kcnd1 (kcnd1,LOC107584898,LOC107601760)


Basic Information

Item Value
gene id kcnd1
gene name kcnd1,LOC107584898,LOC107601760
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4769240 ~ 4826233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246039.1
TGCAACAGAGCagcggaggagaggagagagaggcaAGGAGGACTAGGCGTTACGGTCGCTCCTTCACAAGCTGCATGCGAGATGCCAGGACTGCTGCAGAGAGATTGCcgtttctttcctttttctttctttcatcagcTTTCCCTCACATTGAACTCTTCCTCCTCTCGTCTGTCTCGGAGGTGCATGAAAAAACGGCCATACTTGGAGTCCAGGTGGCTTCTGTTCTGAGATCTCCATTTGAAAATCTTCTCAGCCTCTTGTGAAATTGAGTAGCCACTTGAAGCTTgaagaaggaaaaataaatgaaaggcaAGAGTCTTGAAATTGCATAAAAAGGAGGGAGAACGCCTTCAAAGAATGGACACAGTAGAGGAGAAATAGTCTTCTTGCTAACTTCAGAAAGCCTCATCACAGactaataaaaatttgaaaCGGCACAGGGCAGCAACAAATCAGTATTCTCCGGCAGAGCCTGCAAGAAATGGCTAAGAGGGTTAACCCTTTAAATGGCTGAATTGATTTTTTGAACAGCCACTGCAAACAAAAGACTTTTAATGGGTCGTTTGAGAATCATTTTTGACATATGGAGATCCTGATATTCAAATGGCTTTGACACTCTGACAGCcccaaattttctttttttgtagcagataatgaaaacatttgccTACTTTCATTTACCTCACAGGATTTCTTCCTAGCCTATTAAATGTACAGTCAAAGCGAGGAACTAGATCCTCAGCTCGGATGATTAGTTCGGAAAGACTCTTTCTGGTCCAAAAAGGTTCAGAAAATCTTCTCAGGACTGACTGGCGGTCACTCTATTggtgtatttgatttattaacaaCGCTTAGCCACCAAATTAAAAATGGCTGCCGGAGTGGCAACATGGCTGCCGTTTGCCAGGGCAGCGGCCGTCGGCTGGCTTCCTTTGGCCAAGAAAACCATGCCCAAACCGCCCGTAGATAAAAAGAGTCGCAACGACGAGATCCTGTTCGTAAACGTGAGCGGGCTCCGCTTCCAGACATGGAAGAACACTCTGGACCGCTACCCAGACACTCTGCTGGGCAGCTCGGAAAAGGAGTTTTTCTACAACGAGGACACTCAGGAGTATTTCTTCGACAGGGACCCGGAGATGTTTCGCCACATTTTGAACTTCTACCGAACTGGCAAGCTTCACTACCCGAGACAGGAGTGCATTCAGGCCTTCGACGAGGAGCTGGCGTTTTACGGCATCGTGCCGGACATTATCGGTGACTGCTGCATGGAAGAGTACAGGGACCGCAAGAAAGAGAACCAGGAACGTTTGGCCGAGGACACGGAGGCCGAGATGGCGACGGATACTCCACTTCCGCCGCACAGCACACCTCGGGAACGCTTGTGGCGCGCCTTCGAAAACCCCCACACGAGCACCATGGCTCTGGTTTTCTACTACGTCACGGGTTTCTTCATCGCCGTCTCGGTCATAGCAAACGTGGTGGAAACCGTGCCCTGCCGCCCCCCCAAAGGAAGCAAGAAAGACTTGCCGTGCGGCGAGAAGTACTCGCTGGCGTTTTTCTGCATGGACACTGCCTGCGTCCTCATCTTCACGTTCGAGTACCTCATGAGGCTTTTCGCCGCACCCAGTCGCTGCAAATTCATGCGCTCGGTCATGAGCGTCATCGATGTGGTCGCCATCATGCCCTACTACATCGGCCTTGTCATGCCTGAGAACGAGGACGTGAGTGGCGCATTCGTCACATTGAGGGTGTTCCGTGTCTTCCGGATCTTCAAGTTCTCGCGACACTCTCAGGGCCTGCGAATCCTGGGTTATACTCTGAAGAGCTGCGCTTCCGAGTTAGGCTTCCTCCTGTTTTCCCTCACCATGGCCATCATCATATTTGCCACCGTCATGTTCTACGCCGAGAAAGGCACCAAGGGAACCAACTTCACCAGCATCCCAGCCTCCTTCTGGTACACCATAGTCACTATGACAACACTTGGGTATGGAGACATGGTTCCAAACACCATCGCCGGAAAGATCTTCGGCTCTATCTGCTCTCTCAGCGGCGTGCTGGTTATCGCTCTTCCTGTACCCGTCATCGTGTCCAACTTCAGCCGGATCTACCACCAGAACCAGAGAGCAGACAAGATGAGAGCCCAGCAGAAAGTTCGACTTGCCAGGATTCGCTTGGCCAAGAAGGGAACCACCAACGCCTTCCTACAGTACAAAGAAGAAGGAGGATTTCagGGTCGAGACAGTGACAGCGCTTTGTGTCTGAAGAACAGATCTTCCTTCGAGCACCAACACCATCACCTGCTGCATTGCCTGGAAAAGACGACAAACCATGAGTTCACAGACGAGCTGACGTTCAGTGAGATGTGTATGACCGAGTCGGTGGGCTATCGCACCAGCCGCAGCACTTCCATCTCCAGCCAGCAGGGGGTGTCGACTTCCTGCTGCCCCCGCAGGGCTAAAAGAAGAGCCATCCGCCTCGCCAACTCCACCGTCTCCGTTAGCCGCGGCAGCGTACAGGAGCTGGACACCCTGCAAGTGCACAAAACCTCCGCTGGACCCCAAAGCCGCTCCAGTCTCAACGCCCGGACAGAAGACCTGAAGCTAAACTGTGAGGATCGGGATTTCACAGCGGCTATAATCAGTATACCCACCCCTCCCGCCAACACCCCCGACGAGAGTCTGCCGCCCTCTCCTGCCATTCCCGGAATCTTACGCAACTCTCGCTCTACTTCCTTCACCCATGAGACAGTGAAGATCTCCTCCTTATAACTGCCACAAGCACACAAGCATCCCCTACCGCACAACGGAAAGGAAGCGATGGGGGCTTCTCCCAGGAAAGGTGGCGAACGCCGCAGAAAAGACAAAGTGCATCTCGTAACAAATCTGCTTCATTCCAAAACCGACAATTCGACGTGGACTCGCATGAGCTGACGTGCTTTTCGTGACCCCGGACTATTGACGCGGGACTGACGGTGCCGCGTTCGGGGGAGCTCGAAAAAAGGCCAACTCAATCGCATTTTACGATAAATCAGCAGTTGTAGTGGCACTGAAGgccttttacttttaaagataTGCAATGTTTCAACAAGCAGGAATTATGCCTATATACGTCCACTGCGTAATACAGTTGCAGGAGAGATTACAAAAGGCTGAAATTATCGTAAAGTACATCGGTGTATATCGAACCCGTAGATCTTTGCAGGGAAAAATACGACGGCCGAGATAAAGGAGGTGGTGTATATGTATCAATATTTGTATCATACCTCTTTAGATCACATGCATCTTCAAAAccccacacaaaaaaaaaaaaaactaagaaaaaaagacGAGGCGATTTCTGACCCGAACATGCATGTTGTTGTATAGTAGATACCATGGCAGAGAATGGAGCCGCCAACATGCTACTCTCACATACTTTTGCATGGTACTTCTTTTACCTCCGTTTCGTTTgtcctgttttctttcttgacattgatgaaaaaaaaaaaagacgataTTTACAGAGTATTAACGATCAAACGTGTTGCACCTGATGTgcacattacaaaaaaagaacgataaacataaaaaaaaaaaatcattcaggCATGTTCTTTGCAAAAATCTGAGGtcggcagtgtgtgtgtgtgagtgcgtgcgtgcgtgcgtgagGCGTGAATGGGAAGGACTTGTGTTATTTGATCACAGATATGCATGGATACCGTTGTAggtatttttatgtgttttctcCCATGGGAAAATGAAAGGTTTCTATAGCATTTTAAAGCGAATGGAGGGCGTTTACCACTGTCATCGAATTTTACCGCAGTAATTAGAGTCACACcaacttatttttcatttggcTTGGTAATTAAGTGTAACCTTTAAAACCTGGCTAGCTATTTTTATACAATAGCTTATGCATCGAAACACGGCTACGTTAACGGTCCAGTGAAGCATTTCTCTAATTTGTTTTAAAGCTCatctgttaatgtttatttaaaaatcataagcAGCAACGAGACAGGCAATAATagtgtacttattttttacTACAGAACAGAAGCGAACGATACACTTATATATGGAAATTAGTACGGAAAAGGAGGAATGCAAATTTGCACTTGACTgtgatgaaaatatatttgttactGTTTACAAGCATTGTTCCTAAGTTGATTTTTACGTTCTTTTggttctgtctgtttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccagcttcATAAAGCAGTGTGAAGTGGTAAATTTAGTAATTGGTCAGGCACCTGCTCATTTTCGGCAGGGGGTGTTGGATGAAACGGCTCCCGGTAGGAGATTAAAGAGTTAGATATCAAAAGCACAGAGGTGTAAAGTCTATTCCACAAATAAAGTGAACAGAACTCAGAAAA

