RNA id: XM_043246263.1


Basic Information

Item Value
RNA id XM_043246263.1
length 1993
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC122350068
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1204241 ~ 1209643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttaaataaataaatacactatatTTCGTGTTAAATCAGTAAAGTTACTTTCAGTAACAGTCACTAAAGAGGATCCGGCGTCTACCGGAAGTTGTGGGACGTCGTTACCATAGCAACGGTTCAAAAACAAAGTCGGTTGATGTGATACTTCTCGCTGCGTCTGATTAACGATTATTACAGCTGTGGCGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATGATTTATTAGAGATGTGCTCGTGACGTTATCGTGTGTGGTTTTGCGTCTCGCTTCGACCAGATGTCTGTGGCGGGATTTCTGCGGGAAGCGGAAGCTCTCAGGAGACTTCATGAAAGTTCAGCAGCAGCTGCAGAAACTCAAGAACGGCGTCTTCAGGTTCCAGGAGCAGCTGATGGATGTCAGACCTTCTCCAGACGTGGTTGACAAATTACGAGAGACCATGAGTGACATTGAGAACTCCATCAGCGCTTTCAAAGACAGCCAGCACCAGAGCTTCGAGGAGCTCCTGAAGGACGAGAGGAGCGTGTGGCAGGAGATCTGCGTGGTCCAGAAGAAGATGGAGTCCTGGAGCGTGTCTGTGAGAGCCGAGGCCGGCGGCCGTCGCTCAGAGAAGCCCAGGTCCTGGACGAGTCTCCCGGCCGAGGTGAGCGCTCTCCAGACCTTCCTCCAGCGGACGGGCCGAGACGGCGGCTGGGACCCCTTCGACCACCGCAGCTTCCTGAAGGTGTGGACCAAGCACCGAGGAAAGCCCTCGTACAGACGAGAAGCACGGCTTTATTTACCGGAGAAGACGGAGGAGGAGCTGAAGAAGCACGAGGACTGGTTTCTGGAGCTGCGCCGGCTTCAGGACGACAAGAGAGAGGCCATCCGTCGATGGAGAGCGTGGAAGCAGACGGAGCGGGAGCAGCGTGACGGAGACGAGGAGccggaggaggaggaagaggagcgggatcaggaggacgaggaggagcgCCGCAGGGAGCTGTCCGAGCGTCTGGAGGTCTGGAGGAGACACCGAACACAGCAGAGAGAGCGGCAGCAGGAGCAGAGCCTCAGACAGCAGATCCTGGAGAGCAGGAGAGCTAAAGAGCAGCGCCGCAGACAGCTGGAGCTCAAGCTGCTCGTGGAGGAGCGCCTCCAGCAGAAGAAGGAGCAGGAGGAGCGGCGTCTGCTGGAGCGGGAGGCGCAGGAGCAGGCGGAGAGACAGGAGCGGCAGCGGCAGGCCGTCCTCGGCATCAGACGCTTCCAGCAGAGAGTGAGAGGAGCTTGTGTGTTTGAGAGCCGCTCTCCGCTCTCCGTCACTcactccgtctctctctctctcgtcagGATTCACGCCGGCTCGAGGAGAAACTACAGGAGAAGAAGACTAAAGAGCAGGAGCAGAGCGAGAGGCACAGGGCACTCCAGAAGATCAAGGACAAGGTTCACATCGACCGGGATCCGTCTCGACTCTGGAAGCTCACTAAAGCGTGGCAGGAGCGCACTAAAGAGACGGGGCCCTCGGGGACCGGGGCCGTGTCTCAGATCTTCCACAGAGCTGTTCCAGCGTGGAGACAAGACTCCTGAAAGATCTACTGCTTCAGACTCAAACTGCAGAGTGAATGAAGTTTCTCTAGAGGCgccattaaagttttattctAGTGATGTTCTGTTCAGCACCGAAGATCCAGAGATTgaatcaaaaacaaactgaagcGTGTTAAGATTAGTTTTGCCAAAAACACAAGAtcttattatcaatagaaataatcaGCCCAGATTATTTAGTGTTACAGTAGTGATGCACAGATCATGGCtgatttaaatttagtttttattattattattattattattattattaataaaaactttttgttttttgttgattgtataataaatagaaaagaacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88551 lncRNA upstream 39782 1162420 ~ 1164776 (+) True G59877
TU88549 lncRNA upstream 43398 1156922 ~ 1161160 (+) True G59876
TU88548 lncRNA upstream 43629 1159946 ~ 1160929 (+) False G59876
TU88509 lncRNA upstream 181644 1021192 ~ 1022914 (+) True G59845
TU88461 lncRNA upstream 227852 973486 ~ 976706 (+) True G59814
TU88575 lncRNA downstream 1172 1210815 ~ 1213009 (+) False pggt1b
TU88590 lncRNA downstream 58541 1268184 ~ 1268392 (+) True G59898
TU88591 lncRNA downstream 58795 1268438 ~ 1268674 (+) True G59899
TU88634 lncRNA downstream 182500 1392143 ~ 1393428 (+) True G59914
TU88600 lncRNA downstream 186404 1396047 ~ 1489391 (+) False G59903
XM_043247265.1 mRNA upstream 4621 1188348 ~ 1199937 (+) True LOC122350615
XM_043247331.1 mRNA upstream 17073 1185769 ~ 1187485 (+) True tmed7
XM_043247377.1 mRNA upstream 25887 1170649 ~ 1178671 (+) False cdo1
XM_043247376.1 mRNA upstream 25887 1170650 ~ 1178671 (+) True cdo1
XM_043246766.1 mRNA upstream 75056 1069841 ~ 1129502 (+) True sema6a
XM_043247332.1 mRNA downstream 1436 1211079 ~ 1218804 (+) True pggt1b
XM_043247718.1 mRNA downstream 10081 1219724 ~ 1235577 (+) True trim36
XM_043247722.1 mRNA downstream 10082 1219725 ~ 1235577 (+) False trim36
XM_043247720.1 mRNA downstream 10082 1219725 ~ 1235577 (+) False trim36
XM_043247719.1 mRNA downstream 11189 1220832 ~ 1235577 (+) False trim36
XR_006251599.1 other upstream 352554 842077 ~ 852004 (+) True znf608
TU88420 other upstream 399719 803653 ~ 804839 (+) True G59807
TU88285 other upstream 664492 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 705817 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 805237 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 821235 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 824249 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 828109 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile