G54317


Basic Information

Item Value
gene id G54317
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 18706455 ~ 18706860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU80572
TCATTGTCTAAAGTTCCAGGCAGTTTCCCACACACAGTGGGCTCTGTCAGGGCAGATGACAAAGGAAGACAACCCACAGGCTAGTCGTTATGGCAACAGTCCCTTGCCAAACAGACTGTGTTGAAATAGGACAAGTGTGAACACAAAATCAATACCACCCCCTGATTCCCATATGACATTTCAGACCCAGACTGTGCAGTAAAAATGTGCTTGTGGCACGCATCTTGGCATAGCCGACACGGTTGCAGAAACGCTACTTTCAACATATACAGGACTCGAAGCGGCAGGCAGTGCAAGCCATTTGTGAGTAAGACATATCAAAAATCCAAGGACCTGGCAGACTGGGACAAAATAGACTCCCGAGATGCGCAAATAAACTCTACACAGTTGTCATCCAAGGAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80572 True 406 lncRNA 0.47 1 18706455 18706860

Neighbor

gene id symbol gene type direction distance location
LOC122349445 spi1b,LOC107554898,LOC107740418,LOC107700463,LOC107663967 coding downstream 24755 18674334 ~ 18681700 (-)
LOC122349441 kcna4,LOC107553071,LOC107700459,LOC107554896,LOC107740416,LOC107663977,LOC107755072 coding downstream 45058 18654926 ~ 18661397 (-)
LOC122349640 calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683 coding downstream 60930 18635454 ~ 18645525 (-)
LOC122348778 LOC107725540,LOC107590035,LOC107587062,LOC107744909 coding downstream 89290 18544711 ~ 18617165 (-)
LOC122348011 LOC107749239,LOC107663077,LOC107574829,LOC107573432 coding downstream 178675 18523730 ~ 18527780 (-)
gas2b gas2b,LOC107663938,LOC107740476,LOC107557699,LOC107755075,LOC107700396,LOC107553069 coding upstream 8842 18715702 ~ 18733704 (-)
slc17a6b slc17a6b,LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077 coding upstream 38406 18745266 ~ 18755641 (-)
LOC122347937 ano5b,LOC107557711,LOC107740423,LOC107663968,LOC107755078 coding upstream 49958 18756818 ~ 18777916 (-)
LOC122348820 ano5b,LOC107557711,LOC107740423,LOC107663968,LOC107755078 coding upstream 88001 18794861 ~ 18815948 (-)
pkp3b pkp3b,LOC107740426,LOC107700470,LOC107663976,LOC107755082,LOC107557698 coding upstream 122789 18829649 ~ 18846646 (-)
G54292 NA non-coding downstream 128362 18541676 ~ 18578093 (-)
G54283 NA non-coding downstream 315925 18389206 ~ 18390530 (-)
LOC122349130 NA non-coding downstream 320444 18360916 ~ 18386011 (-)
G54104 NA non-coding downstream 567516 18138653 ~ 18138939 (-)
G54093 NA non-coding downstream 631973 18070651 ~ 18074482 (-)
G54320 NA non-coding upstream 14212 18721072 ~ 18721407 (-)
G54321 NA non-coding upstream 33915 18740775 ~ 18741010 (-)
LOC122348824 NA non-coding upstream 62804 18769664 ~ 18771445 (-)
LOC122348823 NA non-coding upstream 100936 18807796 ~ 18809269 (-)
G54331 NA non-coding upstream 190657 18897517 ~ 19290637 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other downstream 36622 18666273 ~ 18669833 (-)
serf2b NA other downstream 1658414 17046444 ~ 17048041 (-)
G53797 tpm1,LOC103462590 other downstream 1772203 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 2142117 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 3731287 14973703 ~ 14975168 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 35300 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 139416 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 202788 18909648 ~ 18914921 (-)
G54377 mns1,LOC107755086,LOC107553079,LOC107740431,LOC107663983 other upstream 604788 19311648 ~ 19312124 (-)
anp32a anp32a,LOC107755092,LOC107700478,LOC107740437,LOC107663971,LOC105906553 other upstream 698289 19405149 ~ 19411593 (-)

Expression


Co-expression Network