LOC122350971


Basic Information

Item Value
gene id LOC122350971
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4741901 ~ 4750324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU90521
GGAACGGAGCCCGACTTTCACACCGAATGCgttaaaaaatataagaatgCGTGttgtgctggtgtgtgtgtggcaggctGAAGTGTGTGGACAGATCTGTCACAAGCTGTTTCTGGAGAGCGTGGCACAGCGGGACGTCCCCGTgtgacaaaatgtcatttaattcaACGGTTGTTTTTTTGGCATCTTTCTCAGGATGGTTGTGTTTCGTTATTGTGTAACGTTATATGATTTCTGAG
>XR_006251664.1
TATAGATACAATAAGTTGCCAAATCTGAATCTGTGAGTCATTTTTAAACCGGTTTGCTTAAACCACTTCACATTGGGTGGTTAATTTGCTTTCATGTGGTgcattaaaaccatttaatgTACAGCTATCATTGGATTATCCCTTATGAAATCAATGCAAATGTGGTACACCTCTTCAACTGCCAAAAACAGTACTCTTCAACACAattataaagtgtttattttatttaatagcatAAAATGCGATAACTCTCGGGTCACTAAAATGCACACTCATGAGTAATAAACAGGGCATTAGTGGATTGACTGATATCAAATCAATACCTAATAAAGGAAGGAATTATTCAGGACAGAAAAGTAGTAGGACTGAACCTTTCCAATGGTTGCTCATTAGTTTAAGTTGCAGATTTAATGTGGCCGAGGGGCTCTTCAGCATCTTAagtgaaatgattaaaacattGATTTGTAGTCAGCACACCTACACCTCAGAACATAACACTACGTCACGGTTAAAACTCTCCTGTGAGCTCCAGCTTCTTGTGTCAGTCTACTTTTTGACTGTTTTATCATTACAGGTGACTAGGGATATTGTGCATTGATTGGAGCAGCTTTCACATAATTGTCTTTGCTTCTGGTTATTGTTTTAATTTAGCCGCAAATCCTTGTATTGACATCAGAGTTGTAGAAATTGAACGCAAGGGTTGTCAGATGGAAAAGGCTGGAGAATTACTCCCAAGGGTGTTGGACAAAACACCCATTCCAATGCTCCCATGATGCCTTTGCCCAGTCCTTCAACGCCGCTTCACTCGTTCAGAGCTTgAATGTTTTTGCGGGTCAAAAAAACCCGACACTCTTCATCTTGAAGGCGCCGGCTGAAGGTCTCAGAGGTCTTGTCTGATGTCTTCCTCGCTTGTTGGCCATAAGCAGATGTGTAATACAAGGCAAGCAGAAGGTATCGAAAGGACTGATGAAGAAAAATGGAGGCAATCATTCGCTCGTCCTCAGCCTGTCACAACGAAATATAACTCAATTATTTCTTGTCAACAGATGAGAAATGTTGAACGTGGCATCAGAGTGGAACGGAGCCCGACTTTCACACCGAATGCgttaaaaaatataagaatgCGTGttgtgctggtgtgtgtgtggcaggctGAAGTGTGTGGACAGATCTGTCACAAGCTGTTTCTGGAGAGCGTGGCACAGCGGGACGTCCCCGTgtgacaaaatgtcatttaattcaACGGTTGTTTTTTTGGCATCTTTCTCAGGATGGTTGTGTTTCGTTATTGTGTAACGTTATATGATTTCTGAGTGAAATCTACATTAGCGCCTGTGTTTCCCACACGTTAAGCACTTTTAGTTAATTAGAGTTATTGAGTAACTGTGTATGTAAATACACTGTAACGTGAAGACTGTAATATCCTTCACCTCATACTAAGCTTGAACAGGGCTTGATttccttaaaggaacagctcgCCTTGAATATAAACtccaa
>XR_006251665.1
TATAGATACAATAAGTTGCCAAATCTGAATCTGTGAGTCATTTTTAAACCGGTTTGCTTAAACCACTTCACATTGGGTGGTTAATTTGCTTTCATGTGGTgcattaaaaccatttaatgTACAGCTATCATTGGATTATCCCTTATGAAATCAATGCAAATGTGGTACACCTCTTCAACTGCCAAAAACAGTACTCTTCAACACAattataaagtgtttattttatttaatagcatAAAATGCGATAACTCTCGGGTCACTAAAATGCACACTCATGAGTAATAAACAGGGCATTAGTGGATTGACTGATATCAAATCAATACCTAATAAAGGAAGGAATTATTCAGGACAGAAAAGTAGTAGGACTGAACCTTTCCAATGGTTGCTCATTAGTTTAAGTTGCAGATTTAATGTGGCCGAGGGGCTCTTCAGCATCTTAagtgaaatgattaaaacattGATTTGTAGTCAGCACACCTACACCTCAGAACATAACACTACGTCACGGTTAAAACTCTCCTGTGAGCTCCAGCTTCTTGTGTCAGTCTACTTTTTGACTGTTTTATCATTACAGGTGACTAGGGATATTGTGCATTGATTGGAGCAGCTTTCACATAATTGTCTTTGCTTCTGGTTATTGTTTTAATTTAGCCGCAAATCCTTGTATTGACATCAGAGTTGTAGAAATTGAACGCAAGGGTTGTCAGATGGAAAAGGCTGGAGAATTACTCCCAAGGGTGTTGGACAAAACACCCATTCCAATGCTCCCATGATGCCTTTGGTGTAAGATCAGCACCCGGACTCTACAAAGCCATGCTGTTGTGATAGCTGCAGTTTCATTATTCATAGTGTCTTCCAAAAGATGCAGTCTGCCCTTACTGTATACACTTCTGCACaaccataccatcagagatgatCTGAACACTGATAAAACGCTTGGAAGGTCTCGGAAGGTGTGATTTCCAGcaagaatgtcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90521 False 239 lncRNA 0.46 1 4749903 4750141
XR_006251664.1 True 1497 lncRNA 0.40 4 4741901 4750324
XR_006251665.1 False 979 lncRNA 0.39 4 4741901 4743664

