G139778 (copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662)


Basic Information

Item Value
gene id G139778
gene name copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8038895 ~ 8042442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189214
GGTTTAACATTGTAAGACAAACatgaatgtaaatatacactttaatgaatggatgaaggaaaaaaaaaaagaagaagaaacaacCAGCTGGAGGTCCTGCATGAAATACAAAATTTTAAACTGACAAGATAATTCTCCACATCTTTTCATTCACGGTCCTGAGGGGAGCCATATATTCACCTCAGTCCCCATCAGACGTACATCCCTGTTCCTGCTTGAGGAGCTGCATGACAAACGACATGAACAAGTACAAAAGGGCTTGGTCTCTTAAATAAAACTCAATGCTTCCGTATCGGGGGTTTAATCGTCTAAGAAGTCGTCGTCCAGGTTGACGTCTGTGGTGTCGATGTCATCCAGCTCCATGTTGTCCAAGTCGTCTTCCAGTTCCTCCAGAGTCTTGTCTTTCAGTTCATCCCCTACTTCGATGTCCACTTCTGGCTCTTTAACAGGTTCAGGCTCTGGAGGAGCAAAACTAGCTACTGCAGAGGCTACAGGAGCTGAAACTGCGGCCATGACTGAGGCCAGGACACCTGCTTCTGCTGGAGCTTCCTCAGAGTCGTCTACCTGCTGTGGTGGAGTAGGTAAAACTCCTTTGGGCTCATAACCACTGGCTTCCTCCAACACGTTCCGCTCCTCattaggCGTGACCAGTGGGTAGTCAGTAGCCGGTCTAGTCTTGCCCAGGCAGGTCTCACGGAGAAAGTGCTCGGCCACAAAAGCCTCCTTCAGGCCAGGGAACAGGTTCTCGTACTCCGTGGGGTCGGCCAGAGACTCGGCTGCCTTTTGGTTTACTTTAGACAGGCTCTCTCTCCACAGCTTCACCACTCTGGACACTTGGCTGGGTAGATACGTGCGAGCCAAAAAGGCAGCCTCAGGCAACCGATTGGTCCTGATCAGGAGTTCCAGACACTGGTCCAATCCTGCAGGAAGTAGGTCATAAAGGCCACGTTGTTCTTGCCATCGCGCTCGGCACCTTCGGCCAGTTTGCTCACCATAGCAGCGTTACCGGAGGCGGTGGCCAGCAGCAGCAAGCCACCATAGTCCTGGGCATGATGGAGGCACTCCTGGGCCAGCCCAAACTGGCACTTGCTGATGGCCAGCTCAGCCAACTGCTTCCACTTCTGCTCAGACT

Function

symbol description
copb2 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axial mesoderm; cardiovascular system; digestive system; fin; and nervous system. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 19. Orthologous to human COPB2 (COPI coat complex subunit beta 2).

NR:

description
PREDICTED: coatomer subunit beta'-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189214 True 1132 lncRNA 0.51 6 8038895 8042442

Neighbor

gene id symbol gene type direction distance location
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 24270 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 127124 7741723 ~ 7911771 (+)
LOC103026570 NA coding upstream 309581 7721740 ~ 7729314 (+)
LOC103026260 NA coding upstream 321646 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 332353 7698361 ~ 7706542 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 89844 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 529391 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 980655 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 1076726 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 1398250 9440692 ~ 9447133 (+)
G139782 NA non-coding upstream 2922 8022383 ~ 8035973 (+)
G139781 NA non-coding upstream 17962 8020446 ~ 8020933 (+)
G139720 NA non-coding upstream 56598 7628240 ~ 7982297 (+)
G139750 NA non-coding upstream 470325 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 498952 7539659 ~ 7539943 (+)
G139787 LOC108442840 non-coding downstream 19288 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 54856 8097298 ~ 8097743 (+)
G139798 NA non-coding downstream 79597 8122039 ~ 8123343 (+)
LOC111194297 NA non-coding downstream 470513 8512955 ~ 8514756 (+)
G139902 NA non-coding downstream 501865 8544307 ~ 8544731 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 992597 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 1296826 6718238 ~ 6742069 (+)
G139282 NA other upstream 1771508 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1796324 6235434 ~ 6242571 (+)
G139268 NA other upstream 1874731 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1118891 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1177832 9220274 ~ 9223981 (+)
G140062 NA other downstream 1497333 9539775 ~ 9540810 (+)
G140103 NA other downstream 1701256 9743698 ~ 9745355 (+)
G140258 NA other downstream 1947476 9989918 ~ 9990296 (+)

Expression


Co-expression Network