G40800


Basic Information

Item Value
gene id G40800
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 305007 ~ 305266 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU46302
CCCAGCTTGTGAGAAAGTTTTGATTACGAGCTCTATGAGTAGAGTAGTAACATAAAGGTAACATAAGCACACTTTTTTTTTTTTTTTTTTTTTTAAAGAAACATTTCATAAAAAGGTTTCGATTTTAAATTATAAAATAATACGCTATAAAAAATCATTTATCAAAGTTTTAAATAGAAGATTATTGGAGTGTGTTTTATAATATTTACTTTAAAATTTAATGTTTCAAGTTACTTGCTGTTTCTTTGTAAATATTTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46302 True 260 lncRNA 0.51 1 305007 305266

Neighbor

gene id symbol gene type direction distance location
CI01000006_00278488_00290221 SSH2B coding upstream 13303 278488 ~ 291704 (+)
CI01000006_00158417_00184263 OR115-7, OR115-2, OR115-9 coding upstream 120671 158357 ~ 184336 (+)
CI01000006_00143205_00144149 NA coding upstream 160465 142765 ~ 144542 (+)
CI01000006_00140414_00141739 NA coding upstream 162796 140023 ~ 142211 (+)
CI01000006_00110930_00139640 OR115-9 coding upstream 165113 110374 ~ 139894 (+)
CI01000006_00315992_00319208 NA coding downstream 9796 315062 ~ 319386 (+)
CI01000006_00363989_00372189 NA coding downstream 58723 363989 ~ 372264 (+)
CI01000006_00418370_00420217 SPAG16 coding downstream 113104 418370 ~ 420317 (+)
CI01000006_00423835_00428157 NA coding downstream 117827 423093 ~ 428369 (+)
CI01000006_00502041_00503898 NA coding downstream 196775 502041 ~ 504306 (+)
G40799 NA non-coding upstream 1780 303015 ~ 303227 (+)
G40797 NA non-coding upstream 5815 298960 ~ 299192 (+)
G40796 NA non-coding upstream 6281 298411 ~ 298726 (+)
G40775 NA non-coding upstream 71728 229191 ~ 233279 (+)
G40766 NA non-coding upstream 129560 175227 ~ 175447 (+)
G40811 NA non-coding downstream 48454 353720 ~ 353963 (+)
G40767 NA non-coding downstream 54743 360009 ~ 484185 (+)
G40768 NA non-coding downstream 183141 488407 ~ 493026 (+)
G40852 NA non-coding downstream 223862 529128 ~ 551356 (+)
G40904 NA non-coding downstream 321467 626733 ~ 630432 (+)
G40772 NA other downstream 170199 475465 ~ 479194 (+)
G41170 NA other downstream 1386799 1692065 ~ 1695821 (+)
G41424 NA other downstream 2340396 2645662 ~ 2660570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G100340 NA non-coding NC_056712.1 CM032081.1 16655480 ~ 16655904 (+)