Function

symbol description
kcnd1 Predicted to enable A-type (transient outward) potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in cell projection and membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in dendritic spine; postsynaptic density; and postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human KCND1 (potassium voltage-gated channel subfamily D member 1).

NR:

description
potassium voltage-gated channel subfamily D member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246039.1 True 4457 mRNA 0.47 7 4769240 4826233

Neighbor

gene id symbol gene type direction distance location
gripap1 gripap1,LOC107653413,LOC107743091,LOC107674351,LOC107734529 coding upstream 29032 4697359 ~ 4740208 (+)
mon1ba LOC107653417,LOC107743134,LOC107601752 coding upstream 72685 4691775 ~ 4696555 (+)
pnck pnck,LOC107601755,LOC107653407,LOC107743135,LOC108441108,LOC105889742,LOC108265019 coding upstream 286042 4474360 ~ 4483198 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding upstream 338832 4410350 ~ 4430408 (+)
slc35a2 LOC107743096,LOC107674336,LOC107653423,LOC107734533,LOC107601764,LOC107584890 coding upstream 359161 4399914 ~ 4410079 (+)
LOC122350108 LOC107653401 coding downstream 8255 4834488 ~ 4847188 (+)
pim1 pim1,LOC107734527,LOC107674355,LOC107584899,LOC107598956,LOC107725309,LOC108438567,LOC103031835,LOC105889771 coding downstream 175312 5001545 ~ 5005441 (+)
tbc1d22b tbc1d22b,LOC107653399,LOC107734531,LOC107674367,LOC107725284 coding downstream 194331 5020564 ~ 5064931 (+)
LOC122349937 ift81,LOC107725332,LOC107599023,LOC106585468 coding downstream 382293 5208526 ~ 5226476 (+)
mapk13 mapk13,mk13,LOC107725303,LOC107598961,LOC107734522,LOC108265696,LOC108438563,LOC107653398 coding downstream 487301 5313534 ~ 5323848 (+)
LOC122350971 NA non-coding upstream 18916 4741901 ~ 4750324 (+)
G61113 NA non-coding upstream 96232 4672173 ~ 4673008 (+)
G61108 NA non-coding upstream 111578 4657340 ~ 4657662 (+)
G61089 NA non-coding upstream 255675 4510004 ~ 4513565 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding upstream 269833 4498877 ~ 4499407 (+)
G61159 NA non-coding downstream 25437 4851670 ~ 4852112 (+)
G61160 NA non-coding downstream 26046 4852279 ~ 4853456 (+)
G61189 NA non-coding downstream 65215 4891448 ~ 4917426 (+)
G61190 NA non-coding downstream 82690 4908923 ~ 4910186 (+)
LOC122349982 NA non-coding downstream 158397 4984630 ~ 4999097 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 695343 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 837752 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 918683 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2729404 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2733260 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 278337 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 400719 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 1929872 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2022248 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2479886 7306119 ~ 7529086 (+)

Expression


Co-expression Network