LOC122350082 (si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737)


Basic Information

Item Value
gene id LOC122350082
gene name si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5104570 ~ 5264366 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU90648
CGGAGAATGTGCGCGAAACGCTCCACTGCTGTTCTCTGTAACTCCACAGGGCAGATTCTGTATGATTTGACGCGAACTGGTTTGGGAACGTCGGAGTGACATTGAAGAAAGCGCGTTTCCGAAGAGCCAGAACCGAACCTCCGTCTCGAGCTCATCTACAGTCAGCATCCGTACATTGTGGACCTGTTACCACTGGACTGGTACAAGTGACCGTTTCACCCTGTGTGTGTGGATACTTCTCCAGAGCGCGGAGGATTTGCGCAATTTCCACCGGACCGAATTATGACTCATTTTACTTTGCTCGGATGAGTTTTCAATCGATTTGATTTGCTTtgctattaattaaaacaaatattagccagtattgttaaatattaaagtggGCAAGTACCCGTTCAACAATGACTTTTTAATGCCCCTCCctgcaaattaaatatttgaatgcgtTTTGTGAGATGCGTAAAATGGAAACCACTGCGCGTAAATTCGCGTCGGATTAACTCTCTCTTCGCATCCCGGCCGCATTCCCGTGAAAATCTATGGAAGTAGCCGAGTTTGCTTTGAACTTGCTCTAGGCTGGGTGCCGGGAGTATTTTCTGCGGGACGTAGCGAGGATGCAGTCGGGGATGCGGGCGCTCTGTGCCGGCGGAGGCGCGTCTCTCTGCTGCCTGCTCATGCTGTGGATGATCTACACCCACATCCTGAAAGAAGGTCAGTTGGCAGTAGGCACGTGTGAGATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAGCAGTGGTGTGAGATGTCCCCGTGTTCAGAGGGTGAAATCTGCGGACTGCTCTTCAATCGCTCGGATGGACCTGCACCAAAGGAGGCGGCCGCATTAAAAAATCACGGTGAGACATGTCCTAAATATCTGTAACATTTCCTTTATTCACTTAGTTGACGCAATGTTGCATCACTCACACCACCTGTCTTTCATCTCACGTTCTAATGACTTAGATTAACCAAcattattctttatataatgCTTAACGGATCATTAGTTAATGACCatgcgtgtatatatactgtagaaACTTAAttagagattttaaatattcatatatatttctattttaatgtattgtgcATCAGCAGCTGATCTGTTTGGCAGTATGTAATGTTTGCTCATTATGCattaatgaaagttat
>TU90650
CTCCACTCAACAAGATGCCCCCATCGCCGTCAAGGTCAGTTGGCAGTAGGCACGTGTGAGATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAGCAGTGGTGTGAGATGTCCCCGTGTTCAGAGGGTGAAATCTGCGGACTGCTCTTCAATCGCTCCGGATGGACCTGCACCAAAGGAGGCGGCCGCATTAAAACCGTCACGCCTCTGCCCAAGGAGCCATCCTAAAGGACTTCAGATTGCCGTGAGGAGgTTTGCTGACATTCACAGGAGCGACGCCAAACAGGAATCATCCATCAGCCCCCACACATTTGTGTCCATCCTCTCATTTCGGAGCTAAAGATATCAGCTGCCCCTCTCCCCGTCACCCTCCAACAGGAAATGGAATCCGTGCGCCATGGTTGCAGTCAGTCAAGCATCTCTACAGTAACACCCAGGTCATCGTCTCTCAGCTGGGGACATTTTCTGTCAAACCTCGACATAATCGAACTGTTTAAGTTTTGATCTCGAAATACATTAGCTAGGAGAACATTTCACTCGCTTTCCATCCAGTTAAACCGTCAGAGGAGACCGTCCGCGCACCTTTCAGACTAAAATTACG
>TU90652
CGGAGAATGTGCGCGAAACGCTCCACTGCTGTTCTCTGTAACTCCACAGGGCAGATTCTGTATGATTTGACGCGAACTGGTTTGGGAACGTCGGAGTGACATTGAAGAAAGCGCGTTTCCGAAGAGCCAGAACCGAACCTCCGTCTCGAGCTCATCTACAGTCAGCATCCGTACATTGTGGACCTGTTACCACTGGACTGGTACAAGTGACCGTTTCACCCTGTGTGTGTGGATACTTCTCCAGAGCGCGGAGGATTTGCGCAATTTCCACCGGACCGAATTATGACTCATTTTACTTTGCTCGGATGAGTTTTCAATCGATTTGATTTGCTTtgctattaattaaaacaaatattagccagtattgttaaatattaaagtggGCAAGTACCCGTTCAACAATGACTTTTTAATGCCCCTCCctgcaaattaaatatttgaatgcgtTTTGTGAGATGCGTAAAATGGAAACCACTGCGCGTAAATTCGCGTCGGATTAACTCTCTCTTCGCATCCCGGCCGCATTCCCGTGAAAATCTATGGAAGTAGCCGAGTTTGCTTTGAACTTGCTCTAGGCTGGGTGCCGGGAGTATTTTCTGCGGGACGTAGCGAGGATGCAGTCGGGGATGCGGGCGCTCTGTGCCGGCGGAGGCGCGTCTCTCTGCTGCCTGCTCATGCTGTGGATGATCTACACCCACATCCTGAAAGAAGGTCAGTTGGCAGTAGGCACGTGTGAGATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAGCAGTGGTGTGAGATGTCCCCGTGTTCAGAGGGTGAAATCTGCGGACTGCTCTTCAATCGCTCCGGATGGACCTGCACCAAAGGAGGCGGCCGCATTAAAACCGTCACGCCTCTGCCCAAGGAGCCATCCTAAAGGACTTCAGATTGCCGTGAGGAGgTTTGCTGACATTCACAGGAGCGACGCCAAACAGGAATCATCCATCAGCCCCCACACATTTGTGTCCATCCTCTCATTTCGGAGCTAAAGATATCAGCTGCCCCTCTCCCCGTCACCCTCCAACAGGAAATGGAATCCGTGCGCCATGGTTGCAGTCAGTCAAGCATCTCTACAGTAACACCCAGGTCATCGTCTCTCAGCTGGGGACATTTTCTGTCAAACCTCGACATAATCGAACTGTTTAAGTTTTGATCTCGAAATACATTAGCTAGGAGAACATTTCACTCGCTTTCCATCCAGTTAAACCGTCAGAGGAGACCGTCCGCGCACCTTTCAGACTAAAATTACG
>TU90653
CTCCACTCAACAAGATGCCCCCATCGCCGTCAAGGTTAAAACAATTTCAATAGACTTTGCATCTGACACGTGTGGCCTGAAATTGCGTGTCAGTTGGCAGTAGGCACGTGTGAGATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAGCAGTGGTGTGAGATGTCCCCGTGTTCAGAGGGTGAAATCTGCGGACTGCTCTTCAATCGCTCCGGATGGACCTGCACCAAAGGAGGCGGCCGCATTAAAACCGTCACGCCTCTGCCCAAGGAGCCATCCTAAAGGACTTCAGATTGCCGTGAGGAGgTTTGCTGACATTCACAGGAGCGACGCCAAACAGGAATCATCCATCAGCCCCCACACATTTGTGTCCATCCTCTCATTTCGGAGCTAAAGATATCAGCTGCCCCTCTCCCCGTCACCCTCCAACAGGAAATGGAATCCGTGCGCCATGGTTGCAGTCAGTCAAGCATCTCTACAGTAACACCCAGGTCATCGTCTCTCAGCTGGGGACATTTTCTGTCAAACCTCGACATAATCGAACTGTTTAAGTTTTGATCTCGAAATACATTAGCTAGGAGAACATTTCACTCGCTTTCCATCCAGTTAAACCGTCAGAGGAGACCGTCCGCGCACCTTTCAGACTAAAATTACG
>TU90655
gttcctttaaatgTTCTATTTCATCGAAAGCCATCCACGTTTATTTCCCTCCGTGATTGCTTTGGCAATGACTCACAGACTGGTCAGTTGGCAGTAGGCACGTGTGAGATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAGCAGTGGTGTGAGATGTCCCCGTGTTCAGAGGGTGAAATCTGCGGACTGCTCTTCAATCGCTCCGGATGGACCTGCACCAAAGGAGGCGGCCGCATTAAAACCGTCACGCCTCTGCCCAAGGAGCCATCCTAAAGGACTTCAGATTGCCGTGAGGAGgTTTGCTGACATTCACAGGAGCGACGCCAAACAGGAATCATCCATCAGCCCCCACACATTTGTGTCCATCCTCTCATTTCGGAGCTAAAGATATCAGCTGCCCCTCTCCCCGTCACCCTCCAACAGGAAATGGAATCCGTGCGCCATGGTTGCAGTCAGTCAAGCATCTCTACAGTAACACCCAGGTCATCGTCTCTCAGCTGGGGACATTTTCTGTCAAACCTCGACATAATCGAACTGTTTAAGTTTTGATCTCGAAATACATTAGCTAGGAGAACATTTCACTCGCTTTCCATCCAGTTAAACCGTCAGAGGAGACCGTCCGCGCACCTTTCAGACTAAAATTACG
>XM_043246277.1
CGTGGAAGTGAACGGATGTTTATGCAAAACTCAAAAGCTTTTCAAGGTCAGTTGGCAGTAGGCACGTGTGAGATAGTGATGTTGAATAGAGACAGCAGTCAACCCAAGCGCACTATCGCCAGGCAGACAGCCCGCTGTGCCTGCCGGAGAGGACAGATCGCTGGCACCACACGGGCCCGGCCAGCATGCGTGGACGCCCGGATAGTGAAAAGCAAGCAGTGGTGTGAGATGTCCCCGTGTTCAGAGGGTGAAATCTGCGGACTGCTCTTCAATCGCTCCGGATGGACCTGCACCAAAGGAGGCGGCCGCATTAAAACCGTCACGCCTCTGCCCAAGGAGCCATCCTAAAGGACTTCAGATTGCCGTGAGGAGgTTTGCTGACATTCACAGGAGCGACGCCAAACAGGAATCATCCATCAGCCCCCACACATTTGTGTCCATCCTCTCATTTCGGAGCTAAAGATATCAGCTGCCCCTCTCCCCGTCACCCTCCAACAGGAAATGGAATCCGTGCGCCATGGTTGCAGTCAGTCAAGCATCTCTACAGTAACACCCAGGTCATCGTCTCTCAGCTGGGGACATTTTCTGTCAAACCTCGACATAATCGAACTGTTTAAGTTTTGATCTCGAAATACATTAGCTAGGAGAACATTTCACTCGCTTTCCATCCAGTTAAACCGTCAGAGGAGACCGTCCGCGCACCTTTCAGACTAAAATTACGTAAGTTCCTCGCAAAGAGCGGCGAGGCTGTTGCGTAACAAGCATCTCGGCGGACCCCAACTGCGTCTTTCGGAGCAAGGACATGTCGTCGATGAAAGGCCAAGGATGTGCAGAGACCTTTAAACGAACCGCAACGCTTTCTTATGGAACTGGGAAGCAGCAGATGACTGACGTGTCCTGTAGATTTGACCTCACGCGGTTTGACCATATGGATTGTGTGCTGTCTGAGAATGGCAATGCACTGATGCCGTCAACTCTAATCATGGCTGATTTAAAGATTAGCAAACAATGTGTGGATGTCATCTGTCCCTTCCTCTCTGGGGCGTCTCTTTCACTCTCTGCTTTAAATGTCTGTCTCTAATGGATATATCATTTCTATCGATACTTTATTTTGACTGTAAATT

