rorab (LOC107741404,LOC107593086,LOC107750514,LOC107674456,LOC107585969,LOC107700416)


Basic Information

Item Value
gene id rorab
gene name LOC107741404,LOC107593086,LOC107750514,LOC107674456,LOC107585969,LOC107700416
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 16753897 ~ 16786320 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244319.1
GCGTGACCGTGTCTCGCGCTCAACAGCGCTGTCTGTGGACAGAAGGGCCACACCCGCTCCCATGAACACTAACAGATCTGTCACACGCTCAGGTGCAATCCGCACCAAAAGACGATGTAAAACGAACCCGAGCTTTTTGACAAAGCGATCCCGTTGTATCAGTGACTGAACCCCGCAGATGAACATGGAGTCTCCGCCAGAGTCCGTCGCGTCGCCGCGGAAGAGCGCTTCTGAAGCGGACGCTTCGGTGGAGGACAGCCCGGTGAAACTGGACAGCAAGGCTGAGCCCGACAAACCAGCACCAGTTCGGCGGCACAGTTGCTCAAGTACCAACAAGGATGTGTCCTCGGCAAAGAAAACGCACACGTCTCAGATTGAGAGTATTCCCTGTAAAATCTGTGGAGATAAATCATCAGGGATTCATTATGGTGTTATCACGTGTGAGGGATGCAAGggTTTCTTCAGGAGGAGTCAGCAGGGCACTGTGTCATATTCATGTCCTCGGCAGAAGAGTTGTCTGATCGACCGTACCAGCAGAAACCGCTGCCAGCACTGTCGCCTGCAGAAATGCTTAGCAGTGGGCATGTCAAGAGATGCTGTGAAATTTGGCCGGATGTCCAAGAAGCAGAGGGACAGCCTGTTCGCAGAGGTTCAGAAACACCGTCAACAGCAGCAGGAGGAGAAAGTGAGTGATGACACAGAGAAGGGGCGGGAACCTCAACCTCCAGGAGAGGCAGAGCCACTCACGCCCTCTTACGCCCTGTCCACCAATGGCGTCACAGAACTCCCAGATGACCTCAGTGGATACGTGAATGGTCAGACCCCAGAGGAGGGAAAGGCAGATTCAGCGATTGGTGGATTTTACCTAGACATTCAGCCCTCTCCAGACCAGTCAGGTCTAGACATGGATGGCATTAAACTAGAACCTGTGTGCGACCTCAGCTCGGACTCTGGCTTAGATCAATATTGTTGCTATAGCAATGGAGACTCTTCACCTCCTGACAATGACCTAgAACATATGTCAGAGAACATCTGCAAGTCTCACATGGAGACGTGCCAGTATCTTCGAGAAGAGCTTCAGCCCAGCAACTGGCAGACAGTCTTACAGACCGACCTGGACGCGTACCAAAAGAAGTCTCAGGAGGACATGTGGCAGCTGTGTGCGGTTAAAGTCACTGAAGCCGTGCAGTATGTGGTTGAGTTTGCCAAGCGCATTGATGGATTCATGGAGCTCTGTCAGAACGATCAGATCGTGCTGCTCAAAGCAGGATCTTTAGAAGTAGTGTTCGTGAGGATGTGTCGGGCATATAACTCCCAGAACAACACTGTCTTTTTTGACAGCAAATACGCTGGGCCGGAGGTCTTTAAAGCATTGGGCTGTGATGATCTTATCAGCTCCGTGTTTGAGTTTGCGAAGAGCCTGAACTCTCTACAGCTCAGCGAAGATGAGATCGGCCTGTTTTCAGCATATGTGCTGATGTCTGCAGatcgCTCCTGGCTGCAGGAGAAGAGCAGAGTGGAGAAACTCCAGGAGAAGATCAAGATTGCCCTCCAGAACCTCCTGCAGAAGAACCAGAGGGATGAGGGAATTCTCGCAAAGCTTGTCTGTAAAGTGTCCACTGTTCGGATGTTATGCCGTCGCCATATGGAAAAACTGAGCACGTTCAGAGCTCTTTACCCAGAAACGGTCCACACACGCTTCCCTCCTCTCTATAAGGAGCTGTTTGGCTCAGACTTTGAGCAGGTTCTGCCTCAGGAGGCCTGATAGAGACTTATCCTAATACTGCAcagattcaaaaaaaaaaagagacggATAGAGACAGATAATACTAACATGCTGACAAGAACTCTAAGCTCACTTCAGCCTCAGTTCATGTACACTTCATTCTCACAAAGCACTTCTCAGAGTCCAGCCCCATCGACCGTGCACCAGGAGTCTGGCGGTCTTTTAGAAGAGGAAACTTCagatgcaagaaaaaaaaaaaactggtgaTGTCTTGTAATGCGCATCAGAGCATTCCTCCATGCCACAGCTTTATCTTTCAGCCTCCTGTTCTGACTGCATGAGATCTCAGCGGAAACGCCCACTGCATATGACCGCCCCAGCATCGCCCTCTACTGGCCGTAGACAGTAACGAGATGTCTGGCTGGGGTAGACGAAGACAGGAAATGAACGTCTGGAGCTGAAATccctgtctttttttctccgGTGCCACAATGAACAGCCCACGTTGGTGCTAACGTCACAGCACTGCCCTTTACTGACCTCTTCCAGTATACTCACATTCAGCAGGGACATCATTTGGCGAAACCACTGCCCCAGCCCCAGGAGAAGACAGTGGACGAAGCATGACATGGGACTCAAACTGTGAGACCCGAATTACTATCGTACCGAAACTTTCACGATCAAACGTCATGTTCTGAGGCAGTGAGCTCAAATACGTCGATATATTCTTGTTATATGGTTAGTTAAATCATGCAATGTATGATGTGTAGAACCTAACGAAAGGTAGCACTTTGTGTTTTTCCCAGCAATAAACGATTTCAAGTtaatttgtggaaaaaaaaaaaaaaatctgaaggaATATGCTGTTATGTTAGATCTGGTGAGATCTGAAATACTTGTGTTTTGTTAAATCTCTGTCTTTTAAAGCCAGCTCGCATTGTCTAGACGGTGGTGTGAAGCCCTGTTGTGCCATAGTGATTCTGTGATTAGATTTCCGTCAAAGTGAGCCGAGTGGAGCGATGATTGACAGATGAGGGGCATGTGTTGACATTCCAGGGGATCTAGCGGTTCGTATTAAATGTCATGGGGATTTGAGGCAGTTGGCGTTGTTCCTAACTGACCCTTTTTGAGATAACGTCTAGGCGTTTTTTTTGCACCTAGTAATGCAGCTCATCAGGGAAGAGGAGAGAATAAAAATGgtcacttatttttttctttctttactttgcAGCTGTGTACACAggcttgttttttaaaagatgttgGATCTTTGTGTCAATAGTTTTGTGCCCCTTCAACACACGCGTCTGAACCAAATTGAATGCATTTAGCACGCAGCCTACAAACAAGGACAAGCAATAACCTTAGTAAAGATGTTCCGATCTGACATctctgtttaatgttttttgtaaggGCTGGCACTGCTTTACCTGTAGTATTGTTCATATCTGTTCCGTGAAAGACAATCCATCAAATATCTGACCTCATAAAAGGGTATTTTGGGACTGCTCAGGGAAACTATTGTTTTATAGTTGAGGAGGAGAGTGAACTTGTCCATAACTGCAAGGGGACGGCGTTATAGCACAGTCGTTTGAAAAACAATGTGTAAAAAGtagtgaaatattatgaaattgTCCTCTTCGTGAATCAGGGTCAGGTGTGCAAATGAAGAATCATCCAAAATAATACTGAGCAGAAAGCAATAATAACGGCATAATcatgttttgaaaacaaaaattgcatGCAAATGCTTTAAATGCAGAACTTTGTCAcgtgtttttgtttggtttgaaaTTCGCTTGGTTTGGCCTCTCCCGCGTCCTGATGTCTTCGGCCCCTTCCCATTTCTTTAGAGACCTGATTTGGCCTGTGTATTCTCTGTGAATATCTTTTTAGCAATCCCCAGTCCCACCGTTTGTGCTGGTTCTATCAAACTTTTTGGTTGGCTATTAAAGAAGTATTATGGCACTTAAATGGTTAGCAAATTAATTTCTTACACTCTCATCAGTTAAACGCATTGATTTCTGATCTAATCGAGGTTCAGTATGAATTctagctgtttattattatgacatGTGTAACGTGTGGTGTTATCCGTGTGCTAGTCCAGAGGCCTGGaatgttctttctttcatttgccAATTATTCTTTAATTATGTCCATCACTAAGGCAGTATTGTATTTTTCTCTTGCTTTGGTTTTGGGGCATGAGTACTTAATCTTTCTATGTATATGTTAAGACGAGTATCACAGTAACACAGTCCCTTTTAAGGTTGTCATATTTTCACTGACAAATGACCAAATGTTTTGTATGATATACACAccataatatgctaatttgtgAGTAATGCTAATCATTTGAGTGGATCACCGTTTGTACTGAAGAAAAACGTCCTTTTGTTTTGAAGACGTGGGTTTTTcctctgtatatttttttccatcctTCATTTTTAACAGATTAACCAGTGGTCTCCCTTTGATTTAATCCACAAGCACTCTTCAACTAGTTCTCCAGTAGATCTGTAGAAATAGTCCATTTCTTCCAATTCGTTCTATTTGAGATattttgcctttgttttgtatatacacctgtacaaaaatgcaaaagtattgtttctttgaaatacagttttcatctaatgttgtgatttttgtatttagaGGTTTAACCCcctaaattacttttattaaagaCGCATGTCACACATTGACAAATAGTGTGTTGAACGTgctgatgacaataaaaaaatcccaCAGCTTGTGATGAAAA
