pggt1b (pggt1b)


Basic Information

Item Value
gene id pggt1b
gene name pggt1b
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1210815 ~ 1218804 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU88575
ATTTTCGGATCCAGATGTGGACCAGCAGCTGTAATGGAGCACAGCGGATGCTGTTCCTCTTTATGACCGCTAGGTGGCCACAGCATAAACCGTTAGGAAAAGCTTCGAGTAATTAGTATTTTTCCGATACTATTGTGTTAAAAGCTTCGATGGTTAAAAGCGCCTCGCTACATCACGTCTGTCTGTAATTCATTAAGAAGTGAGAGTCAGAGCAGCGGCGGCGCGCACGGTCGTGTGGGACTCTTATTTTGCCGCGTGTTTGTGCAGCGGAAGCGGAAGCGGAGCCTGGACCGTGTTTCTCCTGAGCGATGATGGCGGATTTTGACCAGGAGCAGGAGGATTTTCTGCGCGAGCGGCACGTGCGTTTCTTCCAGCGCTGTCTGCACGTGCTTCCCGAGAGATACGCGCCGTATGAGACCAGCAGGTTCTTCCGACTGAAGACGGTGAGTGTCTGAGAGGTCAGTGTGTGAAGATCAGTGTTTCTTCTGAGTCTGCAGCCTCTgtttctcttctcttcatgaACAGAATCTaatctcag
>XM_043247332.1
CAGCGGAAGCGGAAGCGGAGCCTGGACCGTGTTTCTCCTGAGCGATGATGGCGGATTTTGACCAGGAGCAGGAGGATTTTCTGCGCGAGCGGCACGTGCGTTTCTTCCAGCGCTGTCTGCACGTGCTTCCCGAGAGATACGCGCCGTATGAGACCAGCAGGTTCTTCCGACTGAAGACGAATCTaatctcaAAGTTAAACTGCTCGAGTCGAGCTGTACAGTATGTGATGTGTGTGCCTGTCTCTCCGCAGGGCCCCGGGGCCCCTCACCCGTACGACAGCGGCCACGTGGCCATGACCTACACGGGACTGGCGTGTCTGCTGATCCTGGGTGATGATCTGAGCCGGGTCTGTCGAGACGCCTGTCTGAGTGGACTCCGGGCGCTGCAGCTGGAGGACGGCAGTTTCTACGCTGTTCCTGAAGGCAGTGAGAATGATATGAGGTTTGTGTACTGCGCCGCCTGCATCTGCTTCATGCTGGACGACTGGTCAGGGATGGACCGGCAGAGAGCCATCGATTACATCCGGAGGAGCACCTCGTATGACAGCGGGATCGGTCAGGGATCTGGACTGGAGTCTCACGGCGGGTCCACCTTCTGTGCCGTGGCGTCTCTGTGCATGATGGGAAAGCTGCAGGAGGTGTTCAGCGAGCGAGAGCTGAAGCGGATCCGGCGCTGGTGCATCCTCCGACAGCAGAACGGTTTCCACGGCCGGCCCAACAAACCTGTGGACACCTGCTACTCCTTCTGGGTCGGAGCCACGCTCCAGCTCTTAGACGTGTTCCAGTACACAAACTTCCAGAAGAACCGCAGCTATATTCTGTCCACTCAGGACCGGCTGGTGGGCGGCTTCGCTAAATGGCCCGACAGTCACCCAGATCCTCTCCACACGTACTTCGGTCTCTGCGGTCTGTCTCTGATGGGAGAAGCGGAGCTGAGGAAGGTTCATCCGGCTCTGAACATCAGCGAGCGAGCGTTTGAGAGTCTGCGGCAGCTGCATGGATCCTGGAGGCAGAAGAGCTCGTGACGTCTCCATTAATACGCTTCGAGAGTCAGTGTTTGATCATTAGTTTCTGCCTTACAGACCGAGGAACTCGCGCACAGACGAGCTGATCCTGGACTATTATGcactgttttttctgttttatgctttatatatatttctgtttcttattCTTTCTGTGAAATCATCGTCCTCTCTTGAATGTGCCTCAGATGTCTTTCAGATGTTTCAGTGTCTCTAAACACACAGCATCTTCACTGAAGACACTTGAATGTGTTTCAAGGatcaaataatgaaattattttttctatACTGTAATATCAAGTGTAGAAGTGACAGTCACACTGCTCGTATTTTATTATGATGTAAAGTTGAAGTGCTGAAGCGATGGACTGCGAGTGTCAATAAATGAAGAGCTTTTATCATGTCTGAGAAATAAGCAATTAAGACGCTGCTGCTGAgacatatgtatttaataaaggttaAATAAAGGAATTGAGTTTTCAACA

Function

symbol description
pggt1b Predicted to enable protein geranylgeranyltransferase activity. Predicted to contribute to CAAX-protein geranylgeranyltransferase activity. Acts upstream of or within blood vessel maturation. Predicted to be part of CAAX-protein geranylgeranyltransferase complex. Orthologous to human PGGT1B (protein geranylgeranyltransferase type I subunit beta).

NR:

description
geranylgeranyl transferase type-1 subunit beta

GO:

id name namespace
GO:0001955 blood vessel maturation biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K11713 PGTB1; geranylgeranyl transferase type-1 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
TU88575 False 538 lncRNA 0.51 2 1210815 1213009
XM_043247332.1 True 1510 mRNA 0.52 9 1211079 1218804

Neighbor

gene id symbol gene type direction distance location
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding upstream 1172 1204241 ~ 1209643 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding upstream 10878 1188348 ~ 1199937 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding upstream 23330 1185769 ~ 1187485 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding upstream 32144 1170649 ~ 1178671 (+)
sema6a LOC107661172,LOC107663594 coding upstream 81313 1069841 ~ 1129502 (+)
trim36 trim36 coding downstream 920 1219724 ~ 1235577 (+)
LOC122350095 NA coding downstream 18128 1236932 ~ 1243158 (+)
spats2 LOC107749411,LOC107701385,LOC107573793,LOC107661167,LOC107572966,LOC107728257 coding downstream 34827 1253631 ~ 1266234 (+)
LOC122350265 rasal1 coding downstream 237427 1456231 ~ 1481554 (+)
LOC122351062 NA coding downstream 340316 1559120 ~ 1560367 (+)
G59877 NA non-coding upstream 46039 1162420 ~ 1164776 (+)
G59876 NA non-coding upstream 49655 1156922 ~ 1161160 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding upstream 187901 1021192 ~ 1022914 (+)
G59814 NA non-coding upstream 234109 973486 ~ 976706 (+)
G59824 NA non-coding upstream 250644 958679 ~ 960171 (+)
G59898 NA non-coding downstream 49380 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 49634 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 173339 1392143 ~ 1393428 (+)
G59903 NA non-coding downstream 177243 1396047 ~ 1491642 (+)
G59902 dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597 non-coding downstream 182955 1401759 ~ 1494731 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 358811 842077 ~ 852004 (+)
G59807 NA other upstream 405976 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 660128 537775 ~ 550687 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 696656 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 796055 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 812020 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 818895 2037699 ~ 2039836 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 2629810 3848614 ~ 3850557 (+)

Expression


Co-expression Network