Gene
RNA
| Item | Value |
|---|---|
| gene id | G34277 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 16641342 ~ 16646222 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU38844 | True | 4109 | lncRNA | 0.45 | 2 | 16641342 | 16646222 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_16579927_16586961 | NA | coding | upstream | 54145 | 16579927 ~ 16587197 (+) |
| CI01000004_16567132_16570668 | NA | coding | upstream | 69974 | 16567132 ~ 16571368 (+) |
| CI01000004_16490931_16555397 | CARMIL3, LRRC16B | coding | upstream | 85349 | 16490931 ~ 16555993 (+) |
| CI01000004_16467711_16471121 | NA | coding | upstream | 169835 | 16467711 ~ 16471507 (+) |
| CI01000004_16407140_16438873 | NA | coding | upstream | 202092 | 16406985 ~ 16439250 (+) |
| CI01000004_16649360_16654303 | NA | coding | downstream | 2949 | 16649171 ~ 16654353 (+) |
| CI01000004_16695941_16729500 | NA | coding | downstream | 49411 | 16695633 ~ 16729719 (+) |
| CI01000004_16812706_16814956 | NA | coding | downstream | 166484 | 16812706 ~ 16815068 (+) |
| CI01000004_16869205_16944944 | CLSTN2 | coding | downstream | 222983 | 16869205 ~ 16944944 (+) |
| CI01000004_17062704_17110319 | CRHR2.S, CRHR2 | coding | downstream | 416482 | 17062704 ~ 17110319 (+) |
| G34330 | NA | non-coding | upstream | 169109 | 16472007 ~ 16472233 (+) |
| G34323 | NA | non-coding | upstream | 185716 | 16449680 ~ 16455626 (+) |
| G34322 | NA | non-coding | upstream | 192252 | 16448846 ~ 16449090 (+) |
| G34297 | NA | non-coding | upstream | 332036 | 16301233 ~ 16309306 (+) |
| G34266 | NA | non-coding | upstream | 460493 | 16180508 ~ 16180849 (+) |
| G34357 | NA | non-coding | downstream | 19358 | 16665580 ~ 16672434 (+) |
| G34359 | NA | non-coding | downstream | 26322 | 16672544 ~ 16672767 (+) |
| G34361 | NA | non-coding | downstream | 27699 | 16673921 ~ 16674301 (+) |
| G34362 | NA | non-coding | downstream | 28283 | 16674505 ~ 16674814 (+) |
| G34391 | NA | non-coding | downstream | 282252 | 16928474 ~ 16956174 (+) |
| G33815 | NA | other | upstream | 574878 | 16063415 ~ 16066464 (+) |
| G34220 | NA | other | upstream | 701392 | 15939357 ~ 15939950 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | upstream | 1549373 | 15091200 ~ 15097173 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | upstream | 2604442 | 14035393 ~ 14039142 (+) |
| CI01000004_12646972_12652534 | NA | other | upstream | 3985631 | 12646838 ~ 12652570 (+) |
| G34400 | NA | other | downstream | 331106 | 16971995 ~ 17025976 (+) |
