ap1s1 (ap1s1,LOC107666294,LOC105921790,LOC103148860,LOC107593725,LOC108443977,LOC103385557)


Basic Information

Item Value
gene id ap1s1
gene name ap1s1,LOC107666294,LOC105921790,LOC103148860,LOC107593725,LOC108443977,LOC103385557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 15094536 ~ 15102463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043245315.1
TCAAAAGAACAATTCGTTCACAAAGCTACTCTAGGCTGCTTCAATGGGGCTCTGATACTACTAGCTGTCAGATAGACATGTATTGATAATATATCGCGGTATTTACCAAAAAGTGGTTTGCTGTTCACTGAAAATAACTGGCTGCTCTCAACAAGCCGTCAAAATGaTGCGCTTTATGCTTTTGTTCAGCCGGCAGGGGAAGCTGCGACTCCAGAAATGGTACACGGCTACGGCTGAGCGTGACAAGAAGAAGATGGTCAGGGAGCTCATGCAGGTGGTGCTGGCCAGAAAACCCAAAATGTGCAGCTTCCTGGAATGGAGAGATCTAAAGATAGTCTACAAGAGgTATGCCAGTCTATATTTCTGCTGTGCCGTGGAGGAGCAGGACAATGAGCTGATTACCCTGGAGGTCATCCATCGCTTTGTGGAGCTGCTGGATAAGTACTTTGGCAGTGTTTGTGAACTTGACATCATTTTTAACTTTGAGAAAGCTTACTTTATCCTGGATGAGTTTCTTATGGGGGGAGAAATTCAGGACACATCCAAGAAGAGTGTGCTCAAGGCCATCGAACAGGCCGACCTTCTGCAAGAGGAGGATGAGTCACCCAGGAGTGTCCTAGAGGAGATGGGGCTGGCCTAGTACTAGTTTCCAATGCAGTTACCACAGATGGTAAATTTCGGTACCGCTGCGACGCGTGGGCTTACGTGAAGGGGAGTTTGTGAATGGGTCCAAAGGGTGGGAGGAGAACGGGGGGAAAAAGAGGGTAGGTGGGGGTAATTTTGGTACTACTGAGATCAGCATGTGATTGTATTTCAattccaactttttttttgtcttttacatgttaaaatggCTGCCTAGCTGGGATCTCCTCTTATCTTGGTGTCTAGAGATAGACACTCAAATTTTGCAATCAGATGCATATATAGAAAAAGGAGTTTTAACAACAGGTCATGCAATCTCaccttttagttttatttccaAGAGAGTgattttattgttacatttatcAAGTGACCTGCTATCTGtagtagataaaaaaaaaaaaaaaacaacaacctcaAATTGAATCTTCCTAAATGCCATTACTATACATCTGCTGTAGCTGCTCAGGAAACAATGACACTGACCATCCAGccatgtttatttgtgtgagATGCAAATATTTGTACTTGTACCACTTTAAAGGAAGTGCTATTGCAGCATATGGACCATAAGtaaatcttttaatgtttttttctaatggACTGATTTTAAGGATATGTCCACCAGACGAGAGGGATATTAAATAGACCTTTTTAAATGGCTACAATGCTGAATGGACTGTATTGTGCAGTCTATTCATTCTGTTCTGTCCCTTGAGCCACAGCAGTAAAATGTCTGAATGTGTATTACTTTGAGAACAGGGCACAGAATCTCAACCACAAAATGGCGCAGAAGCTCTATCCTGTTTATCTTGGTCTACATCCTGCTTTCCAAAGACGTGTTTCTGACTGTAAGTGTGGCAGTGGAGTTGTAATAAGGGAGTATTTGTAGCTTGTTTCAGATAACAAAAGAGGGCTTTGATATTAAGTGTGATGTATTTACATAGCTTTTTAAACGTGGTGTGAAATAAGGGAATATTTTGAGATGaactgtctttcttttttttaagcaattgaATAATTCAGCATGAGGGCATGTTTATACCTGTGTAAAATCTGTCAGGTAACTAAAACAGAATTATGTgtgaatgtaattttataaataataaaacacaattttagcCTAAA

Function

symbol description
ap1s1 Acts upstream of or within extracellular matrix organization and nervous system development. Located in perinuclear region of cytoplasm and plasma membrane. Is expressed in several structures, including hatching gland; nervous system; polster; pronephric duct; and solid lens vesicle. Human ortholog(s) of this gene implicated in MEDNIK syndrome. Orthologous to human AP1S1 (adaptor related protein complex 1 subunit sigma 1).

