LOC122350758 (dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583)


Basic Information

Item Value
gene id LOC122350758
gene name dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2037699 ~ 2039836 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89218
TGGTCAAGCACACAGCGGGAGCATCTCAGGCGCTGCGAGCGAGTCGCGTTTCTCTCCGTCTCAACAAATCTGCACAGAAATAAGATCCAGCATGTCGGACAGAAAGGCAGTCATCAAAAATGCGGACATGTCTGAGGAGATGCAGCAGGACGCTGTGGAGTGTGCAACACAGGCGCTCGAGAAGTACAACATCGAGAAGGACATCGCCGCCTACATCAAGAAGGAGTTCGACAAAAAGTACAATCCCACCTGGCACTGCATCGTGGGGAGGAACTTCGGCAGTTACGTGACTCACGAGACCAAACATTTCATCTACTTCTACCTGGGTCAGGTGGCCATCCTGCTCTTCAAATCGGGCTGAgcgacggcacccatccatTTCAACAGACCATTACGAACTGACTGTACTGACAAGGCGAACCATTCCTGCACTGGGACCTGCCTTCCTTCTCTCGGCTGCTTCTCCTTTCGTTCTGATTATTGTTTAGAAAAAGCCCGTGTGAGAGGAAAATGCCATAAAGAAacacttgtatttatttttgttttctatacaCGGTTTGAGCGTTTTATGTCACCcgcgtttttttttattaaagcaaaatggTTTGGCCGTTTGCCTGG
>XM_043247450.1
ATGCTAAGCGAGAGGGGGAGGAGCCAACGGCGGTCGCACACCTACATTGCTTTTGGTCAAGCACACAGCGGGAGCATCTCAGGCGCTGCGAGCGAGTCGCGTTTCTCTCCGTCTCAACAAATCTGCACAGAAATAAGATCCAGCATGTCGGACAGAAAGGCAGTCATCAAAAATGCGGACATGTCTGAGGAGATGCAGCAGGACGCTGTGGAGTGTGCAACACAGGCGCTCGAGAAGTACAACATCGAGAAGGACATCGCCGCCTACATCAAGAAGGAGTTCGACAAAAAGTACAATCCCACCTGGCACTGCATCGTGGGGAGGAACTTCGGCAGTTACGTGACTCACGAGACCAAACATTTCATCTACTTCTACCTGGGTCAGGTGGCCATCCTGCTCTTCAAATCGGGCTGAgcgacggcacccatccatTTCAACAGACCATTACGAACTGACTGTACTGACAAGGCGAACCATTCCTGCACTGGGACCTGCCTTCCTTCTCTCGGCTGCTTCTCCTTTCGTTCTGATTATTGTTTAGAAAAAGCCCGTGTGAGAGGAAAATGCCATAAAGAAacacttgtatttatttttgttttctatacaCGGTTTGAGCGTTTTATGTCACCcgcgtttttttttattaaagcaaaatggTTTGGC

Function

symbol description
dynll1 Predicted to enable dynein intermediate chain binding activity and dynein light intermediate chain binding activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoplasm and microtubule. Predicted to be part of cytoplasmic dynein complex. Orthologous to human DYNLL1 (dynein light chain LC8-type 1).
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG:

id description
K10418 DYNLL; dynein light chain LC8-type

RNA

RNA id representative length rna type GC content exon number start site end site
TU89218 False 621 TUCP 0.49 3 2037752 2039836
XM_043247450.1 True 663 mRNA 0.49 3 2037699 2039825

Neighbor

gene id symbol gene type direction distance location
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding upstream 23015 2006084 ~ 2014684 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding upstream 41840 1966583 ~ 1995859 (+)
LOC122350512 NA coding upstream 90750 1936761 ~ 1946949 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 210288 1822636 ~ 1827411 (+)
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding upstream 230297 1802695 ~ 1807402 (+)
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding downstream 15495 2055331 ~ 2058725 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding downstream 21705 2061541 ~ 2069288 (+)
si:ch211-51h9.7 NA coding downstream 29982 2069818 ~ 2071669 (+)
naif1 naif1,LOC107559603,LOC107753004 coding downstream 56323 2096159 ~ 2103906 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding downstream 66554 2106390 ~ 2133931 (+)
LOC122350140 NA non-coding upstream 10371 2024562 ~ 2027328 (+)
G60288 NA non-coding upstream 34696 2000761 ~ 2003003 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding upstream 38231 1967120 ~ 1999468 (+)
G60269 NA non-coding upstream 84573 1952793 ~ 1953126 (+)
G60265 NA non-coding upstream 87403 1947148 ~ 1950296 (+)
G60279 rpl6 non-coding downstream 1666 2041502 ~ 2113333 (+)
G60296 NA non-coding downstream 113635 2153471 ~ 2156394 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding downstream 119478 2159314 ~ 2162044 (+)
G60323 NA non-coding downstream 123471 2163307 ~ 2165242 (+)
G60328 NA non-coding downstream 153121 2192957 ~ 2204310 (+)
LOC122350053 NA other upstream 1719 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 17665 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 119328 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 818895 1210815 ~ 1218804 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 1185695 842077 ~ 852004 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1808778 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1885025 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1989467 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 3064734 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 3187116 5226952 ~ 5229608 (+)

Expression


Co-expression Network