CI01000006_10044550_10045827


Basic Information

Item Value
gene id CI01000006_10044550_10045827
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10044050 ~ 10047230 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_10044550_10045827.mRNA
AAACTCATTAAAATTATATCTATTCATGCACTTCTAACTTTAATATTAAATTAAATTATTCAAATTATGGCTCTTATACGTGTTTTAGATCAAGATCGAGATCATTTAAAAAGGGTTTTATACGACAAAACACACTCACTTACTTTGAGAATTGGAATATCAGATAGTTGATGACTTGGTAATTAAATTTGTGAATATTTTGAATAAACAAGGAAAAACTAAATAAAAGCGACTGTATAGTGTTATTGTGGCTGCAGTGTGTCACTTGACAAGCACGGCGCCTCGCCATGGAAACAATAAAGGGAAACGTCAGCCAGAATATTTTAAACTCTTGTGTGAAAGGGTTAACCCAACAGCGGGGTTAAAACAACCCAACTTGGGTTGTTTTTAACACAGCATTTTTTAGTGAATTGTAAAAACTGCACATAATGTAATAAGTATTACATTATTATTGTGATAAAATGTTCATAATGTAATAATTTTCTCAAAATGTAATAAAATCTTGAGCTCATAATGTAATAACAATTTTTACATTGAGAAACTTATTACATTGTAAACTTAGTAGTAGTATAAGTAATACGGTGGATTGTGTTGGCAGGTTAAGACTGGATTTAGATTTTTAAAATGTACTGTAAAGGAATACCAATGCTTTATGTTTAATAAAAAATATAATAATAATAATAATAATAATAATAATTCCATGAATATTGAAATCTGTTGCATTTCGTATGTAGTTTAAGATTTTTAAAAATGTACTGAAAGGGAATACTAATATTTTTTGTTTTAAAAGCTATTATAATTATGACAATGGTTTTGGTGAGTTTATAATGTAATACATTTCTAATAATGTAAAAATTGTTATTACATTATGTGCTCAAGATTTTATTACGTTTTGAGAAAATTATTACATTATGAACATTTTATTACAATAATAATGTAATAAAATTACATTATGTGCAGTTATTACTGCTACATGGTTATTATATAAATAATCTGCACTAAAAATCCCAAAAGGTGTGACTGAGCGACTTTTTTTCACTGCAGCTGCAAGCTTTTCTTTACATTCAAGGTGTGGCAATATCATTTCAAACAATACTGTCTTTACAAGTAACTCATTAAAACACTGAAACTTGTGGTTTACTGTGAAACTATTTTTTTGTTGGCAGCACAAATAGACAAAGAAACTGTCAAAAGGGATGAGTTCAGGTTGATGGGACACTTTTTCCAAGTCATCTCAATGGCAAAAAGTGTCCCAATCACCCCGAATTCACCCTACATGTCTGTAAAATGTAACTTATTTAACTTTCTTCATTAATCTGTTCATAAAAGCAACATCAAAAGCTCATTTTTGTTTAAATTACAGTGTGTATAATTTGTAATGTGCCTTCATTTCTCTCTACAGAATGAAAAGATTGTGGCTTCACCTCAAACTGAAAAATGTCTGTTTCGTCAGTTTTACACTAGCAATCATTATATGCTGTTTTATGACCATAACTTTAAGAGTAAATGAAAAAGGAAAAGGAGGACAGGAAGCAGGATTGTCGGAAAGGCTGCGGCTGACAGTAAAATATGGCATTAACTGCACAGCAATATATGAAATGGAACCTGTGGAAGTGGGCAAAACTTTAGTCATCCGCAAGCAAAAAACCTATGTAGGGGCAACTGACGAGACTATTGTAAATGCCACCTCTGATTGTGATTGGTTTGTTGTGACACAGGGCTATGCTGGGATTCAAGGCACTGAATTTGAGCGTGAATTTCCTCTTGCTTTCTCTTTGGTTGTTCACCAGGATGCGGCTCTTGTAGAGAGGTTGCTCAGGGCCATTTATATGCCCCATAACATATATTGCATACATTATGATCTGAAGTCTTCAGCTGACTTTATTTCAGCAATGAAAGGTCTGGCCCGCTGCATCCCCAACGTCTTCATTGCCTCAAAACTGGAGAGGGTTCAATATGCAGGCATCTCACGACTCAGAGCGGATCTCAACTGCCTGTCTGACCTCCTAGATTCTGAGGTTAAGTGGAAGTATGTCATCAACCTGTGTGGTCAGGACTTTCCACTGCGGACAAACGCCGAGCTGGTGTCGGATCTAAAGGAGCTGAAAGGCAGGAACATGGTGGAGAGCAAGCGGCCTGGAGGAAAGAAATGGCGCTGGAGTGTTCATCATATCTTGAAAAATAACAATGAGTACTATGACACACCTGTCAGCACTTCTGAGGAGAAATCTCCACCTCCTTACAACATTGAAATGTTTTCGGGCAGTGCGTACTTTGCTCTCTCAAGGGAATTTGTGGTTTTTGTTCACTGGAGTTTCCTAGCTAGAGATTTCTTGGCTTGGTCTGAGGATACATACTCACCTGATGAACATTTCTGGGCGACTCTGGTTCGTGTTCCTGGAGTACCAGGTGAGGTGCACAGATCTGATCCTGAGATCTCAGAGCTGATTAGTAAAACTCGTCTAGTGAAGTGGTGGCCCCTTGAAGAGAAACTTTACCCACCGTGCACAGGAGTCCGTGTGCGAGAAGTGTGTATTTATGGTGCTGCTGAGCTCAGATGGCTCCTAAACTACGGCCACTGGTTTGCTAATAAAGTAGATCCAAAAGTGGATCCTGTTCTTATAGAATGTTTAGAAGAAAAGCTTGCAGAAAAACATCTGAATGTGCAGAGTAAAGTATAAATAATGGATTCTCATCCTGGAGTTCAATGTAATACTGACTGCCTGGTTGTATAAGTTATTCTCTGTTGTTTCCCCTGCTGTGTACAAAGTTGGCTTTTTGAACCACTGTTAAGTCCAGTGGGGGTGTTCTGGTGCAAATTTACAAAACCAACATGGTGCATGGAGAGAAAAAAAAAAAAAAATTCATAACCCAACCAGCAGCACTTGTGGAGGAAAATGAAAATGATGGGGAAACCTTTTGTCACCTAAAATATATATTACTGAACAATTAAAAGAGGTGATATAACAAATCTAGTACCGAAATATTTTAAAGAATGTAATCATATGGTCTTTTTTGATTATTGGCACTGAACACACAATTCCCAGTAAAAAGAGGTGACCAAATTCTAAAAGGAAGATAAGCATTTTAGATTTTTTTATTTTTTTATTTTTTTTATTTCCTGCCAGGATACATGAAGAGTTGGGTCTAAAAGATTTTTTTTTATGACATTTTAAATAAA

