LOC122348778 (LOC107725540,LOC107590035,LOC107587062,LOC107744909)


Basic Information

Item Value
gene id LOC122348778
gene name LOC107725540,LOC107590035,LOC107587062,LOC107744909
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056705.1
NCBI id CM032074.1
chromosome length 41700998
location 18544711 ~ 18617165 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043244634.1
TGCACGACAACAGCAGCAACTTCTGCAGCAACAACACAAAATCAACCTCCTGCAGCAACAGATCCAGCAGGTCCAGGGTCAGTTGCCTCCACTGATGATACCAGTGTTCCCTCCAGATCAGAGAACTCTGGCGGCCGCTGCAGCACAACAAGGATTTCTACTTCCTCCAGGGTTCAACTACAAACCAGGCTGCAGTGACCCTTACCCTTTACAGCTAATCCCTACGACTATGGCAGCGGCTGCTGCGGCGACGCCTGGCCTCGGCCCTCTTCAACTGCAGCAGTTGTATGCAGCTCAGCTAGCTGCCATGCAGGTGTCTCCGGGGGCCAAACACAGCACAGTGCCTCAGGCCAACCTGGCAACCGGAACACTCTCGCCCACCAGCGGCCAGAGCGAGAAAAACAGAAGCACCCCACCACCAAAGCCCAAGGACGAGGGCGCTCAGCCCTTGAATCTGTCGTCCAAGCCTAAGGCATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCCTGAAGCTGGGCCCCGGGTCCCTGAAGCACAGCGCCCCCTCCAGCATCGGAGGACCGCCGTCCAGACTCAGCTCCATAGACCTGCTGTCATCCATCACCTCCGGCGGCTACCTGAACGACCATGAGGCAGTGACCAAAGCTTTCCAGGAGGCCCGACAGATGAAGGAGCAGCTAAAAAGAGAACAGCAGGTTCTGGATGCCAAAGTAGCGGCAGTCAACAGCCTGAGCCTCAACAACGGTCGCTCAGAGAAGGATAAAGCCGCTCTTGAAAGCCTGAGCCAACAATTAAAACAGTCTGAAGAAAGCAAGTTCACTCACGCAATGATGGACTTTGGCATCAGTGGCGATTCAGATGGAAGCCCGAGTGTGTCAGACTCTCGAATCTTCAGGGAGGCTCGAGGACGTGGCAGCAGCGAACCGCACATCAAGCGGCCCATGAACGCCTTTATGGTCTGGGCTAAAGACGAGAGGAGGAAGATCCTTCAGGCCTTCCCTGACATGCATAACTCAAACATCAGCAAGATCCtcgGTTCTCGTTGGAAGGCCATGACCAACCTGGAAAAGCAGCCATACTATGAAGAACAGGCCCGTCTTAGTAAGCAGCACCTAGAAAAATACCCAGACTACAAGTACAAACCACGGCCCAAGCGCACCTGCCTAGTGGACGGAAAGAAACTGCGCATAGGTGAATATAAGGCCATCATGCGCAACCGCAGACAGGAAATGCGCCAATACTTCACCGTAGGGCAGCAGGCCCAGTTGCCTTTGTCCTCAGCGGGCGTTGTGTACCCAGGCGCACTCTCTATGGCAGGAATGCCCTCTCCACAGATGCCCTCTGAGCACTCGAGCATGTCCAGTAGCCCCGAACCTGTCCCACCCACCAGCCAGCCCTCTTACCTCACACACAAGGGGGAGGGGCCTCGCGTTAAGGAGGAGGAGCTCCGAATGGACGACGGCAACGGCGACGCCTACGATGACTTCGACTACGAAGACGATGACGGGGACTATGGAAGCGACAGCGAGAATCACATCACTCAGTAAACCTGCCAATCACTGACATCTCACCAGTCACCAGGCATCTCACGCAAGCAAACTTCATTCCGCCCCCATACACCGTCCAATCAGGACTCCTCCAGAGCCAAGCCCGATATACACAGCAAAGCACAGGACCTGTCAATCAAAGTGACTGTTACATGGAAAGGAGGGTCTTGTAAAAGAAGCATAACACTTGCCTTGACTCCCGCTGAGCGAAACGTACCGCGGCAAGTTCATATTGAATCATGAGTAAGCTACGATGACATAGGAAAAATGACCCTTAAACGGTTTGTTATCGAGACATTTATTACTAAGGACCTGTCAGTCGACCCGTCATAGACACTTTAAAATGGTGGACCTGTTTGTTTCTAAAGAGACActtttaaacagctttttttcttgGTTCTATAATATTCTCACTCAGGTACACAGTGCCAACAAGTGGCTTGTGaatgtgattttgttgtttttgtgctaCAGTTTTAATagagaaaaaagacatttattttcctcttcaCCGTAAAGCACCTGACAGgagtaaaaatgacaaacattacctttttttttttggtttgtttttccttCGGCGTGCTATTAGCTGAATCTCTTTCTATCATCCTCACGCCCATGTCCTCTCACTCAAAGATGTCTTTTCTGTTGGACGAAAGGATGGAAGGGAGGATTCACGTCCCTTCACTCAGGAGTTCGGACATCGCTGGATGACAGACAATCCCTCCTTCCTCACATCTTTTCCTCTTGACACGCTTTTACTGttcctttctcctcctcttctgtgGGAGCTTTGGATGTTGACGTCTCTTTCAGGTGTGGAGACAAACTTTATGAGATAGCACAAACTTTGTGTTTGGTGAACAGCTGACATGGCGATGGTTATCATGGAGAGTGAAGCCTCGAGCAGAATTT
>XM_043244635.1
GCACGACAACAGCAGCAACTTCTGCAGCAACAACACAAAATCAACCTCCTGCAGCAACAGATCCAGGTCCAGGGTCAGTTGCCTCCACTGATGATACCAGTGTTCCCTCCAGATCAGAGAACTCTGGCGGCCGCTGCAGCACAACAAGGATTTCTACTTCCTCCAGGGTTCAACTACAAACCAGGCTGCAGTGACCCTTACCCTTTACAGCTAATCCCTACGACTATGGCAGCGGCTGCTGCGGCGACGCCTGGCCTCGGCCCTCTTCAACTGCAGCAGTTGTATGCAGCTCAGCTAGCTGCCATGCAGGTGTCTCCGGGGGCCAAACACAGCACAGTGCCTCAGGCCAACCTGGCAACCGGAACACTCTCGCCCACCAGCGGCCAGAGCGAGAAAAACAGAAGCACCCCACCACCAAAGCCCAAGGACGAGGGCGCTCAGCCCTTGAATCTGTCGTCCAAGCCTAAGGCATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCCTGAAGCTGGGCCCCGGGTCCCTGAAGCACAGCGCCCCCTCCAGCATCGGAGGACCGCCGTCCAGACTCAGCTCCATAGACCTGCTGTCATCCATCACCTCCGGCGGCTACCTGAACGACCATGAGGCAGTGACCAAAGCTTTCCAGGAGGCCCGACAGATGAAGGAGCAGCTAAAAAGAGAACAGCAGGTTCTGGATGCCAAAGTAGCGGCAGTCAACAGCCTGAGCCTCAACAACGGTCGCTCAGAGAAGGATAAAGCCGCTCTTGAAAGCCTGAGCCAACAATTAAAACAGTCTGAAGAAAGCAAGTTCACTCACGCAATGATGGACTTTGGCATCAGTGGCGATTCAGATGGAAGCCCGAGTGTGTCAGACTCTCGAATCTTCAGGGAGGCTCGAGGACGTGGCAGCAGCGAACCGCACATCAAGCGGCCCATGAACGCCTTTATGGTCTGGGCTAAAGACGAGAGGAGGAAGATCCTTCAGGCCTTCCCTGACATGCATAACTCAAACATCAGCAAGATCCtcgGTTCTCGTTGGAAGGCCATGACCAACCTGGAAAAGCAGCCATACTATGAAGAACAGGCCCGTCTTAGTAAGCAGCACCTAGAAAAATACCCAGACTACAAGTACAAACCACGGCCCAAGCGCACCTGCCTAGTGGACGGAAAGAAACTGCGCATAGGTGAATATAAGGCCATCATGCGCAACCGCAGACAGGAAATGCGCCAATACTTCACCGTAGGGCAGCAGGCCCAGTTGCCTTTGTCCTCAGCGGGCGTTGTGTACCCAGGCGCACTCTCTATGGCAGGAATGCCCTCTCCACAGATGCCCTCTGAGCACTCGAGCATGTCCAGTAGCCCCGAACCTGTCCCACCCACCAGCCAGCCCTCTTACCTCACACACAAGGGGGAGGGGCCTCGCGTTAAGGAGGAGGAGCTCCGAATGGACGACGGCAACGGCGACGCCTACGATGACTTCGACTACGAAGACGATGACGGGGACTATGGAAGCGACAGCGAGAATCACATCACTCAGTAAACCTGCCAATCACTGACATCTCACCAGTCACCAGGCATCTCACGCAAGCAAACTTCATTCCGCCCCCATACACCGTCCAATCAGGACTCCTCCAGAGCCAAGCCCGATATACACAGCAAAGCACAGGACCTGTCAATCAAAGTGACTGTTACATGGAAAGGAGGGTCTTGTAAAAGAAGCATAACACTTGCCTTGACTCCCGCTGAGCGAAACGTACCGCGGCAAGTTCATATTGAATCATGAGTAAGCTACGATGACATAGGAAAAATGACCCTTAAACGGTTTGTTATCGAGACATTTATTACTAAGGACCTGTCAGTCGACCCGTCATAGACACTTTAAAATGGTGGACCTGTTTGTTTCTAAAGAGACActtttaaacagctttttttcttgGTTCTATAATATTCTCACTCAGGTACACAGTGCCAACAAGTGGCTTGTGaatgtgattttgttgtttttgtgctaCAGTTTTAATagagaaaaaagacatttattttcctcttcaCCGTAAAGCACCTGACAGgagtaaaaatgacaaacattacctttttttttttggtttgtttttccttCGGCGTGCTATTAGCTGAATCTCTTTCTATCATCCTCACGCCCATGTCCTCTCACTCAAAGATGTCTTTTCTGTTGGACGAAAGGATGGAAGGGAGGATTCACGTCCCTTCACTCAGGAGTTCGGACATCGCTGGATGACAGACAATCCCTCCTTCCTCACATCTTTTCCTCTTGACACGCTTTTACTGttcctttctcctcctcttctgtgGGAGCTTTGGATGTTGACGTCTCTTTCAGGTGTGGAGACAAACTTTATGAGATAGCACAAACTTTGTGTTTGGTGAACAGCTGACATGGCGATGGTTATCATGGAGAGTGAAGCCTCGAGCAGAATTT
>XM_043244636.1
CAGGCACTTTGGGAACTGCCGCCCCGTAAGGCCTCGAGCGAGGGACGGAGAGAGACGGCGAGCTGCTTTTCTTGCGTCTCAGAATCGTCTCCGGCTGTACGGGGACTGAAAGAGACACGCGTGCGAGGgagacgctgtgtgtgtgtgtgtgtgagcggagGAGCTTAACAGCTGCTCTGCCGGTGGCTCCGttcgtgtgtgtgagtgtactTCGTTCAGCGTGGTGTCGGATGTGTTCTGACAAGACGTGCCGTGGCTGGGACGAACGGCCTGTCTGTGCTcgagtgtttttgtgtgtgtttgtgtgtatcagAAATTGAGGAAGTGTTATGCCATCCAGCTCTGAAGTGGTGTGTGAAGAACAGAGAAGGACAGGAGCAGCCAAACAGGCTGAGGGGGACAGTATCAGAATCATGTCTTCCAAGCAAGCCACCTCTCCGTTCGCCTCAACCCCTGACGGAGGCGAGGATGGAGTGAATCAGGAGCGCATGTCCTGGGAGAAAGAGGAGAACTCGGAGTCACTAGTCGCCCCTCAGCTGCCCCTGCACAATCTGCTCCACAACAAACCTCCCCCGGAGGAGctccagccaatcagcagcAGCGTGCCGCCCGAATCCGACTGGGACAGCCTGATGTCAGCCCAGCAGCGCATGGAATCGGACAGCAATAAAGTATGTTCCTTATACTCCTTCCGGAATAACTCTACCTCTCCACACAAGCCAGAGGAGGGGGCCAGGGAGCGCGGCGACCTGCTGAGCAGTTCAGCCTTCGGAACGCCAGAGCGCCGCAAAGGAAGCCTGGCCGATGTGGTGGACACACTGAAACAGAAGAAACTAGAGGAGATGACAAAGACAGAGCAAGACGAATCCTCCTGCATGGAGAAACTCCTTTCAAAAGACTGGAAAGAGAAGATGGAGCGACTCAACACAGGCGAGCTGTTAGGAGAAATTAAAGGTACTCCAGAAAGTCTTGCGGAGAAGGAGCGACAGCTCTCCACCATGATCACACAACTCATCAGCCTGCGAGAGCAGCTCCTGGCCGCCCAtgatgagcagaagaaactGGCTGCCTCACAGATGGAGAAACAACGTCAGCAAATGGAGCTGGCACGCCAACAGCAAGAGCAGtatTTTGACATGTTCTGTCCACAGATTGCACGACAACAGCAGCAACTTCTGCAGCAACAACACAAAATCAACCTCCTGCAGCAACAGATCCAGCAGGTCCAGGGTCAGTTGCCTCCACTGATGATACCAGTGTTCCCTCCAGATCAGAGAACTCTGGCGGCCGCTGCAGCACAACAAGGATTTCTACTTCCTCCAGGGTTCAACTACAAACCAGGTGACCCTTACCCTTTACAGCTAATCCCTACGACTATGGCAGCGGCTGCTGCGGCGACGCCTGGCCTCGGCCCTCTTCAACTGCAGCAGTTGTATGCAGCTCAGCTAGCTGCCATGCAGGTGTCTCCGGGGGCCAAACACAGCACAGTGCCTCAGGCCAACCTGGCAACCGGAACACTCTCGCCCACCAGCGGCCAGAGCGAGAAAAACAGAAGCACCCCACCACCAAAGCCCAAGGACGAGGGCGCTCAGCCCTTGAATCTGTCGTCCAAGCCTAAGGCATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCCTGAAGCTGGGCCCCGGGTCCCTGAAGCACAGCGCCCCCTCCAGCATCGGAGGACCGCCGTCCAGACTCAGCTCCATAGACCTGCTGTCATCCATCACCTCCGGCGGCTACCTGAACGACCATGAGGCAGTGACCAAAGCTTTCCAGGAGGCCCGACAGATGAAGGAGCAGCTAAAAAGAGAACAGCAGGTTCTGGATGCCAAAGTAGCGGCAGTCAACAGCCTGAGCCTCAACAACGGTCGCTCAGAGAAGGATAAAGCCGCTCTTGAAAGCCTGAGCCAACAATTAAAACAGTCTGAAGAAAGCAAGTTCACTCACGCAATGATGGACTTTGGCATCAGTGGCGATTCAGATGGAAGCCCGAGTGTGTCAGACTCTCGAATCTTCAGGGAGGCTCGAGGACGTGGCAGCAGCGAACCGCACATCAAGCGGCCCATGAACGCCTTTATGGTCTGGGCTAAAGACGAGAGGAGGAAGATCCTTCAGGCCTTCCCTGACATGCATAACTCAAACATCAGCAAGATCCtcgGTTCTCGTTGGAAGGCCATGACCAACCTGGAAAAGCAGCCATACTATGAAGAACAGGCCCGTCTTAGTAAGCAGCACCTAGAAAAATACCCAGACTACAAGTACAAACCACGGCCCAAGCGCACCTGCCTAGTGGACGGAAAGAAACTGCGCATAGGTGAATATAAGGCCATCATGCGCAACCGCAGACAGGAAATGCGCCAATACTTCACCGTAGGGCAGCAGGCCCAGTTGCCTTTGTCCTCAGCGGGCGTTGTGTACCCAGGCGCACTCTCTATGGCAGGAATGCCCTCTCCACAGATGCCCTCTGAGCACTCGAGCATGTCCAGTAGCCCCGAACCTGTCCCACCCACCAGCCAGCCCTCTTACCTCACACACAAGGGGGAGGGGCCTCGCGTTAAGGAGGAGGAGCTCCGAATGGACGACGGCAACGGCGACGCCTACGATGACTTCGACTACGAAGACGATGACGGGGACTATGGAAGCGACAGCGAGAATCACATCACTCAGTAAACCTGCCAATCACTGACATCTCACCAGTCACCAGGCATCTCACGCAAGCAAACTTCATTCCGCCCCCATACACCGTCCAATCAGGACTCCTCCAGAGCCAAGCCCGATATACACAGCAAAGCACAGGACCTGTCAATCAAAGTGACTGTTACATGGAAAGGAGGGTCTTGTAAAAGAAGCATAACACTTGCCTTGACTCCCGCTGAGCGAAACGTACCGCGGCAAGTTCATATTGAATCATGAGTAAGCTACGATGACATAGGAAAAATGACCCTTAAACGGTTTGTTATCGAGACATTTATTACTAAGGACCTGTCAGTCGACCCGTCATAGACACTTTAAAATGGTGGACCTGTTTGTTTCTAAAGAGACActtttaaacagctttttttcttgGTTCTATAATATTCTCACTCAGGTACACAGTGCCAACAAGTGGCTTGTGaatgtgattttgttgtttttgtgctaCAGTTTTAATagagaaaaaagacatttattttcctcttcaCCGTAAAGCACCTGACAGgagtaaaaatgacaaacattacctttttttttttggtttgtttttccttCGGCGTGCTATTAGCTGAATCTCTTTCTATCATCCTCACGCCCATGTCCTCTCACTCAAAGATGTCTTTTCTGTTGGACGAAAGGATGGAAGGGAGGATTCACGTCCCTTCACTCAGGAGTTCGGACATCGCTGGATGACAGACAATCCCTCCTTCCTCACATCTTTTCCTCTTGACACGCTTTTACTGttcctttctcctcctcttctgtgGGAGCTTTGGATGTTGACGTCTCTTTCAGGTGTGGAGACAAACTTTATGAGATAGCACAAACTTTGTGTTTGGTGAACAGCTGACATGGCGATGGTTATCATGGAGAGTGAAGCCTCGAGCAGAATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043244634.1 False 2482 mRNA 0.52 10 18544711 18573318
XM_043244635.1 False 2478 mRNA 0.52 10 18544711 18573317
XM_043244636.1 True 3629 mRNA 0.53 16 18544711 18617165

Neighbor

gene id symbol gene type direction distance location
LOC122348011 LOC107749239,LOC107663077,LOC107574829,LOC107573432 coding downstream 16931 18523730 ~ 18527780 (-)
LOC122349713 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 coding downstream 144205 18397022 ~ 18400506 (-)
kif18a kif18a,LOC107554904,LOC107740412,LOC107670760,LOC107700457,LOC107755033,LOC107595063 coding downstream 406338 18117091 ~ 18138373 (-)
bdnf bdnf,LOC107554894,LOC107595107,LOC107700392,LOC107670730 coding downstream 442512 18085501 ~ 18102199 (-)
lin7c lin7c,LOC107755067,LOC107595064,LOC107091323,LOC108432380 coding downstream 461619 18075757 ~ 18083092 (-)
LOC122349640 calca,LOC107593372,LOC107688176,LOC107750650,LOC107700617,LOC107586036,LOC107754683 coding upstream 18289 18635454 ~ 18645525 (-)
LOC122349441 kcna4,LOC107553071,LOC107700459,LOC107554896,LOC107740416,LOC107663977,LOC107755072 coding upstream 37761 18654926 ~ 18661397 (-)
LOC122349445 spi1b,LOC107554898,LOC107740418,LOC107700463,LOC107663967 coding upstream 57169 18674334 ~ 18681700 (-)
