tmed3 (tmed3,LOC107750507,LOC107741415,LOC107700389,LOC107585977,LOC108441851)


Basic Information

Item Value
gene id tmed3
gene name tmed3,LOC107750507,LOC107741415,LOC107700389,LOC107585977,LOC108441851
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 16988349 ~ 16990238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243885.1
TCCTGCCACGTCAGTGGTGTTTAGCTTCAAGCTGTCAAGTGCCCGAGAAAGTTCAGCAAATCAGCTGAAACTCAATGGAAGAGGCTTTTTGCgaattttaaagaataattaaagTTTTCTTCCACGTGGGCACTATGAGATACccttttcttttaattctgGCTATGCATATAGCCTTTGCAAATGCCACCGAATTAACTTTTGAATTGCCCGATAACGAGAAACAATGCTTTTACGAGGACCTAGAGCAAGGAGCAAAGTTTGATATAGACTTTCAGGTTATTGCAGGAGGAAACTATGATGTTGACTGTTTTGTGACAGATCCACTGAATAACGTGTTGTATCAGGAACGAAAAAAGCAATATGACAGCTTTTCCCATACAACAACCATGAAGGGAGTCTACAAGGTTTGTTTTAGCAACGAGTTTTCAACCTTCTCTCATAAAACTGTTTACCTGGACTTCAGAAGTGGAGAGGATGACAGATTAATGCCAGACATGAACAGAGCGACAGCTCTCACAcagatGGAGTCAGCCTGCCTGTCTATCCATGAGATCCTGAAAGTGGTTTCAGATTCTCAGACTTGGTACCGTCTTCGGGAGGCTCAGGACCGAATCAGGGCTGAAGACCTGAACGAACGCATCCATTTTTGGTCTATCGGGGAGACCGTCATCCTGTTTGTGGTCTGTATTGGCCAGGTCCTTATGCTTAAGAGTTTCTTCAGTGAGAAGAAAGCAAATGTTGCCACCAGCACAtagatctattttttttttattctgccgCCTTTTTTCATTAATCAGTCTGATCTCCTTGAAACAACGTTGACTGATGCCTGCAACCAACCAAAAATGAGATCTGTGTCAAACAATGTGCCTTAATTTGGAATGATGTACTAAAACCTATGCGTGAGTTCATAATATTGTGCAGTATATTCAAATTGGCCTCTAAGTGCATTATTCACTACACCAGTAATGGAAATTGACCTGCTGCACCACAACGCTACCGcatcttaatgtttttttgtttgtaccAGTGGTGTTTTGTGAAATTTATGCTTTGTCGACTTTAAGTGTGTGCACATGGCAACTTAAAATGCATAGATCTTAACATATACGTTATgtagaaaagaaagaatagtTTTGGTGCTTTGTGTTTTGGTAATTATGATAATATGATAATGAATGAGTGTGTTGAACCTCTAGTTTTATGTTTAGCATAAAAGTTCTTCTTCGTTTATCTCACGTTCAAAAGGGAAAAATCCACggtaatttatatatgtatatctggcaaaatatgaaatgcttgttaaaattcattattttatagcCCCTTAATTGCGTATTCTGTCTAATTGTAAGTGCCAACCGCGCACACcactgctgatttttttttttttcccatttcttAAGTTACTTTATATGGAACTGGTTTATGGATATGGAGCAAGGGCTTGCACTTTTTTTGGACTGTAACTGAAACATCAATTTAATGTGGAATTCAAAagctgttttataaatgtattacatgtttttttggaTATTTGTTACAAACTAGTTTCATTTTGAATACCTCAGCACAGGATGTTAAATCGATTTGtgacatttattgatttattatgaaatgaataCCATAAATTGTGTTGTTTACATTGTGTTTGCCTTGggttaattaactaattaaaacaaagttttgAATTGA

Function

symbol description
tmed3 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED3 (transmembrane p24 trafficking protein 3).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 3

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243885.1 True 1698 mRNA 0.37 3 16988349 16990238

Neighbor

gene id symbol gene type direction distance location
frmd5b frmd5,LOC107750639,LOC107586052,LOC107670731,LOC107700423,LOC107741413,LOC107593056,LOC108441847 coding downstream 724 16969659 ~ 16987625 (-)
alpk3b LOC107670775,LOC107750508,LOC107586023,LOC108264806 coding downstream 20505 16956271 ~ 16967844 (-)
nmbb nmbb,LOC107750640,LOC107741440,LOC107700388,LOC107594526,LOC107670735,LOC107585974 coding downstream 39014 16948303 ~ 16949335 (-)
tspan3b tspan3b,LOC107750509,LOC107585973,LOC107741410,LOC107594537,LOC107700387,LOC107670773,LOC108441846 coding downstream 41223 16942353 ~ 16947126 (-)
vps13c LOC107750513,LOC107667706,LOC107741405 coding downstream 154999 16788306 ~ 16833350 (-)
znf710b znf710b,LOC107585980,LOC107670757,LOC107750504,LOC107741417,LOC107700425,LOC107593042 coding upstream 26505 17016743 ~ 17027779 (-)
harbi2 zgc:162945,LOC107586056,LOC107750502,LOC107670729,LOC107750603,LOC107741428 coding upstream 53660 17043898 ~ 17046378 (-)
aldh1a2 aldh1a2,LOC107670770,LOC107585984,LOC107700428,LOC107593009,LOC107750602 coding upstream 80954 17071192 ~ 17093116 (-)
adam10a LOC107750500,LOC107670741,LOC107700430,LOC107741424,LOC107585986 coding upstream 124556 17114794 ~ 17157406 (-)
sltm LOC107670749,LOC107700432,LOC107750497,LOC107731800 coding upstream 191774 17182012 ~ 17193283 (-)
LOC122348047 NA non-coding downstream 57018 16926570 ~ 16931331 (-)
G53774 NA non-coding downstream 396384 16591682 ~ 16591965 (-)
G53773 NA non-coding downstream 396950 16590492 ~ 16591399 (-)
G53765 NA non-coding downstream 420789 16567157 ~ 16567560 (-)
G53764 NA non-coding downstream 421206 16566667 ~ 16567143 (-)
G53849 NA non-coding upstream 8988 16999226 ~ 17005896 (-)
G53850 NA non-coding upstream 9522 16999760 ~ 17006682 (-)
G53854 NA non-coding upstream 21981 17012219 ~ 17012982 (-)
G53859 NA non-coding upstream 41271 17031509 ~ 17031790 (-)
G53884 lipc,lipca,LOC107670742 non-coding upstream 116644 17106882 ~ 17107447 (-)
G53797 tpm1,LOC103462590 other downstream 54097 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 424011 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 2013181 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 2843069 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 2897908 14075543 ~ 14090441 (-)
serf2b NA other upstream 56206 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 1676035 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 1751922 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 1856038 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 1919410 18909648 ~ 18914921 (-)

Expression


Co-expression Network