G139720


Basic Information

Item Value
gene id G139720
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7628240 ~ 7982297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189143
acaccagcagatgacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtcatctgctgatgttggtccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgcttccctctgctactgacaacttttatggagatgcagatttcattttctagcaggacttggcgcactgccaaaagtactaattggttttatataatattatatttttctgagacactaagGCTTTAATAACGGCGATATATAGAGCAAGTAGCAATAGTGCCAGATTTTAACCAGGTCACCAACATAATAGTGATTAAATTATAGATAGACAAAACTTGTTTAGAACTAAAATAAGccaaatccaaaaaaaacaaccaaaagaTGAAACAAAAAGACAATCAGTGATCCAACACAGATACAATCAAACAGGAGAACTTCTCAGCATGCAGTGTACAAGATTGGTAATACTTTGCCAACTGGTAGTTCCAACAGGACAagacaggacaagacaagacatgtaGATGACAGTTATTGGTTATCAATTAAATGGTGCGTTTCCACTGCATTCTCTCTACTAATACTGTTagactgtttctttttttggttttctattagtgaaaaaaaaaatggtatctgaaatatttttttaaatagctgcTTAATGGTGGTTCCAAGTGTGCTGAGGGTGGACTAAAATCTAATGTGTAAACCTTGCGTAGAGTTGATTGGCCAGAGAAAAGTGTACAAAGGtagatcagagactgtaaaaaaagatggacgctgtgtcgcagttcccattcattcaatgaaaatgaagctaaaatcttccaccatgttggcgatcctgaaacccgagtcagtagagcgcagtagagaccagaggagagagaaagactgtggagagacagcctactcatttaaataaccccgcccctgagggctgcctcgaggtcacaggctgcggagcggagctgacggtctgttattggtcccgcccataatcAGCCCTTTTACAACAACCACACCTGTTTTGAATAGaactgaataacgttttaaaaaatgaattctctggggatataaaaatttgacaatataagcagaggttacactagctgctgcat
>TU189147
TCAGTAAATCAAAAAAATTGAAAGGACTTTGAAAGTatgctcaagtgcagtcgcaaagaccatcgcACAacacgttatgatgaaactggctctcatcaggacagctgcaagaaaaggaagagcaagagttaccagctttagaaaccgcaagttaccagcaccccagataagagcatctaaatgcttcagtattttggtttatttagcacttttaagttgctacatgattccttatgtgttccttcataatctggatgacttcattattgtaatttacagtgtagaaacatgtagaataaatgaaaacattgaatgagaagatgaaGGTGAaaatactactactactactactactactactctatctactgtaactgtagattgtCCCATTTGTTAACAGAAATAATGGGAGGAGGCATCATGTAGACCAGCAGAcagggtgggacaattggcctagctaaattggggagaaaaaaaatgaaaaaaaaaaatagaaataaaggtaaataaagAGAATCTGAGGGAAATCTTATTCTGCTGTGTTAACTTTGATCCTGAATTTCccatgaaattatttttttagactaTATTTGAGATGATTTAACTCACcaaaatatattgtatgatttttttttttttttgcagtatgtGGGATGCTGAGAGTTGGGAAATTATGTGTATTAATTGTGGAATATTGTGAAATCAAGTATTTTTGTTTGAATTGCAGAACACAGAATTGGATATTATTGctacagtatattattattagtatcagtaAGTTATTGATACAGAGATGGACCTTTATTAatacatatgaaaaaaaaaaatgatataaatgctatatacagtaaattaatacattccgatccatttttttctacattagcAATACATTTTCATCACAGTGATGgtattatttttgtcattttcactATAGGGATGAGGGTGAAAATAGGGTATTTGgggtatttgtatttgtatacacacacacctccatttCTACATTTCTCCAGCTGCCATTGGCTCCACCACCTTtcctgaccccgcccccaacTGGACTCTTGTAATATCGAATCTCACGATGGTGTACGACAAAAGTGTATTTATTCCATTGTATTTTTCCCCCTTTCTTTTTTGTAAATTGGAATAAAGACGCTATGTTTGGAGttgg

Function

NR:

description
PREDICTED: probable vesicular acetylcholine transporter-B

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU189143 True 1265 lncRNA 0.39 2 7654837 7982297
TU189147 False 1171 lncRNA 0.34 3 7628240 7660131

Neighbor

gene id symbol gene type direction distance location
LOC103025648 NA coding upstream 378107 7230536 ~ 7250133 (+)
psmb5 psmb5,LOC108438927,LOC107668975,LOC107558100,LOC107706341,LOC107694665 coding upstream 443837 7164784 ~ 7184403 (+)
LOC103025339 psmb11,LOC102219341 coding upstream 465978 7160020 ~ 7162262 (+)
LOC103043453 NA coding upstream 609710 7005464 ~ 7018530 (+)
LOC103024705 NA coding upstream 623991 6995553 ~ 7004249 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 149989 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 589536 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 1040800 9023097 ~ 9025014 (+)
LOC111194194 NA coding downstream 1136871 9119168 ~ 9125820 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 1458395 9440692 ~ 9447133 (+)
G139750 NA non-coding upstream 59670 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 88297 7539659 ~ 7539943 (+)
G139738 NA non-coding upstream 120883 7507052 ~ 7507357 (+)
G139737 NA non-coding upstream 151894 7475970 ~ 7476346 (+)
G139712 NA non-coding upstream 424984 7202932 ~ 7203256 (+)
G139781 NA non-coding downstream 38149 8020446 ~ 8020933 (+)
G139782 NA non-coding downstream 40086 8022383 ~ 8035973 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding downstream 56598 8038895 ~ 8042442 (+)
G139787 LOC108442840 non-coding downstream 79433 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 115001 8097298 ~ 8097743 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 581942 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 886171 6718238 ~ 6742069 (+)
G139282 NA other upstream 1360853 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1385669 6235434 ~ 6242571 (+)
G139268 NA other upstream 1464076 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1179036 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1237977 9220274 ~ 9223981 (+)
G140062 NA other downstream 1557478 9539775 ~ 9540810 (+)
G140103 NA other downstream 1761401 9743698 ~ 9745355 (+)
G140258 NA other downstream 2007621 9989918 ~ 9990296 (+)

Expression


Co-expression Network