RNA id: XM_043247177.1


Basic Information

Item Value
RNA id XM_043247177.1
length 4671
RNA type mRNA
GC content 0.47
exon number 28
gene id gripap1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4697359 ~ 4740208 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCGCACATTACACACGGTGGGGCTCTGTCAGCGAGCCAAAGCGTTTCAGATGGGCGACATCAGTAAGCTGCAACTTTAACCTTCTTCATCTTATCAGAATGACAGTTAACTTGCTAACGCAAGGCTGACAGAAAACACAGCAACAGCGGATAGAGAGAGATTGTATTCTGTCCAGCAGTGTTTTGCCGTTAGTGAAGATGGCGCAAGCACTGTCAGAAGAGGAGTTCCACCGTATGCAGGCTCAGCTCTTGGAGCTGAGAACACAGAACTACCAACTCTCCGATGAGCTGCGGAAAAATACAGCAGAACTCAACAGTGTCCGTCAGAAGACCTCGAACCTTGAGAAAGACTATGTCAAAGCGCAGAAGGCTTTGAACAAGAGCAAGAAAGCACAGGAGGTAGATGCCTTACTCAGTGAGAATAAAATGCTTCAGGGCAAGTTACACAGTCAGGAAGATGACTTCAGACTGCAGAACAGCACCCTCATGCAAGAGCTGTCCAAGTTATGTTCCCAGATCGAGCAGTTAGAATTAGAGAATCGGAGACTGAGGGAGGGTCAAGGGCTGGAAGGGCCCGCCTCCAGCCCTGCCTCTGGTCCAGTGGATGCTGAGCTCCTGCGTCTACAGGCAGAAAACTCCGCCCTGCAGAAGAAATTAAAAGCTCTTCAAGAATGTGCTGATGCTAATGACGGAAAAGCAGCACTCGTCGATGGTTCGCCCGGCACTAATGGTGTCCAATCAGATGCCAGCGGTCACAGTGATGACCCTTCGGCCTCAGGAAATAATCAGATTGATCAGGCCGAAGTGCAAAGCGTCAAACCAGAACAGCGAGATAATGAACTGAGCGAGGTGGCATTAAAGCTTCAAACGGAAATGGAGGAGAAATGCTTACTGAGGGAACAACTCCAGACACTAGAGatgtCCAAGCAGGCGGAAATCACAAAACTTCAAGAAGAAAATGCTAAAtggtCCGATAAGTTGAAGAAAAAGCAAGAGAGCTTCCAGCGTCTTCAAGTTGAGAAGGAAGCACTTTATAATGACAGCAGGACTAAAATTGATGAGATCCAACAGAGGAAAGAGGAGGAGCTTAAATCCATAAACCTTCGTGTGCAGAAATTGCAGACAGATTTAATGGCCGCCAACCAGAACGTCGCTGAACTGAAGGAGCAGTTGCAGAGTAAACAGAAAGAGCATGAGATGGCCATCCATGCGCTCAAAGATCAGGTAGCGTGTCAGAGCGCGGTCAGTCAGGAGCAGGTGGAGGGCATGCTGAGCGAGAACGATGCTCTCAGGACAAATCTAGCAGCCCTAGAACAGatcCAAACGGTAAAGACTCAGGAAATGAATTTGCTGAGAGAGCAAAGTCTGGCACTAAATGCAGAGCTTCAGCAGAGACGCACAGAACAAGAGAGCTTCCTGGCGCAGAAAGATGATCTCAGCTCACAGCTGCAGGAGTCAAACCGCGCGAACAGTCGGCTTCTGGAGCAGCTCACTGAACTGGGTCTGGAGAAGGACAAGCTACAGCAGGAGTTAGAGGAGGCCAGAAAGACTGCGGATAAGCGTAAGGTCATGCTGGATGAACTGGCCATTGAAACGGCACAGGAGAAGTCACGACACAAAGAGGAGCTCAGCGATGTGCGCTTGCAGCATGAGAAAGAAGTGCTGAGCATCAGGGCCCGCTATGAGAAGGAGCTCCGCGGCCTCCACGAGGAGAAGAACCGCACGGAAGAGGAGATCCGCTCACAGCTGCGAGATGAGAGAgctCGTACCAAAGAACTGGAAGGTCTTCAGCCGTATGTGGAGGAGTTGAAAGCTCAGGTTCAGTCCATGGAGGGGACGAAGGGCTGGTTTGAGCGCAGACTCAAGGAAGCAGAGGAGACCATGGAAAAGAACAAACTGGACCATGCAGAAGAGATCCAGCGGTTACAGAAAGATCACACACTCCAGCTGGAGGTTAAAGCTGCAGAAGTGGAGGCAGTCAAACAGCAAGTGGCTGAgatgcagaaagaaagagaagaactCAACAACACAATCAGCAAACTCAAACAGgAGATTAAAGATACAGTGGATGGACAGAGAATCCTGGAGAAAAAAGGTAGTTCAGCGCTGAAAGACTTGAAGAGGCAGCTCCATctggagagaaaaagagcagaTAAACTCCAGGAGCGGCTGCAGGAAATCTTAACCAACACTAAGACCCGCACAGGTCTGGAGGAGCTGGTGTTGTCTGAGATCAGTTCTCCGAGCCGTACGCAGCAGACGGGTGACAGCAGTAGTGTCTCCTCCTTCAGTTACAGAGAGATCATGAAAGACGGGGCTTCGGCTCCCAGCACCAATAAGTCTAACACCAGCAGCCCTCAGTCCCAGCGCCCCGCTGACCTTTCGGACGACGAGGTCAGTGAGCTCTTCCAAAGACTCGCCGAGGTCCAGCAGGAGAAGTGGATGCTGGAGGAGAAGGTGAAACACTTGGAGGTCAGCTGCGCCTCAATGGCCGATGACATCTGTAAAAAGAGTGCCATTATTGAGACGTACGTCATGGACAGCAGAAGAGatgTATCCGGAGGAGGTGCGGTGGCTCATGGTGCTCAGGGTGAGCGTGGAGGTTTGAGTTCTGTGCTGAGGGACTTGGTAAAACCTGGAGACGAGAACCTGCGTGAGATGAACAAAAAGCTGCAGAACATGCTGGAAGAGCAACTGACAAAGAACATGCACCTACAGAAGGATCTGGAAGTTTTGTCTCAGGAGATCGTGCGTTTGAGTAAAGACACCACCCCTGCGGAAAACTCCAAAGCCACGGGATAAAACTGGACGCCGTCCACCCGATGATTCAGTAcctttctctttgtctttttctcatCTCTTCACGGCTACCAGGAGGAAACTACATCCATCTCCTACAAAGACCTCCGGCAATCTCAGACGTACCAGGTGCACAGAGGGTCAAAACAGATCTGTGATTTACATACTACTGAATGTAACGTAACactttatatgtttgtttgtctgtgacGGGACAGTACTGTTAGAAAAAAGGTCCGTCGAGCAAACCCTGGCTGCTTGACATCCGTGAGTGCTCGGGACAGTGGCATGGCCTCGGTGATCCGACCCCACCACTAATTCCCCCCACCGTTCAGGAAAGCGCGTCTAATGTTGGCATCCTCAAAAATCGCTCTCACTGTTGTGTTGCCTGTTTTGTATATTCGATTCGCTAAAGACACTTACTGTacgtgtgaatgtgtgtgtatatggggCGTATTTATTCGTGCCAGAGAATCCAAATATCATCACGTCTACATCTCTACAGTATGCTGCTCGTATCTGAAAGAAACCGGCTGATATCTCAAGTTCTGCAGTTCgttatatcaaaaaaaaaaaaagcaggaagtTTTTCCGGGGCGTGAGCGGGAGAGCGTGCATTTAATTGCTGCGATAATTATCGGAGCAGTTTTGCGGGGCTCTCAAAATGTTCCCGTGAAGGAAAGCGGCTCCCTGGACTCCCCTCGTTAAGAAGCAATCTCTCCGCAGCTTAACGACTCAATTTGACACCTCTCTGTCTGCCTCAGAACTGACGGCGCTGTTGGGGAACGGACCAGTTTCTCAGCGCGCACTTGATTCCCATGAGAAGCTAACCGCTTGTTTTAGTGTGTAACACCACCAGTTTGTTTCGTTCACATCAACCCCCCGTCGTCTTTTTTGAACTCGATCCCGTTTTTATTCACTCAGTTTTTGCgaacattttaaattctgaCGCACAGAATTGTTTTATGTGGAGAGTGCGACGTTCATTTAATCGTTGGTCCTCAGGCTCCGTGTTTCGGATCCACGGTGTCTTGATTTTTTCCAATCGTTTACCAATGAACTACAGCTCTTAACGTCATATTTCATGTAACGCAAATGAAAGCTCTTAACTGAGTTGGCGAAATATCAGCCTCTTTTTCATTCACggcaaattaaatacatatgctCCATTTTACGTGCAATGAATATTGACCAATAATTTGTTTCGTTTGTTCCGATCATAGTAGATTAAACATTTCACGTGAGATTATGGATTCAGCGTCCACCTTATTCCTCGGTTCTGTGTTAATTTAgagatatatataaatgtatgttcatCTTGGCACAATGATGTTTTATGATTTGTGAGATGTGAACGATTAGCAGATCTTTGCAATGCTTTAAGCTTTATTACAACAACGGTTTGTTTCCATGTTCTTGGCTCATGAGCTTGACGTTTGTGCATGGTGCGTTAAATGCCTGTCAAAGCCCTGTCTCTGGCTTCTTAAGGAAATCCTGACGGAATGCTTTTCCATATTCCTTTCGTTTATACCATACAGTAGGAaaattctattctttttttccacaatgGAGGAAACTGACATATCGATTCACTTAGATGATTGCACTCAAACGAATGAAGGATGTTTGCCTTGAAGCTCAGAGTTGTTTCATTTCTTTGCCTTTTACTCTTTTAATCTAATATCTGCCAAACAAGCTCTTCTTTAAATAAGATCATCTTTTAATCATCACTAACTACATGTAAGCAGATTCTATTATTAACGTCCGATCTCCCACTACATCTCTACggctaatatttatttatgtgcatttcatCGTCATGTTCAGACTTCCATAACTTGCAGTGATAATAAAGAATGGctggaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90465 lncRNA upstream 24351 4672173 ~ 4673008 (+) True G61113
