LOC122350068 (ccdc112,LOC107573794,LOC107578772)


Basic Information

Item Value
gene id LOC122350068
gene name ccdc112,LOC107573794,LOC107578772
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1204241 ~ 1209643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246262.1
tattttattaggtttATTTCTGATGATGAGAAACAGACAAACGCAGactcaacatatatatatttatatatataacaaattataaagTGCTCTTAAATCTGAATAaagtttttcattgtttatataatattgttataaCGTTAGTGTTTTTTATTCGTAAGCCAACTGTAAATGTTTCAACAATGATTTCGTTAATAGCattcattttgaagcagttaattatttaaagagtgattcaattaattattcatttatcataACATTTTAGTGATAACAATTATTCTGATACTAATACGCTGATGTTGAATAATTACGcgagttaaataaataaatacactatatTTCGTGTTAAATCAGTAAAGTTACTTTCAGTAACAGTCACTAAAGAGGATCCGGCGTCTACCGGAAGTTGTGGGACGTCGTTACCATAGCAACGGTTCAAAAACAAAGTCGGTTGATGTGATACTTCTCGCTGCGTCTGATTAACGATTATTACAGCTGTGGCGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATCGTGTGTGGTTTTGCGTCTCGCTTCGACCAGATGTCTGTGGCGGGATTTCTGCGGGAAGCGGAAGCTCTCAGGAGACTAGTGTgtaaagaggagagagagacggagaggcGCGCGCTCAGAGACCCTTCCGGCGCGCTCCGGGATCACGTGAACGCGCAGCGCGAGGCGGACATCATGAAAGTTCAGCAGCAGCTGCAGAAACTCAAGAACGGCGTCTTCAGGTTCCAGGAGCAGCTGATGGATGTCAGACCTTCTCCAGACGTGGTTGACAAATTACGAGAGACCATGAGTGACATTGAGAACTCCATCAGCGCTTTCAAAGACAGCCAGCACCAGAGCTTCGAGGAGCTCCTGAAGGACGAGAGGAGCGTGTGGCAGGAGATCTGCGTGGTCCAGAAGAAGATGGAGTCCTGGAGCGTGTCTGTGAGAGCCGAGGCCGGCGGCCGTCGCTCAGAGAAGCCCAGGTCCTGGACGAGTCTCCCGGCCGAGGTGAGCGCTCTCCAGACCTTCCTCCAGCGGACGGGCCGAGACGGCGGCTGGGACCCCTTCGACCACCGCAGCTTCCTGAAGGTGTGGACCAAGCACCGAGGAAAGCCCTCGTACAGACGAGAAGCACGGCTTTATTTACCGGAGAAGACGGAGGAGGAGCTGAAGAAGCACGAGGACTGGTTTCTGGAGCTGCGCCGGCTTCAGGACGACAAGAGAGAGGCCATCCGTCGATGGAGAGCGTGGAAGCAGACGGAGCGGGAGCAGCGTGACGGAGACGAGGAGccggaggaggaggaagaggagcgggatcaggaggacgaggaggagcgCCGCAGGGAGCTGTCCGAGCGTCTGGAGGTCTGGAGGAGACACCGAACACAGCAGAGAGAGCGGCAGCAGGAGCAGAGCCTCAGACAGCAGATCCTGGAGAGCAGGAGAGCTAAAGAGCAGCGCCGCAGACAGCTGGAGCTCAAGCTGCTCGTGGAGGAGCGCCTCCAGCAGAAGAAGGAGCAGGAGGAGCGGCGTCTGCTGGAGCGGGAGGCGCAGGAGCAGGCGGAGAGACAGGAGCGGCAGCGGCAGGCCGTCCTCGGCATCAGACGCTTCCAGCAGAGAGTGAGAGGAGCTTGTGTGTTTGAGAGCCGCTCTCCGCTCTCCGTCACTcactccgtctctctctctctcgtcagGATTCACGCCGGCTCGAGGAGAAACTACAGGAGAAGAAGACTAAAGAGCAGGAGCAGAGCGAGAGGCACAGGGCACTCCAGAAGATCAAGGACAAGGTTCACATCGACCGGGATCCGTCTCGACTCTGGAAGCTCACTAAAGCGTGGCAGGAGCGCACTAAAGAGACGGGGCCCTCGGGGACCGGGGCCGTGTCTCAGATCTTCCACAGAGCTGTTCCAGCGTGGAGACAAGACTCCTGAAAGATCTACTGCTTCAGACTCAAACTGCAGAGTGAATGAAGTTTCTCTAGAGGCgccattaaagttttattctAGTGATGTTCTGTTCAGCACCGAAGATCCAGAGATTgaatcaaaaacaaactgaagcGTGTTAAGATTAGTTTTGCCAAAAACACAAGAtcttattatcaatagaaataatcaGCCCAGATTATTTAGTGTTACAGTAGTGATGCACAGATCATGGCtgatttaaatttagtttttattattattattattattattattattaataaaaactttttgttttttgttgattgtataataaatagaaaagaacacaa
>XM_043246263.1
agttaaataaataaatacactatatTTCGTGTTAAATCAGTAAAGTTACTTTCAGTAACAGTCACTAAAGAGGATCCGGCGTCTACCGGAAGTTGTGGGACGTCGTTACCATAGCAACGGTTCAAAAACAAAGTCGGTTGATGTGATACTTCTCGCTGCGTCTGATTAACGATTATTACAGCTGTGGCGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATCGTGTGTGGTTTTGCGTCTCGCTTCGACCAGATGTCTGTGGCGGGATTTCTGCGGGAAGCGGAAGCTCTCAGGAGACTTCATGAAAGTTCAGCAGCAGCTGCAGAAACTCAAGAACGGCGTCTTCAGGTTCCAGGAGCAGCTGATGGATGTCAGACCTTCTCCAGACGTGGTTGACAAATTACGAGAGACCATGAGTGACATTGAGAACTCCATCAGCGCTTTCAAAGACAGCCAGCACCAGAGCTTCGAGGAGCTCCTGAAGGACGAGAGGAGCGTGTGGCAGGAGATCTGCGTGGTCCAGAAGAAGATGGAGTCCTGGAGCGTGTCTGTGAGAGCCGAGGCCGGCGGCCGTCGCTCAGAGAAGCCCAGGTCCTGGACGAGTCTCCCGGCCGAGGTGAGCGCTCTCCAGACCTTCCTCCAGCGGACGGGCCGAGACGGCGGCTGGGACCCCTTCGACCACCGCAGCTTCCTGAAGGTGTGGACCAAGCACCGAGGAAAGCCCTCGTACAGACGAGAAGCACGGCTTTATTTACCGGAGAAGACGGAGGAGGAGCTGAAGAAGCACGAGGACTGGTTTCTGGAGCTGCGCCGGCTTCAGGACGACAAGAGAGAGGCCATCCGTCGATGGAGAGCGTGGAAGCAGACGGAGCGGGAGCAGCGTGACGGAGACGAGGAGccggaggaggaggaagaggagcgggatcaggaggacgaggaggagcgCCGCAGGGAGCTGTCCGAGCGTCTGGAGGTCTGGAGGAGACACCGAACACAGCAGAGAGAGCGGCAGCAGGAGCAGAGCCTCAGACAGCAGATCCTGGAGAGCAGGAGAGCTAAAGAGCAGCGCCGCAGACAGCTGGAGCTCAAGCTGCTCGTGGAGGAGCGCCTCCAGCAGAAGAAGGAGCAGGAGGAGCGGCGTCTGCTGGAGCGGGAGGCGCAGGAGCAGGCGGAGAGACAGGAGCGGCAGCGGCAGGCCGTCCTCGGCATCAGACGCTTCCAGCAGAGAGTGAGAGGAGCTTGTGTGTTTGAGAGCCGCTCTCCGCTCTCCGTCACTcactccgtctctctctctctcgtcagGATTCACGCCGGCTCGAGGAGAAACTACAGGAGAAGAAGACTAAAGAGCAGGAGCAGAGCGAGAGGCACAGGGCACTCCAGAAGATCAAGGACAAGGTTCACATCGACCGGGATCCGTCTCGACTCTGGAAGCTCACTAAAGCGTGGCAGGAGCGCACTAAAGAGACGGGGCCCTCGGGGACCGGGGCCGTGTCTCAGATCTTCCACAGAGCTGTTCCAGCGTGGAGACAAGACTCCTGAAAGATCTACTGCTTCAGACTCAAACTGCAGAGTGAATGAAGTTTCTCTAGAGGCgccattaaagttttattctAGTGATGTTCTGTTCAGCACCGAAGATCCAGAGATTgaatcaaaaacaaactgaagcGTGTTAAGATTAGTTTTGCCAAAAACACAAGAtcttattatcaatagaaataatcaGCCCAGATTATTTAGTGTTACAGTAGTGATGCACAGATCATGGCtgatttaaatttagtttttattattattattattattattattattaataaaaactttttgttttttgttgattgtataataaatagaaaagaacacaa
>XM_043246264.1
ttaaataaataaatacactatatTTCGTGTTAAATCAGTAAAGTTACTTTCAGTAACAGTCACTAAAGAGGATCCGGCGTCTACCGGAAGTTGTGGGACGTCGTTACCATAGCAACGGTTCAAAAACAAAGTCGGTTGATGTGATACTTCTCGCTGCGTCTGATTAACGATTATTACAGCTGTGGCGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATCGTGTGTGGTTTTGCGTCTCGCTTCGACCAGATGTCTGTGGCGGGATTTCTGCGGGAAGCGGAAGCTCTCAGGAGACTAGTGTgtaaagaggagagagagacggagaggcGCGCGCTCAGAGACCCTTCCGGCGCGCTCCGGGATCACGTGAACGCGCAGCGCGAGGCGGACATCATGAAAGTTCAGCAGCAGCTGCAGAAACTCAAGAACGGCGTCTTCAGGTTCCAGGAGCAGCTGATGGATGTCAGACCTTCTCCAGACGTGGTTGACAAATTACGAGAGACCATGAGTGACATTGAGAACTCCATCAGCGCTTTCAAAGACAGCCAGCACCAGAGCTTCGAGGAGCTCCTGAAGGACGAGAGGAGCGTGTGGCAGGAGATCTGCGTGGTCCAGAAGAAGATGGAGTCCTGGAGCGTGTCTGTGAGAGCCGAGGCCGGCGGCCGTCGCTCAGAGAAGCCCAGGTCCTGGACGAGTCTCCCGGCCGAGGTGAGCGCTCTCCAGACCTTCCTCCAGCGGACGGGCCGAGACGGCGGCTGGGACCCCTTCGACCACCGCAGCTTCCTGAAGGTGTGGACCAAGCACCGAGGAAAGCCCTCGTACAGACGAGAAGCACGGCTTTATTTACCGGAGAAGACGGAGGAGGAGCTGAAGAAGCACGAGGACTGGTTTCTGGAGCTGCGCCGGCTTCAGGACGACAAGAGAGAGGCCATCCGTCGATGGAGAGCGTGGAAGCAGACGGAGCGGGAGCAGCGTGACGGAGACGAGGAGccggaggaggaggaagaggagcgggatcaggaggacgaggaggagcgCCGCAGGGAGCTGTCCGAGCGTCTGGAGGTCTGGAGGAGACACCGAACACAGCAGAGAGAGCGGCAGCAGGAGCAGAGCCTCAGACAGCAGATCCTGGAGAGCAGGAGAGCTAAAGAGCAGCGCCGCAGACAGCTGGAGCTCAAGCTGCTCGTGGAGGAGCGCCTCCAGCAGAAGAAGGAGCAGGAGGAGCGGCGTCTGCTGGAGCGGGAGGCGCAGGAGCAGGCGGAGAGACAGGAGCGGCAGCGGCAGGCCGTCCTCGGCATCAGACGCTTCCAGCAGAGAGATTCACGCCGGCTCGAGGAGAAACTACAGGAGAAGAAGACTAAAGAGCAGGAGCAGAGCGAGAGGCACAGGGCACTCCAGAAGATCAAGGACAAGGTTCACATCGACCGGGATCCGTCTCGACTCTGGAAGCTCACTAAAGCGTGGCAGGAGCGCACTAAAGAGACGGGGCCCTCGGGGACCGGGGCCGTGTCTCAGATCTTCCACAGAGCTGTTCCAGCGTGGAGACAAGACTCCTGAAAGATCTACTGCTTCAGACTCAAACTGCAGAGTGAATGAAGTTTCTCTAGAGGCgccattaaagttttattctAGTGATGTTCTGTTCAGCACCGAAGATCCAGAGATTgaatcaaaaacaaactgaagcGTGTTA