Neighbor

gene id symbol gene type direction distance location
gripap1 gripap1,LOC107653413,LOC107743091,LOC107674351,LOC107734529 coding upstream 1693 4697359 ~ 4740208 (+)
mon1ba LOC107653417,LOC107743134,LOC107601752 coding upstream 45346 4691775 ~ 4696555 (+)
pnck pnck,LOC107601755,LOC107653407,LOC107743135,LOC108441108,LOC105889742,LOC108265019 coding upstream 258703 4474360 ~ 4483198 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding upstream 311493 4410350 ~ 4430408 (+)
slc35a2 LOC107743096,LOC107674336,LOC107653423,LOC107734533,LOC107601764,LOC107584890 coding upstream 331822 4399914 ~ 4410079 (+)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding downstream 18916 4769240 ~ 4826233 (+)
LOC122350108 LOC107653401 coding downstream 84164 4834488 ~ 4847188 (+)
pim1 pim1,LOC107734527,LOC107674355,LOC107584899,LOC107598956,LOC107725309,LOC108438567,LOC103031835,LOC105889771 coding downstream 251221 5001545 ~ 5005441 (+)
tbc1d22b tbc1d22b,LOC107653399,LOC107734531,LOC107674367,LOC107725284 coding downstream 270240 5020564 ~ 5064931 (+)
LOC122349937 ift81,LOC107725332,LOC107599023,LOC106585468 coding downstream 458202 5208526 ~ 5226476 (+)
G61113 NA non-coding upstream 68893 4672173 ~ 4673008 (+)
G61108 NA non-coding upstream 84239 4657340 ~ 4657662 (+)
G61089 NA non-coding upstream 228336 4510004 ~ 4513565 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding upstream 242494 4498877 ~ 4499407 (+)
G61056 NA non-coding upstream 297485 4439008 ~ 4444416 (+)
G61159 NA non-coding downstream 101346 4851670 ~ 4852112 (+)
G61160 NA non-coding downstream 101955 4852279 ~ 4853456 (+)
G61189 NA non-coding downstream 141124 4891448 ~ 4917426 (+)
G61190 NA non-coding downstream 158599 4908923 ~ 4910186 (+)
LOC122349982 NA non-coding downstream 234306 4984630 ~ 4999097 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other upstream 668004 4029303 ~ 4073897 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 810413 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 891344 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 2702065 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 2705921 2030824 ~ 2035980 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 354246 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 476628 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2005781 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2098157 6848481 ~ 6849711 (+)
soat1 soat1,LOC107549691,LOC107700347,LOC107657858,LOC107758003 other downstream 2555795 7306119 ~ 7529086 (+)

Expression


Co-expression Network