TU90460 lncRNA upstream 39697 4657340 ~ 4657662 (+) True G61108
TU90439 lncRNA upstream 183794 4510004 ~ 4513565 (+) True G61089
TU90437 lncRNA upstream 197952 4498877 ~ 4499407 (+) True G61087
TU90392 lncRNA upstream 252943 4439008 ~ 4444416 (+) True G61056
XR_006251664.1 lncRNA downstream 1693 4741901 ~ 4750324 (+) True LOC122350971
XR_006251665.1 lncRNA downstream 1693 4741901 ~ 4743664 (+) False LOC122350971
TU90521 lncRNA downstream 9695 4749903 ~ 4750141 (+) False LOC122350971
TU90534 lncRNA downstream 111462 4851670 ~ 4852112 (+) True G61159
TU90535 lncRNA downstream 112071 4852279 ~ 4853456 (+) True G61160
XM_043247748.1 mRNA upstream 804 4691775 ~ 4696555 (+) True mon1ba
XM_043247749.1 mRNA upstream 804 4691775 ~ 4696555 (+) False mon1ba
XM_043247659.1 mRNA upstream 214161 4474360 ~ 4483198 (+) False pnck
XM_043247658.1 mRNA upstream 214161 4474363 ~ 4483198 (+) True pnck
XM_043247082.1 mRNA upstream 266951 4410350 ~ 4430408 (+) True bcap31
XM_043246039.1 mRNA downstream 29032 4769240 ~ 4826233 (+) True kcnd1
XM_043246327.1 mRNA downstream 94280 4834488 ~ 4847188 (+) True LOC122350108
XM_043246328.1 mRNA downstream 94280 4834488 ~ 4847188 (+) False LOC122350108
XM_043246998.1 mRNA downstream 261337 5001545 ~ 5005441 (+) True pim1
XM_043247219.1 mRNA downstream 280356 5020564 ~ 5064931 (+) True tbc1d22b
XR_006251613.1 other upstream 623462 4048619 ~ 4073897 (+) False ccdc120a
XR_006251567.1 other upstream 765871 3924861 ~ 3931488 (+) False LOC122350109
TU89939 other upstream 846802 3848614 ~ 3850557 (+) True G60788
TU89218 other upstream 2657523 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 2661379 2033892 ~ 2035980 (+) True LOC122350053
TU90648 other downstream 364362 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 364362 5104570 ~ 5263963 (+) True LOC122350082
TU90650 other downstream 495571 5235779 ~ 5263963 (+) False LOC122350082
TU90653 other downstream 495571 5235779 ~ 5263963 (+) False LOC122350082
TU90655 other downstream 498273 5238481 ~ 5263963 (+) False LOC122350082

Expression Profile