAGATAAGACATACTAAAGAGAGAAAGGAGTGGGGAGCTTACAGAGATGGGAggaagttttattttacagaaagcaaaaaatttctgtACAAGTGATGGGACTATAGAACTGAGAACTCCATCCCCACTGAGAATAGTGTGGTGGAGAAAAGCGGCAACAGAAAAATAGAGAAACACAGAGGAAATGAAGGAGTTGCCACTCAGATGGTGCCCGGAGCCAGAGATGAGatgtaaaaaaATTTACATGGAGGTCATGTCGTTGAGAGCGTGGTCCAGCTCCTCGCTGATGGCTTTGTACTTGAGTTTCTGAGCATACAATTCATCCCTCCAGATCATCAATGGTCTTCTCAAGCTTGGCGACTGATCTCTCAGCGAACTCAGCACGAGTCTCAGCCTCTTCAGCTTGTCGGTCAAGACCTTGATCTCCTCCTCATATTTGTCCTCTTTAGCGGAGTACTGCAGCCTGGGCTTCCAGGGACTTCATGTTGTTGGTCACAGTTTTCAACTCCTCCTCCAGCTCAGAGCACTTGCTATAGGTGGGAGTGACAG

Function

symbol description
tpm1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Predicted to be active in actin filament. Is expressed in adaxial cell; heart; and musculature system. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 3. Orthologous to human TPM1 (tropomyosin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79778 False 1869 lncRNA 0.38 5 16885819 16888528
TU79779 True 2508 lncRNA 0.36 3 16885819 16888528
TU79782 False 661 lncRNA 0.54 4 16881893 16885738
TU79785 False 562 TUCP 0.53 3 16881893 16885524
TU79789 False 621 lncRNA 0.44 6 16885819 16934252

Neighbor

gene id symbol gene type direction distance location
vps13c LOC107750513,LOC107667706,LOC107741405 coding downstream 48543 16788306 ~ 16833350 (-)
rorab LOC107741404,LOC107593086,LOC107750514,LOC107674456,LOC107585969,LOC107700416 coding downstream 95573 16753897 ~ 16786320 (-)
anxa2b anxa2b,LOC107674461,LOC107750515,LOC107586047,LOC107700383,LOC107594570,LOC107741438 coding downstream 130106 16747529 ~ 16751787 (-)
LOC122348245 LOC107674462,LOC107750606,LOC107586046,LOC107674463,LOC107586048,LOC107750516,LOC107758071,LOC107669867,LOC107554993 coding downstream 138846 16740444 ~ 16743047 (-)
gtf2a2 gtf2a2,LOC107674449,LOC107594597,LOC106531147 coding downstream 172188 16708096 ~ 16709705 (-)
tspan3b tspan3b,LOC107750509,LOC107585973,LOC107741410,LOC107594537,LOC107700387,LOC107670773,LOC108441846 coding upstream 8101 16942353 ~ 16947126 (-)
nmbb nmbb,LOC107750640,LOC107741440,LOC107700388,LOC107594526,LOC107670735,LOC107585974 coding upstream 14051 16948303 ~ 16949335 (-)
alpk3b LOC107670775,LOC107750508,LOC107586023,LOC108264806 coding upstream 22019 16956271 ~ 16967844 (-)
frmd5b frmd5,LOC107750639,LOC107586052,LOC107670731,LOC107700423,LOC107741413,LOC107593056,LOC108441847 coding upstream 35407 16969659 ~ 16987625 (-)
tmed3 tmed3,LOC107750507,LOC107741415,LOC107700389,LOC107585977,LOC108441851 coding upstream 54097 16988349 ~ 16990238 (-)
G53774 NA non-coding downstream 289928 16591682 ~ 16591965 (-)
G53773 NA non-coding downstream 290494 16590492 ~ 16591399 (-)
G53765 NA non-coding downstream 314333 16567157 ~ 16567560 (-)
G53764 NA non-coding downstream 314750 16566667 ~ 16567143 (-)
G53763 NA non-coding downstream 315575 16565617 ~ 16566318 (-)
G53849 NA non-coding upstream 64974 16999226 ~ 17005896 (-)
G53850 NA non-coding upstream 65508 16999760 ~ 17006682 (-)
G53854 NA non-coding upstream 77967 17012219 ~ 17012982 (-)
G53859 NA non-coding upstream 97257 17031509 ~ 17031790 (-)
G53884 lipc,lipca,LOC107670742 non-coding upstream 172630 17106882 ~ 17107447 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 317555 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 1906725 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 2736613 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 2791452 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 2808194 14069113 ~ 14073699 (-)
serf2b NA other upstream 112192 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 1732021 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 1807908 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 1912024 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 1975396 18909648 ~ 18914921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location