Function

NR:

description
protein FAM19A5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90648 False 1285 TUCP 0.47 3 5104570 5126254
TU90650 False 709 TUCP 0.54 5 5235779 5263963
TU90652 True 1529 TUCP 0.52 7 5104570 5263963
TU90653 False 763 TUCP 0.53 5 5235779 5263963
TU90655 False 757 TUCP 0.52 5 5238481 5263963
XM_043246277.1 False 1124 mRNA 0.50 5 5232291 5264366

Neighbor

gene id symbol gene type direction distance location
tbc1d22b tbc1d22b,LOC107653399,LOC107734531,LOC107674367,LOC107725284 coding upstream 39639 5020564 ~ 5064931 (+)
pim1 pim1,LOC107734527,LOC107674355,LOC107584899,LOC107598956,LOC107725309,LOC108438567,LOC103031835,LOC105889771 coding upstream 99129 5001545 ~ 5005441 (+)
LOC122350108 LOC107653401 coding upstream 257382 4834488 ~ 4847188 (+)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 278337 4769240 ~ 4826233 (+)
gripap1 gripap1,LOC107653413,LOC107743091,LOC107674351,LOC107734529 coding upstream 364362 4697359 ~ 4740208 (+)
mapk13 mapk13,mk13,LOC107725303,LOC107598961,LOC107734522,LOC108265696,LOC108438563,LOC107653398 coding downstream 49168 5313534 ~ 5323848 (+)
brpf3b brpf3,brpf3b,LOC107725302,LOC107674334,LOC107734521,LOC107653397,LOC107570975 coding downstream 60795 5325161 ~ 5338309 (+)
fxn fxn,LOC107598972,LOC107566812,LOC107674317,LOC107664976 coding downstream 247049 5511415 ~ 5516121 (+)
LOC122349970 LOC107598973,LOC107566802,LOC107757293 coding downstream 283747 5548113 ~ 5605167 (+)
ift81 ift81,LOC107725332,LOC107599023,LOC106585468 coding downstream 375445 5639811 ~ 5658504 (+)
LOC122349982 NA non-coding upstream 105473 4984630 ~ 4999097 (+)
G61189 NA non-coding upstream 187144 4891448 ~ 4917426 (+)
G61190 NA non-coding upstream 194384 4908923 ~ 4910186 (+)
G61160 NA non-coding upstream 251114 4852279 ~ 4853456 (+)
G61159 NA non-coding upstream 252458 4851670 ~ 4852112 (+)
G61290 NA non-coding downstream 127928 5392294 ~ 5396169 (+)
G61281 NA non-coding downstream 145974 5410340 ~ 5423462 (+)
G61312 LOC107664996,LOC107725301 non-coding downstream 185590 5449956 ~ 5453605 (+)
G61341 NA non-coding downstream 344234 5608600 ~ 5609423 (+)
G61345 fnbp1a,LOC107674371,LOC107757295,LOC107566801 non-coding downstream 356684 5621050 ~ 5621594 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 1030673 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 1173082 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 1254013 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 3064734 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 3068590 2030824 ~ 2035980 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 1491739 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 1584115 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2041753 7306119 ~ 7529086 (+)
smim15 smim15,LOC107700545 other downstream 3212805 8477171 ~ 8478331 (+)
G62483 fam78bb,LOC107717547,LOC107676968,LOC107585866,LOC107751100,LOC107550401,LOC107695225 other downstream 4440115 9704481 ~ 9705639 (+)

Expression


Co-expression Network