LOC122348824


Basic Information

Item Value
gene id LOC122348824
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 18769664 ~ 18771445 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251376.1
ttttacatGAAACCATATAAGCTGTTTCTCTTGCTGGTGCACTCTGCTAATGATACTTTCTTAGTGCAGTGTTTTGGCAAGCTGTGCAATGgcacattttttgtttcattatctCACTGAACTTGGAtgccaattaaaaaataaataaatagtctgTTGTGAAATTAGTCACCCTTGTGATATCAGTTTAATGAGAGAGCATCCAGAGTTGAAGGCATATCTctgcatttgtattaaatgaAGGATTACAATGAGCAGCACTGTGATCTCAGTCCCAGAACAGTAAAAACCAGATGGTCACAGGAGAGCCTCCAGGCGCAGGCATGTGTCCCCGAGTTGTCTGCAGTAAGGGGGAGTGACCCGCTCTTATCAGCGGCctctgtgtgagagagcgtgCAGCTCTCAGTTAGCCTTTGCTAACGCTCCTTGCAACATGGACATTTTGTAAAAGCTCTCACCACCGGAGCACTTTTATGAAAGTTATGACAGATCACACTGAGAAGTAGCTGTTCTCTTCATACCGTACCTGTGGTTTTCTCTGCACATCTCACTCTTCCTGGAGCCTCTCACGCCGTCATGATGCTATTTCTGCAGTGCTAtacgCTTCATGAGCATCACATCCACTTACCGTTTCACACCGTTGTTTGGGGTTTCGTCAcctggaaaagaaaaaagacccTCACAGTTGACAGAAATTACATGCGTCACAACTCATTTGTTCATTGTGACAAATCTCCGGGGTCATGTGGTTGTGTATGAGTGTAGGCtgtttttgatttcaatttgattta
>XR_006251377.1
GACACCATTCATGGTCAGGTCCTGGGAGAGCTTGTTCCTGACTTTGTTAAAGCTTgctttaattatgtaaaaaaagtttAGGACTGAACgttacatttattcagttttaaccGCTGCATCGatcatgaataattatttttgttatagcTTAAATTAACTTGGTATATTTAGTGTTTGAGATGTGCAGAGATTCATTTGAATGCTAGATATTCTTAAGAATCCTTGTAGTGGAGATCATTTTGGTGTTTTGCTGTGGTTCTATAGATTATTTGGAAGATGTGAttgtcattttgacatcaaTAGTGGTCAATAATGCTCCTTGCCTTTTTCTAACGGAGCAGCGTACAAAGGTCCCGCCTGACCAGCAGTGCtgattaacaaaaataataagtgcTCATGTCAGCTCCCTCACATTTAAGTACTAGAACGTAATAAAACGCCTTCACAAATGGCACAGTGCCAGCACTTTATTAGTTTAATGGCTTTCCCTGGTTCAGTCTCTGAATGGCCTCATTTAAAAGGACGTGCCAAGCAGGCAAGGTTTTTGTGACTTATCTGTTTTGGCTTCTTTTATTGTCTGGAGCAGCATATTTGAAGAAGTAGCTGTTCTCTTCATACCGTACCTGTGGTTTTCTCTGCACATCTCACTCTTCCTGGAGCCTCTCACGCCGTCATGATGCTATTTCTGCAGTGCTAtacgCTTCATGAGCATCACATCCACTTACCGTTTCACACCGTTGTTTGGGGTTTCGTCAcctggaaaagaaaaaagacccTCACAGTTGACAGAAATTACATGCGTCACAACTCATTTGTTCATTGTGACAAATCTCCGGGGTCATGTGGTTGTGTATGAGTGTAGGCtgtttttgatttcaatttgattta

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251376.1 False 791 lncRNA 0.43 3 18769664 18771445
XR_006251377.1 True 888 lncRNA 0.40 3 18769664 18770938

Neighbor

gene id symbol gene type direction distance location
slc17a6b slc17a6b,LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077 coding downstream 14023 18745266 ~ 18755641 (-)
gas2b gas2b,LOC107663938,LOC107740476,LOC107557699,LOC107755075,LOC107700396,LOC107553069 coding downstream 35960 18715702 ~ 18733704 (-)
LOC122349445 spi1b,LOC107554898,LOC107740418,LOC107700463,LOC107663967 coding downstream 87964 18674334 ~ 18681700 (-)
LOC122349441 kcna4,LOC107553071,LOC107700459,LOC107554896,LOC107740416,LOC107663977,LOC107755072 coding downstream 108267 18654926 ~ 18661397 (-)
LOC122349640 calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683 coding downstream 124139 18635454 ~ 18645525 (-)
LOC122348820 ano5b,LOC107557711,LOC107740423,LOC107663968,LOC107755078 coding upstream 23416 18794861 ~ 18815948 (-)
pkp3b pkp3b,LOC107740426,LOC107700470,LOC107663976,LOC107755082,LOC107557698 coding upstream 58204 18829649 ~ 18846646 (-)
cd81a cd81,LOC107740428,LOC107663969,LOC107553078,LOC107700472 coding upstream 76060 18847505 ~ 18869583 (-)
LOC122348203 ano9b,LOC107740427,LOC107557709,LOC107663986,LOC107700471,LOC107755081,LOC107553057 coding upstream 282341 19053786 ~ 19061813 (-)
LOC122348212 LOC107663940,LOC107740424,LOC107557710,LOC107553076,LOC107700468,LOC107755080,LOC107553074 coding upstream 290949 19062394 ~ 19066272 (-)
G54321 NA non-coding downstream 28654 18740775 ~ 18741010 (-)
G54320 NA non-coding downstream 48257 18721072 ~ 18721407 (-)
G54317 NA non-coding downstream 62804 18706455 ~ 18706860 (-)
G54292 NA non-coding downstream 191571 18541676 ~ 18578093 (-)
G54283 NA non-coding downstream 379134 18389206 ~ 18390530 (-)
LOC122348823 NA non-coding upstream 36351 18807796 ~ 18809269 (-)
G54331 NA non-coding upstream 126072 18897517 ~ 19290637 (-)
G54363 NA non-coding upstream 341187 19112632 ~ 19462589 (-)
G54369 LOC107553084,LOC107740497,LOC107700397,LOC107663947,LOC107557694 non-coding upstream 489513 19260958 ~ 19268667 (-)
G54391 coro2b,LOC105906559 non-coding upstream 616541 19387986 ~ 19397242 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other downstream 99831 18666273 ~ 18669833 (-)
serf2b NA other downstream 1721623 17046444 ~ 17048041 (-)
G53797 tpm1,LOC103462590 other downstream 1835412 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 2205326 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 3794496 14973703 ~ 14975168 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 74831 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 138203 18909648 ~ 18914921 (-)
G54377 mns1,LOC107755086,LOC107553079,LOC107740431,LOC107663983 other upstream 540203 19311648 ~ 19312124 (-)
anp32a anp32a,LOC107755092,LOC107700478,LOC107740437,LOC107663971,LOC105906553 other upstream 633704 19405149 ~ 19411593 (-)
skor1a skor1,skor1a,LOC107663943,LOC107563488,LOC107553092,LOC107700374,LOC107740498 other upstream 943414 19714859 ~ 19722118 (-)

Expression


Co-expression Network