RNA id: XR_006251664.1


Basic Information

Item Value
RNA id XR_006251664.1
length 1497
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC122350971
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4741901 ~ 4750324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAGATACAATAAGTTGCCAAATCTGAATCTGTGAGTCATTTTTAAACCGGTTTGCTTAAACCACTTCACATTGGGTGGTTAATTTGCTTTCATGTGGTgcattaaaaccatttaatgTACAGCTATCATTGGATTATCCCTTATGAAATCAATGCAAATGTGGTACACCTCTTCAACTGCCAAAAACAGTACTCTTCAACACAattataaagtgtttattttatttaatagcatAAAATGCGATAACTCTCGGGTCACTAAAATGCACACTCATGAGTAATAAACAGGGCATTAGTGGATTGACTGATATCAAATCAATACCTAATAAAGGAAGGAATTATTCAGGACAGAAAAGTAGTAGGACTGAACCTTTCCAATGGTTGCTCATTAGTTTAAGTTGCAGATTTAATGTGGCCGAGGGGCTCTTCAGCATCTTAagtgaaatgattaaaacattGATTTGTAGTCAGCACACCTACACCTCAGAACATAACACTACGTCACGGTTAAAACTCTCCTGTGAGCTCCAGCTTCTTGTGTCAGTCTACTTTTTGACTGTTTTATCATTACAGGTGACTAGGGATATTGTGCATTGATTGGAGCAGCTTTCACATAATTGTCTTTGCTTCTGGTTATTGTTTTAATTTAGCCGCAAATCCTTGTATTGACATCAGAGTTGTAGAAATTGAACGCAAGGGTTGTCAGATGGAAAAGGCTGGAGAATTACTCCCAAGGGTGTTGGACAAAACACCCATTCCAATGCTCCCATGATGCCTTTGCCCAGTCCTTCAACGCCGCTTCACTCGTTCAGAGCTTgAATGTTTTTGCGGGTCAAAAAAACCCGACACTCTTCATCTTGAAGGCGCCGGCTGAAGGTCTCAGAGGTCTTGTCTGATGTCTTCCTCGCTTGTTGGCCATAAGCAGATGTGTAATACAAGGCAAGCAGAAGGTATCGAAAGGACTGATGAAGAAAAATGGAGGCAATCATTCGCTCGTCCTCAGCCTGTCACAACGAAATATAACTCAATTATTTCTTGTCAACAGATGAGAAATGTTGAACGTGGCATCAGAGTGGAACGGAGCCCGACTTTCACACCGAATGCgttaaaaaatataagaatgCGTGttgtgctggtgtgtgtgtggcaggctGAAGTGTGTGGACAGATCTGTCACAAGCTGTTTCTGGAGAGCGTGGCACAGCGGGACGTCCCCGTgtgacaaaatgtcatttaattcaACGGTTGTTTTTTTGGCATCTTTCTCAGGATGGTTGTGTTTCGTTATTGTGTAACGTTATATGATTTCTGAGTGAAATCTACATTAGCGCCTGTGTTTCCCACACGTTAAGCACTTTTAGTTAATTAGAGTTATTGAGTAACTGTGTATGTAAATACACTGTAACGTGAAGACTGTAATATCCTTCACCTCATACTAAGCTTGAACAGGGCTTGATttccttaaaggaacagctcgCCTTGAATATAAACtccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90465 lncRNA upstream 68893 4672173 ~ 4673008 (+) True G61113
TU90460 lncRNA upstream 84239 4657340 ~ 4657662 (+) True G61108
TU90439 lncRNA upstream 228336 4510004 ~ 4513565 (+) True G61089
TU90437 lncRNA upstream 242494 4498877 ~ 4499407 (+) True G61087
TU90392 lncRNA upstream 297485 4439008 ~ 4444416 (+) True G61056
TU90534 lncRNA downstream 101346 4851670 ~ 4852112 (+) True G61159
TU90535 lncRNA downstream 101955 4852279 ~ 4853456 (+) True G61160
TU90571 lncRNA downstream 141124 4891448 ~ 4917426 (+) False G61189
TU90573 lncRNA downstream 143852 4894176 ~ 4917426 (+) True G61189
TU90574 lncRNA downstream 158599 4908923 ~ 4909367 (+) True G61190
XM_043247177.1 mRNA upstream 1693 4697359 ~ 4740208 (+) True gripap1
XM_043247179.1 mRNA upstream 1693 4697359 ~ 4740208 (+) False gripap1
XM_043247178.1 mRNA upstream 1693 4697359 ~ 4740208 (+) False gripap1
XM_043247748.1 mRNA upstream 45346 4691775 ~ 4696555 (+) True mon1ba
XM_043247749.1 mRNA upstream 45346 4691775 ~ 4696555 (+) False mon1ba
XM_043246039.1 mRNA downstream 18916 4769240 ~ 4826233 (+) True kcnd1
XM_043246327.1 mRNA downstream 84164 4834488 ~ 4847188 (+) True LOC122350108
XM_043246328.1 mRNA downstream 84164 4834488 ~ 4847188 (+) False LOC122350108
XM_043246998.1 mRNA downstream 251221 5001545 ~ 5005441 (+) True pim1
XM_043247219.1 mRNA downstream 270240 5020564 ~ 5064931 (+) True tbc1d22b
XR_006251613.1 other upstream 668004 4048619 ~ 4073897 (+) False ccdc120a
XR_006251567.1 other upstream 810413 3924861 ~ 3931488 (+) False LOC122350109
TU89939 other upstream 891344 3848614 ~ 3850557 (+) True G60788
TU89218 other upstream 2702065 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 2705921 2033892 ~ 2035980 (+) True LOC122350053
TU90648 other downstream 354246 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 354246 5104570 ~ 5263963 (+) True LOC122350082
TU90650 other downstream 485455 5235779 ~ 5263963 (+) False LOC122350082
TU90653 other downstream 485455 5235779 ~ 5263963 (+) False LOC122350082
TU90655 other downstream 488157 5238481 ~ 5263963 (+) False LOC122350082

Expression Profile