CI01000006_00612891_00618198 (RBM22.S, RBM22)


Basic Information

Item Value
gene id CI01000006_00612891_00618198
gene name RBM22.S, RBM22
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 611987 ~ 618372 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_00612891_00618198.mRNA
ATATTAATGCCGTTTAACATCAAAAGTATAAGCCTGACAGACCTTGTCATTATGCATTTATCATTTGTAGTGGAGAGTCGGTCTACACAATCTCGGTCACTCTTTATTTATAAGCTGCAGTGTTTTACATCACATGGCCTTCGGTGCTTTGACACTAATGGTCTAGGGGGCTGTAATGACATTAGAGTGGTTATTATGCCATTGCTCATCCTACATTCCTTTGTACATCCTAGGTCATGTCACATTTGTTGACTCCCTCCAAACTGCAGTCAAATCACAGTTTTGGTGACTTATATCCAAAATATCAAAAGTGGATCTTTGAATTGTAATAACATAACCACCACAGTCCATTTCAGATAAAAAGATAAAACAAACTGCCACAATACAACTTTCAGTTAGATTTGTTACTCGATGTTGAAAGTGATAGGTTACGTTAGGGTACAATAATAGTTCAGAAACAGACAATTGTACACTCAAAACATAAATTCAAGTGTTCATAAATTTTAATACTGACATAAGAAGAAAGAAAACATTCAAAAAGCAAAGCATATTAAAACAAATACCACCACAGAAATCAGTTTAAATGCTGAAAATGGGAAGAGCACATTTCAAATGTTTTGATTACTTTTGTTTGGCATAATTTAATATTGTATCTATATTATGTGCTATTTATTTCATAGAAAATTGAAGAAGGGCTGTGATCATAAAAATATATCTGCCTACAAGCGAGGGTTTGTTTCAGAAGATTACATTAAAATTAAATTCTTAGTGCAGAATTTTTCCATTTAGAAGGGGGCGAAATTTGTATATTCCTCCATAACAATAGGTGGCGCTGCCATTCTTTTCCAGCCGTATAGACGCAAAGCATTGTAGGTAAAGTTTTCGTTCGCGCTAGCCTGTAGCAATGGCGACGTCTTTAGGATCCAACACTTACAACAGGCAAAACTGGGAAGATTCGGATTTTCCCATCCTCTGTCAAACATGCTTGGGAGAAAACCCTTATATACGCATGACCAAAGAGAAATTTGGCAAGGAGTGCAAGATCTGTGCGCGTCCCTTCACGGTGTTCCGCTGGTGTCCTGGAGTCAGGATGCGCTTCAAGAAGACAGAAGTGTGTCAGACCTGCAGTAAAATGAAGAATGTCTGCCAGACCTGCCTCCTGGATCTGGAATATGGCTTGCCCATTCAGGTTCGTGACACTGGGCTGTCCGTTAAAGATGAAGTACCGAGATCAGACGTGAATAAGGAGTATTACACTCAGAATATGGAGAGAGAGATCGCTAACTCTGATGGCACAAGACCCGTGGGGCTGCTTGGGAAGGCACCGAGCAGTAGCGATATGCTGCTGAAACTGGCTCGTACCACGCCGTACTATAAGAGGAACAGACCTCACATCTGTTCCTTTTGGGTGAAAGGGGAGTGCAAGAGAGGGGAAGAGTGTCCGTACAGGCATGAAAAGCCCACCGATCCAGATGACCCGCTGGCTGATCAGAACATTAAGGACCGTTACTATGGCATTAATGATCCTGTGGCTGATAAACTCTTGAAGCGGGCCTCCACTATGCCCAGACTGGACGTACCTGAAGACAAGTCCATCACCACGCTGTATATCGGGGGGCTGGGAGAAAACGTTACAGACTCTGAGCTCAGGAATCACTTCTACCAGTTTGGGGAGATTCGTACCATCACCATCGTTCAAAGGCAGCAGTGTGCTTTCATCCAGTTCGCCACACGGCAGGCCGCAGAGACAGCTGCAGAGAAGTCCTTTAATAAACTCATTATTAATGGGCGCCGGCTTAATGTTAAGTGGGGCAGGTCACAGGCGGCTCGAGGGAAAGAGAAGGATGGGGTGACAGAGAGTGGAATCAGGCTGGAGCCAGTGCCAGGGCTCCCTGGTGCTCTGCCCCCACCCCCTGTGTCTGATGAAGATGCCTCCACCAACTACTTCAACCTGGCTCCAACCAGCTCCCCTGCTGTCATGAACCTGGGACTTCCTCCTCCACCTGGGGTTGCCATGCCCCCACCACCTGGTTTTGGTCCTCCTATGTTCCACACCATGGATCCCATGTCCTCTTCAATGCCCCCTCCAATGGCCATGAGGCCCCCCGGACAGGTCCACTACCCATCCCAGGATCCTCAGCGGATGGGCGCTCATGCGAGTCGTGGAGGCCCCTAGATAGTCATACTGTTCAGTGAGGACTGCTGAACAACTGAACCCAGAGTGCTCTCATTTTTGGTATCTGTTTATATGTCAATCATTTTCAGAGCAAGTGAGTAAGCGTGTAAGATGGAATGCAAATGCATAACAAACAAGGAAAACATCAGAAAAATTCCAGCATCTTAGAATTTA