>XM_043244321.1
CACATGGATTCTCATGCGGTAGAGACGAGAGGCACAGCAGCGCTCCCGTCAGTCAGCAGCACAACGCTTGCGTCCCAGCCTGCACATGCTCTTGAGACAAGGCTGTTGACGGTCCTCAGCCCGGCCACAGAGCCTCAGGATGTACTTAATGATCACAGCCATGAAAGCTCAGATTGAGAGTATTCCCTGTAAAATCTGTGGAGATAAATCATCAGGGATTCATTATGGTGTTATCACGTGTGAGGGATGCAAGggTTTCTTCAGGAGGAGTCAGCAGGGCACTGTGTCATATTCATGTCCTCGGCAGAAGAGTTGTCTGATCGACCGTACCAGCAGAAACCGCTGCCAGCACTGTCGCCTGCAGAAATGCTTAGCAGTGGGCATGTCAAGAGATGCTGTGAAATTTGGCCGGATGTCCAAGAAGCAGAGGGACAGCCTGTTCGCAGAGGTTCAGAAACACCGTCAACAGCAGCAGGAGGAGAAAGTGAGTGATGACACAGAGAAGGGGCGGGAACCTCAACCTCCAGGAGAGGCAGAGCCACTCACGCCCTCTTACGCCCTGTCCACCAATGGCGTCACAGAACTCCCAGATGACCTCAGTGGATACGTGAATGGTCAGACCCCAGAGGAGGGAAAGGCAGATTCAGCGATTGGTGGATTTTACCTAGACATTCAGCCCTCTCCAGACCAGTCAGGTCTAGACATGGATGGCATTAAACTAGAACCTGTGTGCGACCTCAGCTCGGACTCTGGCTTAGATCAATATTGTTGCTATAGCAATGGAGACTCTTCACCTCCTGACAATGACCTAgAACATATGTCAGAGAACATCTGCAAGTCTCACATGGAGACGTGCCAGTATCTTCGAGAAGAGCTTCAGCCCAGCAACTGGCAGACAGTCTTACAGACCGACCTGGACGCGTACCAAAAGAAGTCTCAGGAGGACATGTGGCAGCTGTGTGCGGTTAAAGTCACTGAAGCCGTGCAGTATGTGGTTGAGTTTGCCAAGCGCATTGATGGATTCATGGAGCTCTGTCAGAACGATCAGATCGTGCTGCTCAAAGCAGGATCTTTAGAAGTAGTGTTCGTGAGGATGTGTCGGGCATATAACTCCCAGAACAACACTGTCTTTTTTGACAGCAAATACGCTGGGCCGGAGGTCTTTAAAGCATTGGGCTGTGATGATCTTATCAGCTCCGTGTTTGAGTTTGCGAAGAGCCTGAACTCTCTACAGCTCAGCGAAGATGAGATCGGCCTGTTTTCAGCATATGTGCTGATGTCTGCAGatcgCTCCTGGCTGCAGGAGAAGAGCAGAGTGGAGAAACTCCAGGAGAAGATCAAGATTGCCCTCCAGAACCTCCTGCAGAAGAACCAGAGGGATGAGGGAATTCTCGCAAAGCTTGTCTGTAAAGTGTCCACTGTTCGGATGTTATGCCGTCGCCATATGGAAAAACTGAGCACGTTCAGAGCTCTTTACCCAGAAACGGTCCACACACGCTTCCCTCCTCTCTATAAGGAGCTGTTTGGCTCAGACTTTGAGCAGGTTCTGCCTCAGGAGGCCTGATAGAGACTTATCCTAATACTGCAcagattcaaaaaaaaaaagagacggATAGAGACAGATAATACTAACATGCTGACAAGAACTCTAAGCTCACTTCAGCCTCAGTTCATGTACACTTCATTCTCACAAAGCACTTCTCAGAGTCCAGCCCCATCGACCGTGCACCAGGAGTCTGGCGGTCTTTTAGAAGAGGAAACTTCagatgcaagaaaaaaaaaaaactggtgaTGTCTTGTAATGCGCATCAGAGCATTCCTCCATGCCACAGCTTTATCTTTCAGCCTCCTGTTCTGACTGCATGAGATCTCAGCGGAAACGCCCACTGCATATGACCGCCCCAGCATCGCCCTCTACTGGCCGTAGACAGTAACGAGATGTCTGGCTGGGGTAGACGAAGACAGGAAATGAACGTCTGGAGCTGAAATccctgtctttttttctccgGTGCCACAATGAACAGCCCACGTTGGTGCTAACGTCACAGCACTGCCCTTTACTGACCTCTTCCAGTATACTCACATTCAGCAGGGACATCATTTGGCGAAACCACTGCCCCAGCCCCAGGAGAAGACAGTGGACGAAGCATGACATGGGACTCAAACTGTGAGACCCGAATTACTATCGTACCGAAACTTTCACGATCAAACGTCATGTTCTGAGGCAGTGAGCTCAAATACGTCGATATATTCTTGTTATATGGTTAGTTAAATCATGCAATGTATGATGTGTAGAACCTAACGAAAGGTAGCACTTTGTGTTTTTCCCAGCAATAAACGATTTCAAGTtaatttgtggaaaaaaaaaaaaaaatctgaaggaATATGCTGTTATGTTAGATCTGGTGAGATCTGAAATACTTGTGTTTTGTTAAATCTCTGTCTTTTAAAGCCAGCTCGCATTGTCTAGACGGTGGTGTGAAGCCCTGTTGTGCCATAGTGATTCTGTGATTAGATTTCCGTCAAAGTGAGCCGAGTGGAGCGATGATTGACAGATGAGGGGCATGTGTTGACATTCCAGGGGATCTAGCGGTTCGTATTAAATGTCATGGGGATTTGAGGCAGTTGGCGTTGTTCCTAACTGACCCTTTTTGAGATAACGTCTAGGCGTTTTTTTTGCACCTAGTAATGCAGCTCATCAGGGAAGAGGAGAGAATAAAAATGgtcacttatttttttctttctttactttgcAGCTGTGTACACAggcttgttttttaaaagatgttgGATCTTTGTGTCAATAGTTTTGTGCCCCTTCAACACACGCGTCTGAACCAAATTGAATGCATTTAGCACGCAGCCTACAAACAAGGACAAGCAATAACCTTAGTAAAGATGTTCCGATCTGACATctctgtttaatgttttttgtaaggGCTGGCACTGCTTTACCTGTAGTATTGTTCATATCTGTTCCGTGAAAGACAATCCATCAAATATCTGACCTCATAAAAGGGTATTTTGGGACTGCTCAGGGAAACTATTGTTTTATAGTTGAGGAGGAGAGTGAACTTGTCCATAACTGCAAGGGGACGGCGTTATAGCACAGTCGTTTGAAAAACAATGTGTAAAAAGtagtgaaatattatgaaattgTCCTCTTCGTGAATCAGGGTCAGGTGTGCAAATGAAGAATCATCCAAAATAATACTGAGCAGAAAGCAATAATAACGGCATAATcatgttttgaaaacaaaaattgcatGCAAATGCTTTAAATGCAGAACTTTGTCAcgtgtttttgtttggtttgaaaTTCGCTTGGTTTGGCCTCTCCCGCGTCCTGATGTCTTCGGCCCCTTCCCATTTCTTTAGAGACCTGATTTGGCCTGTGTATTCTCTGTGAATATCTTTTTAGCAATCCCCAGTCCCACCGTTTGTGCTGGTTCTATCAAACTTTTTGGTTGGCTATTAAAGAAGTATTATGGCACTTAAATGGTTAGCAAATTAATTTCTTACACTCTCATCAGTTAAACGCATTGATTTCTGATCTAATCGAGGTTCAGTATGAATTctagctgtttattattatgacatGTGTAACGTGTGGTGTTATCCGTGTGCTAGTCCAGAGGCCTGGaatgttctttctttcatttgccAATTATTCTTTAATTATGTCCATCACTAAGGCAGTATTGTATTTTTCTCTTGCTTTGGTTTTGGGGCATGAGTACTTAATCTTTCTATGTATATGTTAAGACGAGTATCACAGTAACACAGTCCCTTTTAAGGTTGTCATATTTTCACTGACAAATGACCAAATGTTTTGTATGATATACACAccataatatgctaatttgtgAGTAATGCTAATCATTTGAGTGGATCACCGTTTGTACTGAAGAAAAACGTCCTTTTGTTTTGAAGACGTGGGTTTTTcctctgtatatttttttccatcctTCATTTTTAACAGATTAACCAGTGGTCTCCCTTTGATTTAATCCACAAGCACTCTTCAACTAGTTCTCCAGTAGATCTGTAGAAATAGTCCATTTCTTCCAATTCGTTCTATTTGAGATattttgcctttgttttgtatatacacctgtacaaaaatgcaaaagtattgtttctttgaaatacagttttcatctaatgttgtgatttttgtatttagaGGTTTAACCCcctaaattacttttattaaagaCGCATGTCACACATTGACAAATAGTGTGTTGAACGTgctgatgacaataaaaaaatcccaCAGCTTGTGATGAAAA

