lpcat2 (lpcat2,LOC107713066,LOC107657092,LOC107755048,LOC107696694,LOC107548918)


Basic Information

Item Value
gene id lpcat2
gene name lpcat2,LOC107713066,LOC107657092,LOC107755048,LOC107696694,LOC107548918
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 20442147 ~ 20453358 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043243663.1
GCTCACTTGATTGTGAAACACATCCGCAGACCGCTAGGGCTGAAGTCATGTGTGAGGTGGTACTTGTGCGTAAAGAGGAAGCGCATTGCTGACAGAGGCTTGGACACGCGAGGACGCTGCTGGCGGCTGTGATGAGTGAAGATGCCTCCGCAAAGAGTGTTCGCGCTGCCCAGACAGCATTCCCTGCTGCTGCCCGCCGTCATCAACCCTTTCGTGCACGACCTTAAGTTAACCAAAGCCGATAAAATCAGATGTTTTCTTCAGGGAATCATCCTTGTGCCATTCCGTGGCGTTTTCTTGCTTCTCGTTCTGATGATGATGTGGCCGGTTTCTGTCATGATAACATTTGGACAGTCTCTGAAAGGAGCAGTGGAGCCAATGACTGGCTGGAGAAGGTTCATGCACAAAAGAGTGATGACCTTTCTAGGCCGGCTGTATTTCTTCGGCATGGGCTTCAGGGTGGTGGTGAAGGGGAAGCAGGCCAGCAGTGTAGAGGCCCCCATTCTAGCTGTGGCCCCCCACTCTTCTTTCTTTGATGCCATCGTCTGTATTGAAACCGGTCTACCCTCTACTGTTTCCCGTTCAGAGTCCCTGGAAGCACCAATTTTTGGAAGGTTTTTGCGTTGTGTGCAGCCAGTGCTTGTTTCACGCAAAGATCCAGACTCCCGTAGAAACACTATTTATGAGATTGAGCGGAGAGCAACGTCAGGAGGACACTGGCCACAGgtaCTGATTTTTCCTGAAGGAACATGTACAAACAGATCATGTCTCATTACCTTTAAACAAGGTGCCTTTGTCCCAGGGGTCCCAGTACAGCCTGTTCTGATCAGATACCCAAATAAATTGGACACAGTTACATGGACATGGCAGGGCCCGAAATCGGCCAGACTACTGCTGCTCACACTCTGTCAGCTCTATACTGCAGTCGAGGTTGAGtttttgccCCCTCAAATTCCTACTGAGATGGAGAAAAAGTGTCCTATCAAGTTTGCTCAATCAGTGAGAGCTGTGATGGCTGAGTCTCTGAACCTGCCGGTCACAGACCACACCTACGAAGACTGTCGTCTGATGATTGCGGCCGGAGAACTGACCCTGCCTATGGAGGCAGGTCTCGTGGAGTTTACCAAGATCAGCAGGAAATTGGAATTAAAATGGGACAATGTGAAGAAGGAATTGGAGAGTTTTGCCAATATAGCCTGTTCTTGCAAAGGCAGCAGCATCACAATTGAGGAGTTTGCCAGCTTTCTCAAACTGCCTGTCAGCCCAGCTCTGCAGGAGCTCTTCACTCTGTTTGACAGGAATGGCGATGGCACCATTGATTTCAGAGAGTATGTCATTGGTGTCACAGTTCTTTGCCGACCAGCTAATAATGAGGAAGTCATTCAGACTGCTTTTAAGTTGTTTGACATTGATGAGGACAACTGTATCACACAAGAGGAGTTTAGCAGTTTGCTGCGTTCTGCTCTTGGAGTGCGTGATCTTGACGTTGACAGCCTCTTCAAAGAAATTGATGCAGATGGATCAGGACACATAACGTATGatgagTTTCGTTCCTTCGCTCTCACCCACCCGGAGTATGCCAAGCTCTTCACCACCTACATCGAGCTACAGCGTTATCAGGGTCTTCAGGGAGAGGAGCTAGATTCTGATGCCAGTTTGATTCACTGCTGTAATTCTCTTCATAATAACCACCAAGAGGACAGTACCTCTGATAAGAAAGATGACTGACTGCACTCAGCCATAAGGTTCATGTTCTGCCATGCCATTTCAATACATGCCTTAAGCTTAAGTGGAGGGATTTTGTACACGTGCATATACCCTGTCAGCAGGTTTCTGTATACACAACCAAGTATTTCATAAAGTATTTAAAGGTTTTCAAATCAATGCAGGCATACAGGCatgctaaaacattttcataacacTTTCTGAGCCTACTAGTTAATGGCTGGTTAATAGCAGGAATTGGacgttaaaataaagtgtgtccaaactttttacATTCCTCAGCTTTTAAGCATGAagcttgttatttttttattcatttcattttataaagtctaaaatgcattatttgatgataagtaatttaataatttcactgGAGATTGTGCGcttgtgtgtctttttttttttttttttttttttttatgaatattttacaaaagaGATTCTTATACAAATacaaagtttcttttttcttttcccttttttcctttctgttcAGGGATGTTGGTACAGAAAGTGAGTTGTAATCAAAGGTTTTGCTTTGcatcttgtttttatttgcattcccATTGAGGGGAGTTGTTGCTGAGTTAGCGTTCTGTCCCTGCTGCTTGTTCAGACTAATACTCTGTTGCATCCACTGAAAATAGGCCAATTTGTGAGCAAACAGGCAACACAACACGCCCACAGTAGCACGCACCAAAGGGCTTGGTTCCAAATTATCCCTCTGCAGTggtatttatttagcaatgcaGGTTGCAATTAGGATTTTGTTAACACAGCaaagttagctttttttttttgcaattaaaaaaatcctttgaATTTTAA

Function

symbol description
lpcat2 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity and 1-alkylglycerophosphocholine O-acetyltransferase activity. Predicted to be involved in phospholipid metabolic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human LPCAT2 (lysophosphatidylcholine acyltransferase 2).