Function

symbol description
rbm22 Predicted to enable U6 snRNA binding activity and pre-mRNA binding activity. Acts upstream of or within chordate embryonic development. Located in nucleus. Orthologous to human RBM22 (RNA binding motif protein 22).

GO:

id name namespace
GO:0048306 calcium-dependent protein binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_00612891_00618198.mRNA True 2350 mRNA 0.45 11 611987 618372

Neighbor

gene id symbol gene type direction distance location
CI01000006_00586425_00608567 NA coding upstream 2896 585968 ~ 609091 (+)
CI01000006_00537552_00548276 NA coding upstream 63396 537452 ~ 548591 (+)
CI01000006_00502041_00503898 NA coding upstream 107681 502041 ~ 504306 (+)
CI01000006_00423835_00428157 NA coding upstream 183618 423093 ~ 428369 (+)
CI01000006_00418370_00420217 SPAG16 coding upstream 191670 418370 ~ 420317 (+)
CI01000006_00647015_00654423 NA coding downstream 28643 647015 ~ 655017 (+)
CI01000006_00666971_00667988 NA coding downstream 48421 666793 ~ 668405 (+)
CI01000006_00674724_00686031 NA coding downstream 55483 673855 ~ 686506 (+)
CI01000006_00766356_00790875 CNOT6, CNOT6A coding downstream 147594 765966 ~ 791155 (+)
CI01000006_00800935_00809574 NA coding downstream 180947 799319 ~ 810282 (+)
G40852 NA non-coding upstream 60631 529128 ~ 551356 (+)
G40768 NA non-coding upstream 119675 488407 ~ 493026 (+)
G40767 NA non-coding upstream 127802 360009 ~ 484185 (+)
G40811 NA non-coding upstream 258024 353720 ~ 353963 (+)
G40800 NA non-coding upstream 306721 305007 ~ 305266 (+)
G40904 NA non-coding downstream 8361 626733 ~ 630432 (+)
G40935 NA non-coding downstream 96532 714904 ~ 715650 (+)
G40925 NA non-coding downstream 105449 723821 ~ 786328 (+)
G40919 NA non-coding downstream 286413 904785 ~ 906069 (+)
G40772 NA other upstream 132793 475465 ~ 479194 (+)
G41170 NA other downstream 1073693 1692065 ~ 1695821 (+)
G41424 NA other downstream 2027290 2645662 ~ 2660570 (+)
G41591 NA other downstream 2217795 2836167 ~ 2839421 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 3110858 3734554 ~ 3736035 (+)
G41996 NA other downstream 4498834 5117206 ~ 5124149 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019741 rbm22 coding NC_007132.7 CM002905.2 33211306 ~ 33229950 (-)