RNA id: TU89218


Basic Information

Item Value
RNA id TU89218
length 621
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC122350758
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2037699 ~ 2039836 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTCAAGCACACAGCGGGAGCATCTCAGGCGCTGCGAGCGAGTCGCGTTTCTCTCCGTCTCAACAAATCTGCACAGAAATAAGATCCAGCATGTCGGACAGAAAGGCAGTCATCAAAAATGCGGACATGTCTGAGGAGATGCAGCAGGACGCTGTGGAGTGTGCAACACAGGCGCTCGAGAAGTACAACATCGAGAAGGACATCGCCGCCTACATCAAGAAGGAGTTCGACAAAAAGTACAATCCCACCTGGCACTGCATCGTGGGGAGGAACTTCGGCAGTTACGTGACTCACGAGACCAAACATTTCATCTACTTCTACCTGGGTCAGGTGGCCATCCTGCTCTTCAAATCGGGCTGAgcgacggcacccatccatTTCAACAGACCATTACGAACTGACTGTACTGACAAGGCGAACCATTCCTGCACTGGGACCTGCCTTCCTTCTCTCGGCTGCTTCTCCTTTCGTTCTGATTATTGTTTAGAAAAAGCCCGTGTGAGAGGAAAATGCCATAAAGAAacacttgtatttatttttgttttctatacaCGGTTTGAGCGTTTTATGTCACCcgcgtttttttttattaaagcaaaatggTTTGGCCGTTTGCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251573.1 lncRNA upstream 10424 2024562 ~ 2027328 (+) True LOC122350140
TU89214 lncRNA upstream 10494 2024812 ~ 2027258 (+) False LOC122350140
TU89213 lncRNA upstream 17718 2018397 ~ 2020034 (+) False polb
TU89197 lncRNA upstream 34749 2000761 ~ 2003003 (+) True G60288
TU89187 lncRNA upstream 38284 1979786 ~ 1999468 (+) True G60281
TU89180 lncRNA downstream 1666 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA downstream 1666 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA downstream 1666 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA downstream 1666 2041502 ~ 2044650 (+) False G60279
TU89185 lncRNA downstream 1666 2041502 ~ 2042464 (+) False G60279
XM_043246237.1 mRNA upstream 3380 2030824 ~ 2034372 (+) False LOC122350053
XM_043246854.1 mRNA upstream 17718 2014859 ~ 2020034 (+) True polb
XM_043246853.1 mRNA upstream 23068 2006084 ~ 2014684 (+) True enkd1
XM_043246852.1 mRNA upstream 23068 2008598 ~ 2014684 (+) False enkd1
XM_043247683.1 mRNA upstream 41893 1966583 ~ 1995859 (+) False ikbkb
XM_043247567.1 mRNA downstream 15495 2055331 ~ 2058725 (+) False mrpl40
XM_043247566.1 mRNA downstream 15496 2055332 ~ 2058725 (+) True mrpl40
XM_043247582.1 mRNA downstream 21705 2061541 ~ 2069288 (+) True gle1
XM_043247302.1 mRNA downstream 29982 2069818 ~ 2071669 (+) True si:ch211-51h9.7
XM_043246917.1 mRNA downstream 56323 2096159 ~ 2103906 (+) True naif1
TU89217 other upstream 1772 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 4689 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 20232 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 119381 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1185748 842077 ~ 852004 (+) True znf608
TU89939 other downstream 1808778 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1885025 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 2008783 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 3064734 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 3064734 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU77386 True 618 TUCP 0.47 3 CI01000010 11928961 ~ 11932254 (-)
rainbow trout (Oncorhynchus mykiss) TU77386 True 800 lncRNA 0.54 1 NC_048565.1 63078898 ~ 63079697 (-)
mexican tetra (Astyanax mexicanus) TU76140 False 1101 lncRNA 0.42 3 NC_035902.1 35276094 ~ 35279120 (+)
mexican tetra (Astyanax mexicanus) TU77386 False 768 lncRNA 0.54 3 NC_035902.1 38261772 ~ 38305314 (-)