Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

ornamental fish

G59652

Basic Information

Item	Value
gene id	G59652
gene name	NA
gene type	non-coding
species	tiger barb (Puntius tetrazona)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NC_056706.1
NCBI id	CM032075.1
chromosome length	24299999
location	86171 ~ 86380 (+)
genome version	ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88172
CACACTTTTTAATGACTGGTATGACACCTTTACATACAAACCAAAGGTAGATTGttaagataattaaaaataagagaattattcaaacaaatgtATTGCTTCTATTATTGGATGAAAACTGTGTTTTAACGTATAATGTTATTTGAAATGCTtcctttttgtaaaataaacctTTCAGTGCAGCGTTCCGGTGTGCTCGGGAATTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU88172	True	210	lncRNA	0.30	1	86171	86380

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
prxl2c	aaed1	coding	downstream	448303	534683 ~ 537150 (+)
znf367	znf367,LOC107726881,LOC107704585,LOC107568105	coding	downstream	466693	553073 ~ 557380 (+)
smyd1b	smyd1b,LOC107712675,LOC107569675,LOC107661523,LOC108430330	coding	downstream	527164	613544 ~ 628517 (+)
znf366	znf366,LOC107726882,LOC107573350,LOC107704577,LOC108430334	coding	downstream	549043	635423 ~ 648303 (+)
mrps27	mrps27	coding	downstream	566209	652589 ~ 658219 (+)
G59651	NA	non-coding	upstream	1396	84558 ~ 84775 (+)
G59656	NA	non-coding	downstream	73311	159691 ~ 262580 (+)
LOC122351070	NA	non-coding	downstream	73889	160269 ~ 168336 (+)
G59662	NA	non-coding	downstream	137593	223973 ~ 236658 (+)
G59735	NA	non-coding	downstream	476480	562860 ~ 565830 (+)
G59756	NA	non-coding	downstream	480915	567295 ~ 644568 (+)
cdc14b	cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987	other	downstream	451395	537775 ~ 550687 (+)
G59807	NA	other	downstream	717273	803653 ~ 804839 (+)
znf608	znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216	other	downstream	755697	842077 ~ 852004 (+)
pggt1b	pggt1b	other	downstream	1124435	1210815 ~ 1218804 (+)
G60259	LOC107560031,LOC107559593,LOC108412499,LOC107754396	other	downstream	1829080	1915460 ~ 1918371 (+)

Expression

Co-expression Network