Function

NR:

description
Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4, partial

GO:

id name namespace
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_10044550_10045827.mRNA True 3181 mRNA 0.36 1 10044050 10047230

Neighbor

gene id symbol gene type direction distance location
CI01000006_10016544_10031947 FAM169AB coding downstream 12103 10016375 ~ 10031947 (-)
CI01000006_09870216_09870854 NA coding downstream 173196 9869797 ~ 9870854 (-)
CI01000006_09857830_09868080 NA coding downstream 175813 9857816 ~ 9868237 (-)
CI01000006_09383325_09387907 AQP3B, AQP3 coding downstream 656143 9383270 ~ 9387907 (-)
CI01000006_09338560_09342684 VPS29 coding downstream 700267 9338265 ~ 9343783 (-)
CI01000006_10053771_10055045 NA coding upstream 6293 10053523 ~ 10055823 (-)
CI01000006_10078319_10079570 NA coding upstream 30533 10077763 ~ 10079570 (-)
CI01000006_10086956_10090090 NA coding upstream 39325 10086555 ~ 10090090 (-)
CI01000006_10096004_10116009 PTPRA coding upstream 48654 10095884 ~ 10116009 (-)
CI01000006_10137964_10143809 IDH3B.S, IDH3B coding upstream 90734 10137964 ~ 10143809 (-)
G46986 NA non-coding downstream 26201 10017583 ~ 10017849 (-)
G46979 NA non-coding downstream 48308 9995539 ~ 9995742 (-)
G46973 NA non-coding downstream 54614 9989204 ~ 9989436 (-)
G46972 NA non-coding downstream 55439 9988401 ~ 9988611 (-)
G47024 NA non-coding upstream 147202 10194432 ~ 10194641 (-)
G47035 NA non-coding upstream 184949 10232179 ~ 10232399 (-)
G47053 NA non-coding upstream 216851 10264081 ~ 10264320 (-)
G47410 NA non-coding upstream 261650 10308880 ~ 10309101 (-)
CI01000006_10349084_10362629 NA non-coding upstream 312070 10348973 ~ 10363587 (-)
CI01000006_07500281_07507754 NA other downstream 2533094 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 3067178 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 5481982 4559509 ~ 4562068 (-)
G43549 NA other downstream 5688622 4352510 ~ 4355428 (-)
G43102 NA other downstream 7110066 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 435626 10453613 ~ 10484006 (-)
G47658 NA other upstream 983681 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 1603133 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 2287179 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 2303529 12569205 ~ 12582487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018788 gcnt4b coding NC_007132.7 CM002905.2 15865523 ~ 15869484 (+)