LOC122350053


Basic Information

Item Value
gene id LOC122350053
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2030824 ~ 2035980 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89216
AGTTAGTTTTAGTCAAAGACACAGAAACTGTAAGAGAATCAACATATAATCGCTCCGTTCAGAGATAGACACATAAACACGATCAATGGCGAAAACATCACTGAACGTACGACAAGCGGACATGAGTGATGAGCTGCAGCGGGAGGTTCTCGAGTGCGCTCTTCTGGCCGTGAACATGCACGATGATAACTGGAGCATTGCTGTGTACATCAAGGAGGAATTCGACAGAAGGCACCAGCCCAACTGGCACTGCGTTGTTGGAGACAGTTACAGTTGCTATACGACATATAATTCGAACTACTTTATCTCTTTTGATGTGGGCAATAGACATATAACTCTTTACAAGTCTGACTGAGCAACAGTTCGAAGGCATTTGATCGAGGTGCTGGAGTGCAGTGCATTCAGatcaAGGCCTCGTCTCGTGTCGTCGCACGGAAAATGAGATGCTGATTTCGCATGACGAGTGTAAAACTGCAATAAATCGGGtcacaatgcaataaaaaaagctcTTAATAAATGCC
>TU89217
GACCATGTCGAAAACGAAGATCACCGTCGCAAAATCCGACATGAGCGACGAGATGCAGCGGGAGGCTCTTGAATGCGCTCTTCTGGCTGTGAACATGTACGACAGCAGCAAGGACATAGCCGTCTACATCAAGAAGGAATTCGACCGGCGGTATCAGCCCTCCTGGCAATGCATCGTGGGTAGCTGCGGCAGCCTCGTGTCGCACTCGCGGGGCTGCTACCTCCGCTTCACCGTCGGCAACGAGACCATCATGCTGTTCAAGACTAGCTGACGACTCCAACAGCCCCAGGGGAACGATCACGCCGAACACATCCGTACCATAGCCATCCGAATAAAAGCCTTGAGAACTTATCAGGTTGAAATCTCTTCCGTTTGCTGACCGGCCCcacttaatacatttaataaagtcTGCTGCATCGTGCAAACCATCGACCTGATCCAAAGCGGCTCGGATAAGAGCGAGCGTTCAATCTGATCGTCACGAATGTTTAGTTCTCGTCGCTGCATTGCGCTAAAATATCATAAGCCATATCATTAGAAGATATGGAGCGACGACTGATATTCTTGTCTGTATATGCGCGCATTGttgtcaaaaatgtaataatgcacGCGTACACAACAGTAAGCAGGAGCTCCCCGGTTTAATGAACTATACTTTTAAAACTAAACATGCTTCGGATGCCATATCTTATTGTCTGAATCGTTCCACGAAGAAGCCTTTAACGTCTGCTTCACAAAAGCCTCTTTGTGGCGAGAGTTTTTTAACTGCGTTAACGCAAAACACAAATTCCACGTTTTCCGCATACTTGCTTACGTCCCATCAGTTATTATAGCTATAATTGCATTCAATTAAACTTAACGTGCTCGTTTTGCATCAGAATCGAATTGCTATTAAGAATCGATAAAACAATGCTACACTTCAAAATCACGTGCATTGAATAGGAAAATCTGTGATTgttaattcatataaaaacgGTGCTCTCGATTATTTTTCTATCTtaaacaacacttttaaaacGAACTGGTTGAAGCTTTTTATTGATAAACCCTTCTTCTGTGCGGAACACAGGGCCTAGTACtgttttttaacttttcaaCTTGGTGGTCAGAATTggaaatattgttaaatgtttttcacagcCACCTTTCCCCACACCAGTATTATATCTGGAATAATCTACAGACCATCCCTCCGTCTTCATGCCCGGTTTGTCAACCCCGGGACCTTATATAGACCGCTGTGGTGTCCAATCAGCTGAATTCATCACAGGTGAACTCCAATTAAGCTGCTGAAACGTCTCAAGAACGATCCGCTGAAACCGAATGTAGTCGAGCTCAATCTAGAGCTTCACGTGCATGGGATTTTTCAGGTTTTCTATTTCGAACGAATTTGCAAAACGTTGTCTTTATGGGGTATCGTGTGTAGAATTGTCGGGAATAAGGCTGTAacacagtggttcccaaccggtgtgccgcggcactaaggggtgccgtgagatcttttgagggtgccgccaaaatttcaacaaaatttttttattaaggcagaatcagtgtaaacagtattctcatatcatctaggactaggtataaggtgttgttgcatgcaaactctcgaaatgaaacaaataaataaataataataaaaaagctagagattttaaatatctatttctttataagggtgccgggaacttttgaaaggctttccaagggtgtcTCAAACaggaaaaggttgggaaccactgctgtaacataaaaacatgtgGTAAACGCAtgcattttctgtcattttaccttttttattggACCGAACAGTTTGAGCGGTGATCGAGGTGTTACCCCGAGGTTTTTAAAACTGCAATACGTAgctatttttcaggattctttactGAAAAGTTCAAAACGAcagtgttttgaaaataaatgaatcgcATTTCCTtccacttttgatcaatt
>XM_043246237.1
GCAGAGGGGTGTAAGAGAGGTTAGATTGTGATGTAGATGAAAACAGGTAGAGTGAGTTAGTTTTAGTCAAAGACACAGAAACTGTAAGAGAATCAACATATAATCGCTCCGTTCAGAGATAGACACATAAACACGATCAATGGCGAAAACATCACTGAACGTACGACAAGCGGACATGAGTGATGAGCTGCAGCGGGAGGTTCTCGAGTGCGCTCTTCTGGCCGTGAACATGCACGATGATAACTGGAGCATTGCTGTGTACATCAAGGAGGAATTCGACAGAAGGCACCAGCCCAACTGGCACTGCGTTGTTGGAGACAGTTACAGTTGCTATACGACATATAATTCGAACTACTTTATCTCTTTTGATGTGGGCAATAGACATATAACTCTTTACAAGTCTGACTGAGCAACAGTTCGAAGGCATTTGATCGAGGTGCTGGAGTGCAGTGCATTCAGatcaAGGCCTCGTCTCGTGTCGTCGCACGGAAAATGAGATGCTGATTTCGCATGACGAGTGTAAAACTGCAATAAATCGGGtcacaatgcaataaaaaaagctcTTAATAAATGCCCCTCaagcttttatttcaatttctaTATGTTTAGACACAGCTGATGGTGCAGAAAGGCATTAAACTTTCAGGAATGTTGTTCAGGTTGGACTCTGATGTAAATAAGAACAGGAGGAGTGAGTTAGTTTTAGTCAAAGACACAGAAACTGAGAGCGAATCAACATATAATCGCTCTGTTCAGAGATCGGCACATAAACACGACCATGTCGAAAACGAAGATCACCGTCGCAAAATCCGACATGAGCGACGAGATGCAGCGGGAGGCTCTTGAATGCGCTCTTCTGGCTGTGAACATGTACGACAGCAGCAAGGACATAGCCGTCTACATCAAGAAGGAATTCGACCGGCGGTATCAGCCCTCCTGGCAATGCATCGTGGGTAGCTGCGGCAGCCTCGTGTCGCACTCGCGGGGCTGCTACCTCCGCTTCACCGTCGGCAACGAGACCATCATGCTGTTCAAGACTAGCTGACGACTCCAACAGCCCCAGGGGAACGATCACGCCGAACACATCCGTACCATAGCCATCCGAATAAAAGCCTTGAGAACTTA

