CI01000006_00315992_00319208


Basic Information

Item Value
gene id CI01000006_00315992_00319208
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 315062 ~ 319386 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_00315992_00319208.mRNA
ACATAAAAAGCAAAAGAATGTTAGCATAGACAGCATGCCTTTATTTGTCCCTCTTCTGTAAGGAGTGCTTGCATTATTGACTCTTAAATTGCTACTAACCTCTCACTTTACACGCCTCTTCCTTTCCAGCTTTGACCAATAGAATTAAAACTCATGTGGCCTCTGTTTAACATTTCAAAATGTAAATATTATTCTAGAAAAAAAAAAAGCATCAAAATATCAAAACCAAAGACATTGTTTTGTTTTATGTAGAGGATAATTTGTGAGTTTTATGGTTTGAATAAAACCCTTTTTGTACAAAATGTTGCATGCATTGTCACTTATTCATAAAAATGGAAAGACACATACCACACGTTCACCATGGGTAATTACTCTTCCTGAGACTAGCTAATTTATTTCTAGTCACATAGCAGTTTCTCAGTTCAGTTTTTTACAGTTAGCTCATTTCTATTACATAACCCAGGAACAAAGGGTACTGGTTTGGGTGCAATATCCTCAAGGTCTCCTACCTATTTCAGACTGTTAATAGTCAATGCACTCCACCTCCACAGCACTTGAAGTGGATTCTGATGGCAGTAAAGGAAAGAATGGCTTGTAACTCAGACATTCAAGTAGTAAAACCACCATTAGTTCCATTAGATTGCGATTAGACTGCTTCCTATAGTTAAAAACAGTCTGTGGATCAAAGTATTGTTAATGATTTCTGAAGAAGGGGGGAGTAGAGATGTTTGCTATGGGTAGGGGAGGAGGTGCAAGTCCATTTAGGCTGCAGCACTAGTGAGAGTAGGACAGAACATTTGGTTTTAAGCTCTTTTGAGTTTTCCACTTGCTCACTTGAGGAAACTATTGCCCACCAACCTCAGTGTTAAGGTATGTTCATTGTGCCGTTGGATAGACCTATAGGTTACAGACTTAGGAGCAATCTCAGCAATGTGGGAATTCTTTCTCTGCCTGCTACCTTCTCTAATGCTGATCCTGGTAAAGATTTTGCTTCGGTGGAACTGGATCCGCCATCTTGCAGATAGTACTGTTCAGCAGTTTGGTCGCTGTATGTGGATTATGGCCTGTAGACTTCTGAAATTGCCGCATTTTCCAGTGTCTGAATTTATAGGAGAATGCCAGGCAGAAGTCAGACTGATCTGTAAACCCACGGCCCTTGCCAGCCACCTGAAGAAACATTGCTGTGCTTTGGCCCAGCCTCCGTTGGCAAGATGGCCTCAGGCCGACCCTCATCTTCAGATAATCACCAATCTCATGTGGCCCACAAAGGAAGGTGCTGAACTCCAGGGAGGAGTCCGCTTTAAAAGGGATAACCTTCTCCTAGTGGACGGGGGTATTGTGGCCCTGGACTGGGCTGTGAGTCTGACAGACCAACAAGTTCAGGCCAAAAGGGATCATCATCATCATGGAGGAAAAGTTCTGGGCCTTCACTCCAGCAATCCGGCTATTGTTATTATAATTCCCAACGCCCTGGGAAGAATGACGCCACACTTGATCAGATTGTGCCGCCAGGCTTTGCAACAGGGTTTCTATCCAGTGGTATTCCATCGACGTGGTCAGGGTGGTTGCCCGCTGATCACTCCACACTACCAGGAGTTCGGAAATCCCTCTGACCTTGTGCAAGCGGTAGCATACTTGCGGAGTCATCATCCATCCTCAACTTTGCTTGCAATAAGTGAGGGCTCGGGATCAGGGTTGCTGCTGTCATATCTGGGGGAATGTGGCTCTTCTTCATACCTGACAGCTGCTGCTTGCATCTCTCCTGTGTTTCATGGACAACTGTGGTTTGAGTATGAGCTTCCTTGGCTCTATCACTGGATAGCCCTCATTTATCGCAAGCTTCAAATAAACAGGTACGCCACTGCTTTGAGTTCTGTGATGGATGTAGCAAAAATTCTGCACTGCAACTCTTTGCGAGATATGGAAGAGCTCATGTTCTGTGCTACTAAGAAGTCAGATCACAGAATGTCAGACTCAATGGACCACGTTGGAAAGGACAGTTCAAGATTATCAACAAAGTCTGACTGGGCAAATTACTGGGAAAGGAATGAACCTTTGCGAGATGCAGACGAAGTGGCAGTGCCAGTGCTCTGTTTGTGTAGCCGAGATGATCCTCTACTTCCACCTCTCTCTACTGTACCCGAGGCACTTTTTCATAATAGCCCTTACTTTATGCTGGCCATAACAGAACAGGGAGGCCACTGTGGCTTTATTCATGAGGATGGACATGGAAGGACTACTTCCTGGAGTAATTTTTTGGTGTTGGAATACTTTAGGGTAGTTGCCGATTTCTTTGGGGTAGAAGAGAAGAAGGGGTTCAAGGATGATATTGCACATCGTGGCAGCCAGGGCCTGAGGCATAGCGCCAGTAGTGCTGTACTGTCCAGAAGAAGGAGGTCAACCTTGCTCCGGAAAGAAAGGCCCATCTTAGGTTCACGAAGACGGCAGATCTCAACTCCCTCTGACACATTCACATTAGAAGAAGAGCAGGTGGATTTTACTTGGAATAGATCCTACACTCGCTGAGTGAGAGAAGCAGGTGGTATCATAAGATCATAGATTGGCAGTGCTAAACTTAATACCAAGAGGCACAGAACATGTTAGGTGCCCTCAGTTAGGAAACCACAGTTGTGTGGAAATGAGGTTACAATAGATAAAGATTTAAAGGAAAGGATCAAAATGGAGATCAAGAACATGTTGATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_00315992_00319208.mRNA True 2704 mRNA 0.44 2 315062 319386

