G139011


Basic Information

Item Value
gene id G139011
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4706213 ~ 4707525 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188186
ttttagacCAGTATTGTTTAACCCTGCTCCAGCAGGAAACAAACCTGTTTATTGTGaaccattattttttctttaataatctaattttactttttttttaggttctCTTATCAATtaaatcttattattttataatagttACGCCTACGCAAATGATAGTCTAACATTACaatgtaggggtgggcaatatgataAATAAGATATTATACACGATATTTAAAGACGATATTTATCACCATTGTAGAAGTTAAAAAGTCAAAAACTGCTATGGAAATACTGTCgtatttttgtaaaatgtttaattattggTTTTGATTCAAAATTTGCAACGattcatccaaataaacaggacAAATGATACTttcttcaataaaaaaaaatgtgttgggGATTTGGTCATGGTTCTTTACGCACCAACGATATCCACAATATACTCAGAAAATAATACTGTGATTAGATtaaatattgcacacccctacttTCTATATGtttctatttctttctataTGTTTCTATATGTTTCAGTGGTTTAACTTCTGGACCCGGCCgtgaataaaacattaaaacattacaccTAGCCCCCTCAGGAACTCTTTGGGCACCCTTGTTCTCAAACATTGCACTACAATAGACACATGATCTTCGTCTTCATCACATTCTTCCATTTAAATCAAGCCCAATGGAAGGAAGTGGTCTACAGAGATTACTGCGAGGACTTCCCCCTGCTCAGAAAAGTTCCGACCCCCTCAGGGACCCCACAGATTGGTTAAGGTGACTCAAATTAGAAAGGAAGTGCAGTTTCCTTTGAGAGCACATTCCTCTGACACTTGagtagtgtagtagtacagCAATGCAACAGAAACAGGAAGCTGAAGCCATTCCACTGTAGAAACTGCCACTGTCTTGAGGTTCGGCATTGTCTAGAACGATCCAGACTTTGACCTTGACCTCTTTGGTTTTGAGCCTTTTGACCTTGAGTTCTTTGGTCATGAGCAACTTGGCCATGAGCTCTTTGAGCCACCAAGCCACCAGATCTCCTCAGAGAAGAGTAAAGATGTCCTCCATGTTTCTTTTCCCCTTCAAGTCACGTCAGTCATATGCTGATGATATTCGAGACTGATTCCAGAAGGGTTCTGTAGATGTCCGACCGCAGGAACCTTGGGTACGAGTCTTTCTCCATCAAGCCGAACACAATCTTCTGCGCATCATCGAAGCACAACCTGGTAGGAGCCTGAACATTCTGCCTGATGACTTCCCGGGTATGATGGTCGATGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188186 True 1278 lncRNA 0.39 2 4706213 4707525

Neighbor

gene id symbol gene type direction distance location
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding downstream 160725 4530536 ~ 4545488 (-)
LOC103036885 LOC103036885,LOC108428857 coding downstream 220228 4484233 ~ 4485985 (-)
LOC103026217 nos1apb,LOC108428842 coding downstream 230296 4459769 ~ 4475917 (-)
LOC103025914 NA coding downstream 252844 4435813 ~ 4453369 (-)
xpr1 xpr1,LOC108267842,LOC107593799,LOC107681714,LOC107722139,LOC105029208 coding downstream 273443 4397508 ~ 4432770 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding upstream 15861 4723386 ~ 4727528 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding upstream 31463 4738988 ~ 4748753 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding upstream 54228 4761753 ~ 4767293 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 64268 4771793 ~ 4805667 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding upstream 323894 5031419 ~ 5045009 (-)
G138919 NA non-coding downstream 284618 4420864 ~ 4421595 (-)
G138913 NA non-coding downstream 309281 4396090 ~ 4396932 (-)
G138910 NA non-coding downstream 355087 4332394 ~ 4351126 (-)
G138837 NA non-coding downstream 472031 4179824 ~ 4234182 (-)
G138822 NA non-coding downstream 530617 4172979 ~ 4175596 (-)
LOC111194275 NA non-coding upstream 45048 4752573 ~ 4754327 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding upstream 113678 4821203 ~ 4838073 (-)
G139029 NA non-coding upstream 128257 4835782 ~ 4836531 (-)
G139003 NA non-coding upstream 131341 4838866 ~ 4854692 (-)
G139043 NA non-coding upstream 297967 5005492 ~ 5006291 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 368016 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 844857 3847722 ~ 3861356 (-)
G138708 NA other downstream 872543 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1530860 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1591527 3095601 ~ 3114686 (-)
G139074 NA other upstream 568581 5276106 ~ 5276468 (-)
G139105 NA other upstream 622553 5330078 ~ 5330805 (-)
G139489 NA other upstream 1301528 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1315084 6022609 ~ 6054733 (-)
G139487 NA other upstream 1597444 6304969 ~ 6374709 (-)

Expression


Co-expression Network