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89216 False 521 TUCP 0.44 4 2030878 2033063
TU89217 True 1959 TUCP 0.42 2 2033892 2035980
XM_043246237.1 False 1125 mRNA 0.47 6 2030824 2034372

Neighbor

gene id symbol gene type direction distance location
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding upstream 16140 2006084 ~ 2014684 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding upstream 34965 1966583 ~ 1995859 (+)
LOC122350512 NA coding upstream 83875 1936761 ~ 1946949 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 203413 1822636 ~ 1827411 (+)
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding upstream 223422 1802695 ~ 1807402 (+)
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding downstream 19351 2055331 ~ 2058725 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding downstream 25561 2061541 ~ 2069288 (+)
si:ch211-51h9.7 NA coding downstream 33838 2069818 ~ 2071669 (+)
naif1 naif1,LOC107559603,LOC107753004 coding downstream 60179 2096159 ~ 2103906 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding downstream 70410 2106390 ~ 2133931 (+)
LOC122350140 NA non-coding upstream 3496 2024562 ~ 2027328 (+)
G60288 NA non-coding upstream 27821 2000761 ~ 2003003 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding upstream 31356 1967120 ~ 1999468 (+)
G60269 NA non-coding upstream 77698 1952793 ~ 1953126 (+)
G60265 NA non-coding upstream 80528 1947148 ~ 1950296 (+)
G60279 rpl6 non-coding downstream 5522 2041502 ~ 2113333 (+)
G60296 NA non-coding downstream 117491 2153471 ~ 2156394 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding downstream 123334 2159314 ~ 2162044 (+)
G60323 NA non-coding downstream 127327 2163307 ~ 2165242 (+)
G60328 NA non-coding downstream 156977 2192957 ~ 2204310 (+)
polb polb,LOC107670984,LOC107722860 other upstream 10790 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 112453 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 812020 1210815 ~ 1218804 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 1178820 842077 ~ 852004 (+)
G59807 NA other upstream 1225985 803653 ~ 804839 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 1719 2037699 ~ 2039836 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1812634 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1888881 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1993323 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 3068590 5104570 ~ 5264366 (+)

Expression


Co-expression Network