LOC122350095


Basic Information

Item Value
gene id LOC122350095
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1236932 ~ 1243158 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246299.1
CCTGCTCGTCATCACGCGCTGATTTTAATTCCTCCGTTAATTCTTGGTTGAGTTCAGGGAAACCCGCTGTGGAGAACTAGTGAACGAGTGCTAGTTAACGCGCGCTAATCTGCTGAAGTCTGTCTGCACTGATCCAAGAAGAGAAAGTGTTTGATTATACGAGATAAAACTTACTTCAGACACAGACAAGTCAAGAATATAACGTTAAACCGCGACGAGTTTTCTTTCAGAGGGATCCGTCATAACACCGAAGTAAACGATTAACGTTATGCGTTTATTTCGATGTTTATGGATTTTGACGTCTGTGATTGGTCGTTGATCCGATCTGCGCTGATCACGTATAGATCAAGCGTCATCCACAAACCCTGAAGAACAGATGCCCTGATTAACTGTTGGTCCTGGAAACATGGacaCTTCTGAACACATCTGCACTAAACTAAGAATTTGAAACACATCCATTCTGTCTTCATCAGCATGATGAACGAGTCTGTATCTGAATCCAGAGTCGTCTGCTCTCTGGAGATCAGGAGAGAATACGAGCTCTTTCCAGCTGTTACCTGCTCGCTCTGCTTCGCTCTGGGTCTCGTTTACTGTTTCTGTGGTTGCCGCTGTTTCAGGACAGTGCTGCTGGTGTCGGGGCTGGTGTCCGGCTGCGCTCTGGGtcagctgctgtgtgtgtgggagtgtgtgctGGAGCTCCGGGCGCAGGCGGGGGTTTCTCTGGGCCTGGGTCTGCTGGGGGCGCTGCTGGCGGTGCAGGTACGGAGCGTGGGGCTGTTCCTCAGTGGCCTGCTGTTGGGAGCCCTGCTCTCCGGCGCcgctctgctgctgctgggcCAGTATTACCCCGTGCTCAGCCCGCCCTGGGCCCCGGTCAGTGCCGTCACCGGAACCAGCCTGCTCTTCGCTCTCCTCGCTCTGCGCTGGAGGAGGCCCGTGACGGTCGCTCTGACAACGGCCCTCGGGGCGGCGGTGGCCCTCGGGTGTGTGGATTACTGGCTGGAGACGCCCATGTTACTGCTGCGAGTGTATGAGGGTCTGCAGAGACAACAGGGCCTGTGCTGGTCCAGCTGGGCGGTCATCGGGGCCTGGCCCCTACTCACAGCCCTGGGAACACTGGTCCAGTACAGCATCATCAGTGACGAAGCCCTACAGAGAAAGCAGTGTGTGACGGGGAACCAGAAGCGTTTGGATCCGATGCGGATCAGACAGAAGCGTGAGCGCAGACCCCCGGCTCTTCAGCGCTACGCCGGAGACGTTCTGGCCCCGAGTTATCTGGCCAGTCTCCGAGAGCGGCAGTCTCACACGGGCTCCTCGCTCTGGAGTCTGAGCTCCGTTCATCACACCGTCATCGACTTTGACTCTGAGACGGGATCGCTGGTGCCGCTCACCACCTCGGCTTCGGCTCTGCTCAGACTCTAGAGACATCAGGT

Function

GO:

id name namespace
GO:0032838 plasma membrane bounded cell projection cytoplasm cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005930 axoneme cellular_component
GO:0099568 cytoplasmic region cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0097014 ciliary plasm cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246299.1 True 1433 mRNA 0.56 6 1236932 1243158

Neighbor

gene id symbol gene type direction distance location
trim36 trim36 coding upstream 1355 1219724 ~ 1235577 (+)
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding upstream 27289 1204241 ~ 1209643 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding upstream 36995 1188348 ~ 1199937 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding upstream 49447 1185769 ~ 1187485 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding upstream 58261 1170649 ~ 1178671 (+)
spats2 LOC107749411,LOC107701385,LOC107573793,LOC107661167,LOC107572966,LOC107728257 coding downstream 10473 1253631 ~ 1266234 (+)
LOC122350265 rasal1 coding downstream 213073 1456231 ~ 1481554 (+)
LOC122351062 NA coding downstream 315962 1559120 ~ 1560367 (+)
LOC122350660 NA coding downstream 405320 1648478 ~ 1649618 (+)
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding downstream 559537 1802695 ~ 1807402 (+)
G59877 NA non-coding upstream 72156 1162420 ~ 1164776 (+)
G59876 NA non-coding upstream 75772 1156922 ~ 1161160 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding upstream 214018 1021192 ~ 1022914 (+)
G59814 NA non-coding upstream 260226 973486 ~ 976706 (+)
G59824 NA non-coding upstream 276761 958679 ~ 960171 (+)
G59898 NA non-coding downstream 25026 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 25280 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 148985 1392143 ~ 1393428 (+)
G59903 NA non-coding downstream 152889 1396047 ~ 1491642 (+)
G59902 dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597 non-coding downstream 158601 1401759 ~ 1494731 (+)
pggt1b pggt1b other upstream 18128 1210815 ~ 1218804 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 384928 842077 ~ 852004 (+)
G59807 NA other upstream 432093 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 686245 537775 ~ 550687 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 672302 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 771701 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 787666 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 794541 2037699 ~ 2039836 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 2605456 3848614 ~ 3850557 (+)

Expression


Co-expression Network