NR:

description
PREDICTED: AP-1 complex subunit sigma-1A isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007399 nervous system development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030117 membrane coat cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043245315.1 True 1773 mRNA 0.40 5 15094536 15102463

Neighbor

gene id symbol gene type direction distance location
trnal-aag_31 NA coding downstream 61833 15032622 ~ 15032703 (-)
snapc2 LOC107666289,LOC107561849,LOC107750571 coding downstream 62408 15029093 ~ 15032128 (-)
ache ache,LOC107750572,LOC107678131,LOC107561856,LOC107749789,LOC107668174,LOC107593784 coding downstream 90527 14994497 ~ 15004009 (-)
zgc:92664 LOC107561866,LOC107594707,LOC107750573,LOC107749790,LOC107678180,LOC107668195 coding downstream 100392 14991315 ~ 14994144 (-)
cd99l2 LOC107561982,LOC107678034,LOC107668267,LOC107750583 coding downstream 181359 14901499 ~ 14913177 (-)
serpine1 serpine1,LOC107666277,LOC107668101,LOC107593715,LOC107754656 coding upstream 894 15103357 ~ 15106612 (-)
zgc:77439 zgc:77439,LOC107561800,LOC107666303,LOC107750567,LOC107594687,LOC107754666,LOC108443975,LOC108268285 coding upstream 14287 15116750 ~ 15122280 (-)
trnas-uga_119 NA coding upstream 19347 15121810 ~ 15121891 (-)
trappc14 si:dkey-3k24.5,cunh7orf43,LOC107594676,LOC107754664,LOC107687048,LOC107561780,LOC105895567 coding upstream 58722 15161185 ~ 15174557 (-)
gal3st4 gal3st4,LOC107750564,LOC107561786,LOC107666295,LOC107593694 coding upstream 72577 15175040 ~ 15182797 (-)
G53121 NA non-coding downstream 139964 14952192 ~ 14954572 (-)
G53119 NA non-coding downstream 143902 14947805 ~ 14950634 (-)
G53118 NA non-coding downstream 149521 14943010 ~ 14945015 (-)
G53091 NA non-coding downstream 173658 14839197 ~ 14920878 (-)
G53276 LOC101886486,LOC101886504,LOC101886427 non-coding upstream 235613 15338076 ~ 15342768 (-)
G53307 NA non-coding upstream 397458 15499921 ~ 15503896 (-)
G53309 ext2,LOC107750554,LOC107586005,LOC107754691 non-coding upstream 406717 15509180 ~ 15509681 (-)
G53326 rps13,LOC107586033 non-coding upstream 507023 15609486 ~ 15611883 (-)
G53338 NA non-coding upstream 583168 15685631 ~ 15686068 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 119368 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 949256 14144506 ~ 14145280 (-)
LOC122347917 LOC107738092,LOC107683518,LOC107548777 other downstream 1004095 14075543 ~ 14090441 (-)
G52897 LOC107558424,LOC107731920 other downstream 1020837 14069113 ~ 14073699 (-)
LOC122347915 NA other downstream 1026036 14065015 ~ 14068500 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other upstream 1457955 16560418 ~ 16564338 (-)
G53797 tpm1,LOC103462590 other upstream 1779430 16881893 ~ 16934252 (-)
serf2b NA other upstream 1943981 17046444 ~ 17048041 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 3563810 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 3639697 18742160 ~ 18794207 (-)

Expression


Co-expression Network