RNA id: TU89217


Basic Information

Item Value
RNA id TU89217
length 1959
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC122350053
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2030824 ~ 2035980 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCATGTCGAAAACGAAGATCACCGTCGCAAAATCCGACATGAGCGACGAGATGCAGCGGGAGGCTCTTGAATGCGCTCTTCTGGCTGTGAACATGTACGACAGCAGCAAGGACATAGCCGTCTACATCAAGAAGGAATTCGACCGGCGGTATCAGCCCTCCTGGCAATGCATCGTGGGTAGCTGCGGCAGCCTCGTGTCGCACTCGCGGGGCTGCTACCTCCGCTTCACCGTCGGCAACGAGACCATCATGCTGTTCAAGACTAGCTGACGACTCCAACAGCCCCAGGGGAACGATCACGCCGAACACATCCGTACCATAGCCATCCGAATAAAAGCCTTGAGAACTTATCAGGTTGAAATCTCTTCCGTTTGCTGACCGGCCCcacttaatacatttaataaagtcTGCTGCATCGTGCAAACCATCGACCTGATCCAAAGCGGCTCGGATAAGAGCGAGCGTTCAATCTGATCGTCACGAATGTTTAGTTCTCGTCGCTGCATTGCGCTAAAATATCATAAGCCATATCATTAGAAGATATGGAGCGACGACTGATATTCTTGTCTGTATATGCGCGCATTGttgtcaaaaatgtaataatgcacGCGTACACAACAGTAAGCAGGAGCTCCCCGGTTTAATGAACTATACTTTTAAAACTAAACATGCTTCGGATGCCATATCTTATTGTCTGAATCGTTCCACGAAGAAGCCTTTAACGTCTGCTTCACAAAAGCCTCTTTGTGGCGAGAGTTTTTTAACTGCGTTAACGCAAAACACAAATTCCACGTTTTCCGCATACTTGCTTACGTCCCATCAGTTATTATAGCTATAATTGCATTCAATTAAACTTAACGTGCTCGTTTTGCATCAGAATCGAATTGCTATTAAGAATCGATAAAACAATGCTACACTTCAAAATCACGTGCATTGAATAGGAAAATCTGTGATTgttaattcatataaaaacgGTGCTCTCGATTATTTTTCTATCTtaaacaacacttttaaaacGAACTGGTTGAAGCTTTTTATTGATAAACCCTTCTTCTGTGCGGAACACAGGGCCTAGTACtgttttttaacttttcaaCTTGGTGGTCAGAATTggaaatattgttaaatgtttttcacagcCACCTTTCCCCACACCAGTATTATATCTGGAATAATCTACAGACCATCCCTCCGTCTTCATGCCCGGTTTGTCAACCCCGGGACCTTATATAGACCGCTGTGGTGTCCAATCAGCTGAATTCATCACAGGTGAACTCCAATTAAGCTGCTGAAACGTCTCAAGAACGATCCGCTGAAACCGAATGTAGTCGAGCTCAATCTAGAGCTTCACGTGCATGGGATTTTTCAGGTTTTCTATTTCGAACGAATTTGCAAAACGTTGTCTTTATGGGGTATCGTGTGTAGAATTGTCGGGAATAAGGCTGTAacacagtggttcccaaccggtgtgccgcggcactaaggggtgccgtgagatcttttgagggtgccgccaaaatttcaacaaaatttttttattaaggcagaatcagtgtaaacagtattctcatatcatctaggactaggtataaggtgttgttgcatgcaaactctcgaaatgaaacaaataaataaataataataaaaaagctagagattttaaatatctatttctttataagggtgccgggaacttttgaaaggctttccaagggtgtcTCAAACaggaaaaggttgggaaccactgctgtaacataaaaacatgtgGTAAACGCAtgcattttctgtcattttaccttttttattggACCGAACAGTTTGAGCGGTGATCGAGGTGTTACCCCGAGGTTTTTAAAACTGCAATACGTAgctatttttcaggattctttactGAAAAGTTCAAAACGAcagtgttttgaaaataaatgaatcgcATTTCCTtccacttttgatcaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251573.1 lncRNA upstream 6564 2024562 ~ 2027328 (+) True LOC122350140
TU89214 lncRNA upstream 6634 2024812 ~ 2027258 (+) False LOC122350140
TU89213 lncRNA upstream 13858 2018397 ~ 2020034 (+) False polb
TU89197 lncRNA upstream 30889 2000761 ~ 2003003 (+) True G60288
TU89187 lncRNA upstream 34424 1979786 ~ 1999468 (+) True G60281
TU89180 lncRNA downstream 5522 2041502 ~ 2113333 (+) True G60279
TU89181 lncRNA downstream 5522 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA downstream 5522 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA downstream 5522 2041502 ~ 2044650 (+) False G60279
TU89185 lncRNA downstream 5522 2041502 ~ 2042464 (+) False G60279
XM_043246854.1 mRNA upstream 13858 2014859 ~ 2020034 (+) True polb
XM_043246853.1 mRNA upstream 19208 2006084 ~ 2014684 (+) True enkd1
XM_043246852.1 mRNA upstream 19208 2008598 ~ 2014684 (+) False enkd1
XM_043247683.1 mRNA upstream 38033 1966583 ~ 1995859 (+) False ikbkb
XM_043247450.1 mRNA downstream 1719 2037699 ~ 2039825 (+) True LOC122350758
XM_043247567.1 mRNA downstream 19351 2055331 ~ 2058725 (+) False mrpl40
XM_043247566.1 mRNA downstream 19352 2055332 ~ 2058725 (+) True mrpl40
XM_043247582.1 mRNA downstream 25561 2061541 ~ 2069288 (+) True gle1
XM_043247302.1 mRNA downstream 33838 2069818 ~ 2071669 (+) True si:ch211-51h9.7
TU89216 other upstream 829 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 16372 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 115521 1915460 ~ 1918371 (+) True G60259
XR_006251599.1 other upstream 1181888 842077 ~ 852004 (+) True znf608
TU88420 other upstream 1229053 803653 ~ 804839 (+) True G59807
TU89218 other downstream 1772 2037752 ~ 2039836 (+) False LOC122350758
TU89939 other downstream 1812634 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1888881 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 2012639 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 3068590 5104570 ~ 5126254 (+) False LOC122350082

Expression Profile