RNA id: XM_043246854.1


Basic Information

Item Value
RNA id XM_043246854.1
length 1564
RNA type mRNA
GC content 0.46
exon number 14
gene id polb
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2014859 ~ 2020034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAGGCCCCGCCCATTGTGCGGCTACTGTGCTAATGCTAAGGCTTTGTCCTGTAGAGTCGGACACTGACTCGGCTGTGGTCTTGAATGGTGgaaagtgaaaaacaaacacgTCTATCTACACCTATTTTAAATTACTCTCAACAATGAGCAAAAGAAAAGCGCCACAGGAAAGTCTGAACGAGGGAATCACAGATTTTCTCATCGAATTGGCAAATTATGAGAGAAATGTCAACAGAGCCATTCATAAATACAATGCTTACAGaaaagCAGCGTCTGTAATCGCCAAATACCCTCAAAAGATCAAAAGCGGGACAGAAGCAAAGAAACTGGATGGAGTTGGTGCAAAGATAGCAGAGAAAATCGACGAGTTTTTAGCGACAGGAAAACTGCGTAAGCTGGAAAAGatTCGCAACGACGACACAAGCTCCTCCATCAACTTCTTGACCCGAGTGACTGGGATCGGCCCCGCTGCGGCCAGGAAGTTTTTTGATGAAGGCGTCAAAAACTTGGAAGATCTGAAGAAGATCGAGCACAAACTTAACCATCATCAGCAGATTGGGTTAAAGTACTTTGAAGAGTTTGAGAAGAGAATCCCTCGTGCAGAAATGCAGAAGATGGAGGCTCTGATACTGAAGGAGCTGGATCTGGTGGACCCCGAGTACATCGGCACCATCTGCGGCAGCTACAGAAGAGGGGCGGAGTCGAGTGGTGATATTGATATACTGCTGACCCACCCGGACTTCACCTCTCAGTCTGAGAAGCAGCCCAAACTCCTTCATGCTGTCGTGGATCATCTGGAGTCCATCGGCTTCATCACCGACACGCTTTCTAAAGGAGACACTAAGTTTATGGGGGTGTGTCAGCTGCagaaagaagaggaagatgaagaagagAATAATATTGacatCAGGCTTATCCCGAAGGATCAGTATTACTGCGGCGTGCTGTACTTCACTGGAAGCGATATCTTCAACAAGAACATGAGGACTCATGCCCTGGAGAAGGGCTTCACTCTCAACGAGTACACCATCCGTCCACTGGGCGTCACTGGCGTGGCTGGAGAGCCTCTGCTGGTGGACAGCGAGAAGGACATCTTCGACTACATCCAGTGGAAATACAGAGAACCGAAGGACCGCAGCGAGTGAAACCAAGACGGGAGACTAAAGCCAAGCTCGAGCTGCGCGTGTGCTGTTCGTTTAGGTCAAGAGACTGTATTTTAAGAGTAGAAGACGTGCGTGTGTTTAAGTTGTGAAAGCAGCTACGTGACAGTAGTtgatggtgcttttttttttatcattgataGCCATGCAtaatatgtgttttaaaatcagGAGTGAGGCGAGAGGAAGTAACGGCATGTTAATGAAATTTCTGAAGTGTAGCGGCAAACGTGTCTTTATTTCAAGAACttgcaagaaaacaaaatgggAAAATAATTGAACGGTGACCGTCTGCGgttgtgttatttaaaatcaatgacGACGTTATtgggatatttttatttagataatagTCTGTTTGCGTGAACATGTGGATTCTGCATTAAAAATCCCACAAATCGG

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006284 base-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K02330 POLB; DNA polymerase beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89197 lncRNA upstream 11856 2000761 ~ 2003003 (+) True G60288
TU89188 lncRNA upstream 15391 1967120 ~ 1999468 (+) False G60281
TU89187 lncRNA upstream 15391 1979786 ~ 1999468 (+) True G60281
TU89189 lncRNA upstream 15391 1996448 ~ 1999468 (+) False G60281
TU89166 lncRNA upstream 61733 1952793 ~ 1953126 (+) True G60269
XR_006251573.1 lncRNA downstream 4528 2024562 ~ 2027328 (+) True LOC122350140
TU89214 lncRNA downstream 4778 2024812 ~ 2027258 (+) False LOC122350140
TU89180 lncRNA downstream 21468 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA downstream 21468 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA downstream 21468 2041502 ~ 2044650 (+) False G60279
XM_043246853.1 mRNA upstream 175 2006084 ~ 2014684 (+) True enkd1
XM_043246852.1 mRNA upstream 175 2008598 ~ 2014684 (+) False enkd1
XM_043247683.1 mRNA upstream 19000 1966583 ~ 1995859 (+) False ikbkb
XM_043247684.1 mRNA upstream 19000 1967657 ~ 1995859 (+) True ikbkb
XM_043247050.1 mRNA upstream 67910 1941657 ~ 1946949 (+) False LOC122350512
XM_043246237.1 mRNA downstream 10790 2030824 ~ 2034372 (+) False LOC122350053
XM_043247450.1 mRNA downstream 17665 2037699 ~ 2039825 (+) True LOC122350758
XM_043247567.1 mRNA downstream 35297 2055331 ~ 2058725 (+) False mrpl40
XM_043247566.1 mRNA downstream 35298 2055332 ~ 2058725 (+) True mrpl40
XM_043247582.1 mRNA downstream 41507 2061541 ~ 2069288 (+) True gle1
TU89150 other upstream 96488 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1162855 842077 ~ 852004 (+) True znf608
TU88420 other upstream 1210020 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1474793 537794 ~ 540066 (+) False cdc14b
TU89216 other downstream 10844 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 13858 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 17718 2037752 ~ 2039836 (+) False LOC122350758
TU89939 other downstream 1828580 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1904827 3924861 ~ 3931488 (+) False LOC122350109

Expression Profile