Neighbor

gene id symbol gene type direction distance location
CI01000006_00297085_00312816 CORO6 coding upstream 2007 297085 ~ 313055 (+)
CI01000006_00278488_00290221 SSH2B coding upstream 23358 278488 ~ 291704 (+)
CI01000006_00158417_00184263 OR115-7, OR115-2, OR115-9 coding upstream 130726 158357 ~ 184336 (+)
CI01000006_00143205_00144149 NA coding upstream 170520 142765 ~ 144542 (+)
CI01000006_00140414_00141739 NA coding upstream 172851 140023 ~ 142211 (+)
CI01000006_00363989_00372189 NA coding downstream 44603 363989 ~ 372264 (+)
CI01000006_00418370_00420217 SPAG16 coding downstream 98984 418370 ~ 420317 (+)
CI01000006_00423835_00428157 NA coding downstream 103707 423093 ~ 428369 (+)
CI01000006_00502041_00503898 NA coding downstream 182655 502041 ~ 504306 (+)
CI01000006_00537552_00548276 NA coding downstream 218066 537452 ~ 548591 (+)
G40800 NA non-coding upstream 9796 305007 ~ 305266 (+)
G40799 NA non-coding upstream 11835 303015 ~ 303227 (+)
G40797 NA non-coding upstream 15870 298960 ~ 299192 (+)
G40796 NA non-coding upstream 16336 298411 ~ 298726 (+)
G40775 NA non-coding upstream 81783 229191 ~ 233279 (+)
G40811 NA non-coding downstream 34334 353720 ~ 353963 (+)
G40767 NA non-coding downstream 40623 360009 ~ 484185 (+)
G40768 NA non-coding downstream 169021 488407 ~ 493026 (+)
G40852 NA non-coding downstream 209742 529128 ~ 551356 (+)
G40904 NA non-coding downstream 307347 626733 ~ 630432 (+)
G40772 NA other downstream 156079 475465 ~ 479194 (+)
G41170 NA other downstream 1372679 1692065 ~ 1695821 (+)
G41424 NA other downstream 2326276 2645662 ~ 2660570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019148 CU929119.1 non-coding NC_007132.7 CM002905.2 40523913 ~ 40527672 (+)