Function

symbol description
ccdc112 Orthologous to human CCDC112 (coiled-coil domain containing 112).

NR:

description
PREDICTED: coiled-coil domain-containing protein 112

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246262.1 True 2405 mRNA 0.48 8 1204241 1209643
XM_043246263.1 False 1993 mRNA 0.52 7 1204558 1209643
XM_043246264.1 False 1819 mRNA 0.55 9 1204560 1209450

Neighbor

gene id symbol gene type direction distance location
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding upstream 4304 1188348 ~ 1199937 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding upstream 16756 1185769 ~ 1187485 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding upstream 25570 1170649 ~ 1178671 (+)
sema6a LOC107661172,LOC107663594 coding upstream 74739 1069841 ~ 1129502 (+)
hsd17b4 hsd17b4 coding upstream 187676 1005559 ~ 1016565 (+)
trim36 trim36 coding downstream 10081 1219724 ~ 1235577 (+)
LOC122350095 NA coding downstream 27289 1236932 ~ 1243158 (+)
spats2 LOC107749411,LOC107701385,LOC107573793,LOC107661167,LOC107572966,LOC107728257 coding downstream 43988 1253631 ~ 1266234 (+)
LOC122350265 rasal1 coding downstream 246588 1456231 ~ 1481554 (+)
LOC122351062 NA coding downstream 349477 1559120 ~ 1560367 (+)
G59877 NA non-coding upstream 39465 1162420 ~ 1164776 (+)
G59876 NA non-coding upstream 43081 1156922 ~ 1161160 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding upstream 181327 1021192 ~ 1022914 (+)
G59814 NA non-coding upstream 227535 973486 ~ 976706 (+)
G59824 NA non-coding upstream 244070 958679 ~ 960171 (+)
G59898 NA non-coding downstream 58541 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 58795 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 182500 1392143 ~ 1393428 (+)
G59903 NA non-coding downstream 186404 1396047 ~ 1491642 (+)
G59902 dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597 non-coding downstream 192116 1401759 ~ 1494731 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 352237 842077 ~ 852004 (+)
G59807 NA other upstream 399402 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 653554 537775 ~ 550687 (+)
pggt1b pggt1b other downstream 1172 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 705817 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 805216 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 821181 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 828056 2037699 ~ 2039836 (+)

Expression


Co-expression Network