gas2b gas2b,LOC107663938,LOC107740476,LOC107557699,LOC107755075,LOC107700396,LOC107553069 coding upstream 98537 18715702 ~ 18733704 (-)
slc17a6b slc17a6b,LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077 coding upstream 128101 18745266 ~ 18755641 (-)
G54283 NA non-coding downstream 154181 18389206 ~ 18390530 (-)
LOC122349130 NA non-coding downstream 158700 18360916 ~ 18386011 (-)
G54104 NA non-coding downstream 405772 18138653 ~ 18138939 (-)
G54093 NA non-coding downstream 470229 18070651 ~ 18074482 (-)
G54087 mybpc3,LOC107740474,LOC107670721,LOC107554890 non-coding downstream 488174 18055593 ~ 18056537 (-)
G54317 NA non-coding upstream 89290 18706455 ~ 18706860 (-)
G54320 NA non-coding upstream 103907 18721072 ~ 18721407 (-)
G54321 NA non-coding upstream 123610 18740775 ~ 18741010 (-)
LOC122348824 NA non-coding upstream 152499 18769664 ~ 18771445 (-)
LOC122348823 NA non-coding upstream 190631 18807796 ~ 18809269 (-)
serf2b NA other downstream 1496670 17046444 ~ 17048041 (-)
G53797 tpm1,LOC103462590 other downstream 1610459 16881893 ~ 16934252 (-)
nrn1lb nrn1lb,LOC107750645,LOC107586039,LOC107594653,LOC107741430 other downstream 1980373 16560418 ~ 16564338 (-)
rnaseka rnaseka,rnasek,LOC107750577,LOC107561913,LOC107678101,LOC107749794,LOC107594736,LOC107669181 other downstream 3569543 14973703 ~ 14975168 (-)
G52917 LOC105896813 other downstream 4399431 14144506 ~ 14145280 (-)
LOC122349446 arl14ep,LOC107663944,LOC107740492,LOC107554899,LOC107700465,LOC107755038 other upstream 49108 18666273 ~ 18669833 (-)
G54312 LOC107663979,LOC107557712,LOC107740422,LOC107700467,LOC107553073,LOC107755077,LOC108430810 other upstream 124995 18742160 ~ 18794207 (-)
G54330 LOC107557708,LOC107553077,LOC107740430,LOC107700368 other upstream 229111 18846276 ~ 19291166 (-)
LOC122348206 tph1b,LOC107740493,LOC107557706,LOC107663941,LOC107553080,LOC108430795 other upstream 292483 18909648 ~ 18914921 (-)
G54377 mns1,LOC107755086,LOC107553079,LOC107740431,LOC107663983 other upstream 694483 19311648 ~ 19312124 (-)

Expression


Co-expression Network