G28849


Basic Information

Item Value
gene id G28849
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8527445 ~ 8527675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32624
CGTTACAGTTACGTCAAAAAACGTAGTAATCAGATTACAGTTACATTTTGAAAAAAGGGGGGATACTATCAGGATTACAGTCGTTTCATTTAAAACTAAATAAATCATTATTTTGCCATTATAACACATATTAAGCGCTGCTTGATTATACAGTATTTCCTGGCTCTGTTGCCAGTGATGACTCACGTGAGCCACCTGCTGGTGCATGCGCAAATAACACCCGTCTACAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32624 True 231 lncRNA 0.38 1 8527445 8527675

Neighbor

gene id symbol gene type direction distance location
CI01000004_08518587_08521540 EIF5A2, EIF5A.L, EIF5A coding upstream 5784 8518462 ~ 8521661 (+)
CI01000004_08507941_08515797 SLC2A2 coding upstream 11137 8507941 ~ 8516308 (+)
CI01000004_08458998_08503889 TNIK, TNIKA coding upstream 23453 8458998 ~ 8503992 (+)
CI01000004_08414451_08436256 NA coding upstream 91182 8414316 ~ 8439933 (+)
CI01000004_08382042_08402126 PLD1A coding upstream 124931 8380472 ~ 8402514 (+)
CI01000004_08573940_08586930 NA coding downstream 45066 8572741 ~ 8587170 (+)
CI01000004_08618566_08669147 NA coding downstream 90891 8618566 ~ 8669147 (+)
CI01000004_08693419_08703448 PLPPR3A coding downstream 165744 8693419 ~ 8704156 (+)
CI01000004_08730011_08731219 PALM1B coding downstream 202336 8730011 ~ 8732509 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding downstream 208500 8736175 ~ 8744387 (+)
G28848 NA non-coding upstream 55561 8470745 ~ 8471884 (+)
G28843 NA non-coding upstream 116225 8410726 ~ 8411220 (+)
G28835 NA non-coding upstream 158372 8368861 ~ 8369073 (+)
G28834 NA non-coding upstream 161524 8365695 ~ 8365921 (+)
G28819 NA non-coding upstream 243348 8277202 ~ 8284097 (+)
G28855 NA non-coding downstream 26557 8554232 ~ 8554563 (+)
G28858 NA non-coding downstream 68177 8595852 ~ 8597783 (+)
G28861 NA non-coding downstream 74948 8602623 ~ 8602843 (+)
G28862 NA non-coding downstream 75420 8603095 ~ 8603461 (+)
G28863 NA non-coding downstream 75930 8603605 ~ 8603927 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 871062 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1953024 6570771 ~ 6572667 (+)
G28302 NA other upstream 2025358 6470028 ~ 6502087 (+)
G28165 NA other upstream 2794444 5732589 ~ 5733001 (+)
G28859 NA other downstream 71560 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 448763 8976254 ~ 8980984 (+)
G30797 NA other downstream 1969701 10497376 ~ 10497788 (+)
G31710 NA other downstream 3109576 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 3137098 11666900 ~ 11667659 (+)

Expression


Co-expression Network