Function

NR:

description
PREDICTED: nuclear receptor ROR-alpha-like isoform X1

GO: NA

KEGG:

id description
K14033 NR1F4; nuclear receptor subfamily 1 group F member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244319.1 True 4496 mRNA 0.44 11 16753897 16786320
XM_043244321.1 False 4295 mRNA 0.44 10 16753897 16765586

Neighbor

gene id symbol gene type direction distance location
anxa2b anxa2b,LOC107674461,LOC107750515,LOC107586047,LOC107700383,LOC107594570,LOC107741438 coding downstream 2110 16747529 ~ 16751787 (-)
LOC122348245 LOC107674462,LOC107750606,LOC107586046,LOC107674463,LOC107586048,LOC107750516,LOC107758071,LOC107669867,LOC107554993 coding downstream 10850 16740444 ~ 16743047 (-)
gtf2a2 gtf2a2,LOC107674449,LOC107594597,LOC106531147 coding downstream 44192 16708096 ~ 16709705 (-)
LOC122347927 LOC107750517,LOC107585966,LOC107593117 coding downstream 46553 16702001 ~ 16707344 (-)
trpm1a trpm1a,LOC107750517,LOC107585966,LOC107593117 coding downstream 51570 16690750 ~ 16702327 (-)
vps13c LOC107750513,LOC107667706,LOC107741405 coding upstream 1986 16788306 ~ 16833350 (-)
tspan3b tspan3b,LOC107750509,LOC107585973,LOC107741410,LOC107594537,LOC107700387,LOC107670773,LOC108441846 coding upstream 156033 16942353 ~ 16947126 (-)
nmbb nmbb,LOC107750640,LOC107741440,LOC107700388,LOC107594526,LOC107670735,LOC107585974 coding upstream 161983 16948303 ~ 16949335 (-)
alpk3b LOC107670775,LOC107750508,LOC107586023,LOC108264806 coding upstream 169951 16956271 ~ 16967844 (-)
frmd5b frmd5,LOC107750639,LOC107586052,LOC107670731,LOC107700423,LOC107741413,LOC107593056,LOC108441847 coding upstream 183339 16969659 ~ 16987625 (-)
G53774 NA non-coding downstream 161932 16591682 ~ 16591965 (-)
G53773 NA non-coding downstream 162498 16590492 ~ 16591399 (-)
G53765 NA non-coding downstream 186337 16567157 ~ 16567560 (-)
G53764 NA non-coding downstream 186754 16566667 ~ 16567143 (-)
G53763 NA non-coding downstream 187579 16565617 ~ 16566318 (-)
LOC122348047 NA non-coding upstream 140250 16926570 ~ 16931331 (-)
G53849 NA non-coding upstream 212906 16999226 ~ 17005896 (-)
G53850 NA non-coding upstream 213440 16999760 ~ 17006682 (-)
G53854 NA non-coding upstream 225899 17012219 ~ 17012982 (-)
G53859 NA non-coding upstream 245189 17031509 ~ 17031790 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 189559 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 1778729 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 2608617 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 2663456 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 2680198 14069113 ~ 14073699 (-)
G53797 tpm1,LOC103462590 other upstream 95573 16881893 ~ 16934252 (-)
serf2b NA other upstream 260124 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 1879953 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 1955840 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 2059956 18846276 ~ 19291166 (-)

Expression


Co-expression Network