NR:

description
PREDICTED: lysophosphatidylcholine acyltransferase 2

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0047192 1-alkylglycerophosphocholine O-acetyltransferase activity molecular_function

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043243663.1 True 2556 mRNA 0.44 14 20442147 20453358

Neighbor

gene id symbol gene type direction distance location
slc6a2 slc6a2,LOC107713067,LOC107563470,LOC107696692,LOC107755047,LOC107657091,LOC107548932 coding downstream 5108 20419224 ~ 20437039 (-)
slc12a4 slc12a4,LOC107696691,LOC107548948,LOC107563468,LOC107740471,LOC107755124,LOC107657107 coding downstream 40193 20385764 ~ 20401954 (-)
hsd11b2 LOC107740467,LOC107696685,LOC107563464,LOC107548951,LOC107755122,LOC107657103 coding downstream 133080 20297848 ~ 20309067 (-)
LOC122349229 LOC107563501,LOC107740466,LOC107755044,LOC107548933 coding downstream 158936 20281280 ~ 20283211 (-)
ctrb.3 zgc:112160,LOC107740502,LOC107696673,LOC107563459,LOC107755043,LOC107548936 coding downstream 167965 20271435 ~ 20274182 (-)
mmp2 mmp2,LOC107713064,LOC107563472,LOC107755129,LOC107696695,LOC107548946 coding upstream 902 20454260 ~ 20467163 (-)
irx6a irx6a,LOC107563500,LOC107713056,LOC107696678,LOC107755049,LOC107657093 coding upstream 61335 20514693 ~ 20519289 (-)
irx5a irx5a,LOC107713063,LOC107696697,LOC107564297,LOC107548945,LOC107657111,LOC107755130 coding upstream 173219 20626577 ~ 20630082 (-)
fto fto,LOC107696699,LOC107550283,LOC107657113,LOC107560393 coding upstream 381257 20834615 ~ 20949971 (-)
cylda cyld,cylda,LOC107551493,LOC107550272 coding upstream 1009692 21463050 ~ 21477450 (-)
LOC122348241 NA non-coding downstream 127311 20313224 ~ 20314836 (-)
G54656 NA non-coding downstream 349408 20081230 ~ 20092739 (-)
G54636 rfx7,LOC107689974,LOC107740453,LOC107755110,LOC107553094,LOC107664392 non-coding downstream 447829 19993599 ~ 19994318 (-)
G54635 NA non-coding downstream 463338 19978060 ~ 19978809 (-)
G54632 NA non-coding downstream 469424 19972281 ~ 19972723 (-)
G54813 NA non-coding upstream 113200 20566558 ~ 20566908 (-)
G54818 NA non-coding upstream 154917 20608275 ~ 20608508 (-)
G54851 NA non-coding upstream 375871 20829229 ~ 20829441 (-)
G54852 NA non-coding upstream 376447 20829805 ~ 20830006 (-)
LOC122349513 NA non-coding upstream 577871 21031229 ~ 21033124 (-)
G54687 NA other downstream 161341 20278852 ~ 20280806 (-)
G54637 rfx7,LOC107689974,LOC107740453,LOC107563480,LOC107664392,LOC107755110,LOC107553094 other downstream 440501 19995062 ~ 20001646 (-)
tex9 tex9 other downstream 464866 19973261 ~ 19977281 (-)
map2k5 map2k5,LOC107755097,LOC107700484,LOC107663978 other downstream 672742 19726122 ~ 19769405 (-)
skor1a skor1,skor1a,LOC107663943,LOC107563488,LOC107553092,LOC107700374,LOC107740498 other downstream 720029 19714859 ~ 19722118 (-)
G54872 LOC107713054,LOC107550285,LOC107657115 other upstream 611575 21064933 ~ 21068375 (-)
cebpa cebpa,LOC107722391,LOC107696713,LOC107551484,LOC107733057,LOC107657126,LOC107580367 other upstream 1199963 21653321 ~ 21753438 (-)
G55165 cd59,LOC107560108,LOC107736732,LOC107677235,LOC107722399,LOC107554602 other upstream 1599438 22052796 ~ 22056245 (-)
si:dkey-23n7.10 si:dkey-23n7.10,LOC107560112,LOC107742582,LOC107554633,LOC107722376,LOC107703276 other upstream 1649556 22102914 ~ 22105329 (-)
LOC122347949 LOC107560124,LOC107722378,LOC107656186,LOC107554594,LOC107742573 other upstream 1979042 22432400 ~ 22440439 (-)

Expression


Co-expression Network